Microsatellites /Tandem Repeats database

Genome: Treponema brennaborense DSM 12168

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
228562GCAAATAGC-GCAAATAGC-GCAAATAGCDesign primers
433608GGACGGAACTGATATCGGTAT-GGACGGAACTGATATCGGTAT-GGACGGAACTGATATCGGTATDesign primers
445559ATTGAACGGACACTGCAACG-ATTGAACGGACACTGCAACG-ATTGAACGGACACTGCAACG-ATTGAACGGACACTGCAACG-ATTGAACGGACACTGCAACG-ATTGAACGGACACTGCAACGDesign primers
484700GCGTTCAGCAGACAACTGC-GCGTTCAGCAGACAACTGC-GCGTTCAGCAGACAACTGCDesign primers
507232GTGTGTCAGACGAGGAATCT-GTGTGTCAGACGAGGAATCT-GTGTGTCAGACGAGGAATCTDesign primers
531948CGCCGGTTTGCGCTGATA-CGCCGGTTTGCGCTGATA-CGCCGGTTTGCGCTGATA-CGCCGGTTTGCGCTGATA-CGCCGGTTTGCGCTGATA-CGCCGGTTTGCGCTGATA-CGCCGGTTTGCGCTGATA-CGCCGGTTTGCGCTGATADesign primers
925602TGTTTTGACGCTCAAACCTTAT-TGTTTTGACGCTCAAACCTTAT-TGTTTTGACGCTCAAACCTTATDesign primers
1248047TTTCACGTTCAAACCTTACTGT-TTTCACGTTCAAACCTTACTGT-TTTCACGTTCAAACCTTACTGTDesign primers
1437448CCGCTT-CCGCTT-CCGCTT-CCGCTTDesign primers
1464456CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAATDesign primers
1605771TTTATTCCT-TTTATTCCT-TTTATTCCTDesign primers
1613985GCGTCGTCAGCCGAA-GCGTCGTCAGCCGAA-GCGTCGTCAGCCGAADesign primers
1860711TTTGCGCGTTTCCGTTACCG-TTTGCGCGTTTCCGTTACCG-TTTGCGCGTTTCCGTTACCG-TTTGCGCGTTTCCGTTACCGDesign primers
2134150TAGTCT-TAGTCT-TAGTCT-TAGTCTDesign primers
2212821GTAAGGTTTGAGCGTCAAAACA-GTAAGGTTTGAGCGTCAAAACA-GTAAGGTTTGAGCGTCAAAACA-GTAAGGTTTGAGCGTCAAAACA-GTAAGGTTTGAGCGTCAAAACADesign primers
2370238TACTGTTTTCACGTTCAAACCT-TACTGTTTTCACGTTCAAACCT-TACTGTTTTCACGTTCAAACCTDesign primers
2445348CCGCAG-CCGCAG-CCGCAG-CCGCAGDesign primers
2538360CAGCCGAAT-CAGCCGAAT-CAGCCGAATDesign primers
2724656CCGCACATT-CCGCACATT-CCGCACATT-CCGCACATTDesign primers
2901458AAACTACCCAGA-AAACTACCCAGA-AAACTACCCAGADesign primers
3035245CCGCTGACACAACAAACTGCA-CCGCTGACACAACAAACTGCA-CCGCTGACACAACAAACTGCADesign primers

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