Microsatellites /Tandem Repeats database

Genome: Gallibacterium anatis UMN179

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
90581ATAATTTATTATCATTAATTGTAAATTATTDesign primers
102671TATTTTTATTTCTATATTTAATTTDesign primers
133757TCAAAAATAAGTAAAAATAATCAAAACTCADesign primers
239873AGCCGAC-AATAGGC-AATAGGC-AATAGGC-AATAGGC-AATAGGC-AATAGGC-AATAGGC-AATAGGCDesign primers
251154GCTGATTTTCTG-TTTGATTTTCTG-TTTGATTTTCTGDesign primers
312583AATATTAACATTGATATTAATATTDesign primers
325661TTGCCTTTTAGCCTTTTCGCCTTTDesign primers
468246TAGAAA-CAGCAC-AAGCAC-AAGCAC-AAGCAC-AAGCAC-AAGCAC-AAGCAC-AAGCAC-AAGCAC-AAGCAC-AAGCAC-AAGCAC-AAGCAC-AAGCAC-AAGCACDesign primers
494731ATTACCACTATTTACCACAATTTACCACTTDesign primers
609105CTCTCR-CTTTTG-CTTTTG-CTTTTG-CTTTTG-CTTTTG-CTTTTG-CTTTTG-CTTTTGDesign primers
634677ATATCGCTGAAAATATCACCGAAAATATCGCCGAAADesign primers
659887CAGCTC-ACGACC-ACGACC-ACGACC-ACGACC-ACGACC-ACGACC-ACGACC-ACGACC-ACGACC-ACGACC-ACGACCDesign primers
670503AAATTAACTTAAATAAAGTTGAATTDesign primers
682401TATTA-GAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTC-AAGTCDesign primers
692275TCTCTC-GCTTTT-GCTTTT-GCTTTT-GCTTTT-GCTTTT-GCTTTT-GCTTTT-GCTTTTDesign primers
737184AAATAACAATAAAAGTAAAAATATDesign primers
742780AGTAAACCTAAACTTTAAAACC-GTTAAACCAAAAATTTAAAACC-GTTAAACCAAAAATTTAAAACC-GTTAAACCAAAAATTTAAAACC-GTTAAACCAAAAATTTAAAACC-GTTAAACCAAAAATTTAAAACCDesign primers
837682GTC-AAA-ATA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTA-GTADesign primers
886142CATCATACCGCCCATTCC-ACCCATACCGCCCATTCC-ACCCATACCGCCCATTCCDesign primers
952751TCTCTC-GCTTTT-GCTTTT-GCTTTT-GCTTTT-GCTTTT-GCTTTT-GCTTTT-GCTTTTDesign primers
999494TGCGATTGCGACTGCAATTGCGATDesign primers
1114528GGA-AAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAG-TAGDesign primers
1138498CCGTGCT-TTTGGCT-TTTGGCT-TTTGGCT-TTTGGCT-TTTGGCT-TTTGGCT-TTTGGCT-TTTGGCTDesign primers
1149692TTCTCT-CTCGCT-TTTGCT-TTTGCT-TTTGCT-TTTGCT-TTTGCT-TTTGCT-TTTGCT-TTTGCT-TTTGCT-TTTGCTDesign primers
1199160TCTCTC-GCTTTT-GCTTTT-GCTTTT-GCTTTT-GCTTTT-GCTTTT-GCTTTT-GCTTTTDesign primers
1263386CTCTCA-CTTTTG-CTTTTG-CTTTTG-CTTTTG-CTTTTG-CTTTTG-CTTTTG-CTTTTGDesign primers
1286475CAAATT-GAGCCT-GAGCCT-GAGCCT-GAGCCT-GAGCCT-GAGCCT-GAGCCT-GAGCCT-GAGCCT-GAGCCT-GAGCCTDesign primers
1306377TTTTTATTTTTCTCACTTAACTTCGTAGGTTTCTCACTTAACTTCGTAGGTTTCTCACTTAACDesign primers
1403276TGCCT-GACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAGDesign primers
1419268TGCCT-GACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAGDesign primers
1425450ACAAATA-AAAAATA-AAAAATA-AAAAATADesign primers
1455442TCG-CCT-ACT-ACT-ACT-ACT-ACT-ACT-ACT-ACT-ACT-ACT-ACT-ACT-ACTDesign primers
1462624TTTTGTTCA-ATTTGTTCA-ATTTGTTCADesign primers
1535339TAC-CTA-CTA-CTA-CTA-CTA-CTA-CTA-CTA-CTA-CTA-CTA-CTA-CTA-CTADesign primers
1536498GCAGAGAAAGCGGCAGAAACAGCGGAAGAGAAAGCGDesign primers
1552010GGATGGCGG-CGATGGCGG-CGATGGCGGDesign primers
1560509CGTACCGGACGTGCCGGACGTGCCGGADesign primers
1681832GTGAAACCAATCAGCGGGGTACCAATCAGCGGGGTACCAATCAGCDesign primers
1778362GATTG-TTTTG-TTTTG-TTTTG-TTTTG-TTTTGDesign primers
2006064AAAAAAGAAAAAAATAGAAGAAAAAAATAADesign primers
2031150AGAGCAGTAAAAGCAGTAAAAGCAGTADesign primers
2054095TGTTTTTATTTTTGATTTTGTTATDesign primers
2072532TT-TT-TT-GT-TT-TT-AT-TT-TT-AT-AT-TT-TDesign primers
2265076TTTTAATTTTCAATTTAATTTTTADesign primers
2273723AA-AT-AA-AA-AA-AT-GA-AA-AA-AT-AA-AADesign primers
2295417TT-TT-AT-TT-TA-AT-AT-TT-AT-TT-GT-ATDesign primers
2347103GCGGAAGCAGCGCCGGCTCCGGCAGCAGCACCGGCTCCGGCAGCAGCACCGGCTDesign primers
2378316GTAGCAGTGGCAGTAGCAGTAGCADesign primers
2508703TTTTTATTCGTTTTTATGCTTTTTTCATCGDesign primers
2587106GGAAA-AGAAA-AGAAA-AGAAA-AGAAADesign primers
2596175TATTT-ACAAA-ACAAA-ACAAA-ACAAA-ACAAA-ACAAA-ACAAA-ACAAA-ACAAA-ACAAA-ACAAA-ACAAA-ACAAA-ACAAADesign primers
2682070AAAGCAAGAGCCAAAACCAACAGCAGAGCAAGAGCCAAAGCCAACAGCAGGGCAAGAGTCAAAGCCAACAGCDesign primers

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