Microsatellites /Tandem Repeats database

Genome: Porphyromonas asaccharolytica DSM 20707

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
463944TCTAATCTCTAACTTCTAATCCCTAACTTCTAACCTCTAACTTCTAACCTCTAACTDesign primers
504583CGATTCCTCCGAAGTTTCATT-TGATTCCTCCGAAGTTTCATT-TGATTCCTCCGAAGTTTTATTDesign primers
961468GAAATAAAACTTCGGAGGAATCAAATGAAACTTCGGAGGAATCAAATGAAACTTCGGAGGAATDesign primers
984261CCGTAA-CCGTAA-CCGTAG-CCGTAA-CCGTAG-CCGTAADesign primers
1064530TG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AGDesign primers
1065999GATAAGGCATCTGATAAGACATCTGATAAGACATCTDesign primers
1129791TGTCTAACCTCTAATCTCTAACCTCTAATCTCTAACCTCTAADesign primers
1172301TTAGAGG-TTAGAGG-TTAGAGG-TTAGAGGDesign primers
1172360TCTAATCTCTAACTTCTAATCTCTAATTTCTAATCTCTAAATDesign primers
1204823CTCTAACCTCTAACCTCTAATCTCTAACCTCTAACCTCTAATDesign primers
1272558TGGTCATGGTCGTGGTCATGGTCATGGTCGTGGTCGDesign primers
1480692TCCACGTGGAGATTTGAGAATTTCCACGTGGGAATTTGAGAATTTCCACGTGGGAATTTGAGAATTDesign primers
1514966AAAGGGAA-AAAGGGAA-AAAGGGAADesign primers
1706171TATCCACGTAGATATTTTTCATTCTCCACGTGGATATTTTTCATTCTCCACGTGGATATTTTTCATDesign primers
1821615GGAGGAAATTTCTTTTTCCAACGGAGGAAATTCTTTTTTCCAACGGAGGAAATTCTTTTTTCCAACDesign primers
1832327GTTCCAACGGAGGAACTTTTCGGTTCCAACGGAGGAACTTTTTAGTTCCAAGGCAGGAACTTTTCGDesign primers
1957515TACCCAAGAAAAGCCTAAGAAAGACCCAAGAAAAGCCCAAGAAAGACCCAAGAAAAGCCCAAGAAADesign primers
1968220ACTGGAGTTTCCTGCCTATGAAACTAGAGTTTCCTACCTATGAAACTAGAGTTTCCTACCTATGAADesign primers
2052691ATCCCTCCCTTGGGATCTTTTCGTTCCTCCCTTGGGATCTTTTCATCCCGCCCTTGGGATTTTTTCDesign primers
2066137TTAGAAGTCAGAGATTAGAAGTTAGAGATTAGAAGTTAGAGADesign primers
2098207ACTTCTAATCTCCG-ACTTCTAATCTCCG-ACCTCTAATCTCCGDesign primers
2182570ATCTCTA-ATCTCTA-ATCTCTA-ATCTCTADesign primers

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