Microsatellites /Tandem Repeats database

Genome: Fluviicola taffensis DSM 16823

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
10534ATTTTGAA-CTTTTGAA-CTTTTGAA-CTTTTGAA-CTTTTGAADesign primers
15259TCATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGADesign primers
34775AGGTTCAAA-GGGTTCAAA-GGGTTCAAA-GGGTTCAAADesign primers
34823AAATATAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTATDesign primers
51235GATTTTGGTTTTGATTCTGATTTTDesign primers
64918CCACAGAGGAACACAGATGAACACAGAGGTDesign primers
168394ACGATTA-ATTCCTA-ATTCCTA-ATTCCTA-ATTCCTA-ATTCCTA-ATTCCTA-ATTCCTA-ATTCCTADesign primers
168912ATATTCG-TAATTCG-TAATTCG-TAATTCG-TAATTCG-TAATTCGDesign primers
191109AAATCGT-AATTCGT-AATTCGT-AATTCGT-AATTCGTDesign primers
199370AATTCAAAATGCAAAAGTCAAAATGCAADesign primers
288567CAATTTTG-AACATTTG-AACATTTG-AACATTTG-AACATTTG-AACATTTGDesign primers
304314CAAT-GAAT-GAAT-GAAT-GAAT-GAATDesign primers
470897TTTTCATCCCTTTTCTCCCCATTTCATCCTDesign primers
554454ATTTCCATACTTCCATTTTTCCATDesign primers
562464CGGGATCA-ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCADesign primers
564160GAAA-AAAG-GAAG-AAAG-AAAA-AAAGDesign primers
605017TCAATTTG-AACATTTG-AACATTTG-AACATTTG-AACATTTG-AACATTTGDesign primers
612059TTTTGAAC-TTTTGAAC-ATTTGAACDesign primers
671851AAAATTGATTGAAATTTATTAGAGTTGATTDesign primers
683315TCTTTTACTCTTATACTCTTTTTCDesign primers
714014TTGATTTG-AACATTTG-AACATTTG-AACATTTG-AACATTTG-AACATTTG-AACATTTG-AACATTTGDesign primers
716557CAAATAA-TTCGTAA-TTCGTAA-TTCGTAA-TTCGTAA-TTCGTAA-TTCGTAA-TTCGTAA-TTCGTAADesign primers
752966GGAAAAT-TCCTAAT-TCCTAAT-TCCTAAT-TCCTAAT-TCCTAAT-TCCTAAT-TCCTAAT-TCCTAATDesign primers
753455CAAATTC-GTAATTC-GTAATTC-GTAATTC-GTAATTC-GTAATTCDesign primers
970524TTTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAACDesign primers
974384GCGAATTG-GCGAATTG-GCAAATTGDesign primers
993407TTCAACAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTATDesign primers
1028493TGGTTCAAA-GGGTTCAAA-GGGTTCAAA-GGGTTCAAADesign primers
1028540AAAAAAAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTATDesign primers
1090213AAGAGAG-AATTACG-AATTACG-AATTACG-AATTACG-AATTACG-AATTACG-AATTACG-AATTACGDesign primers
1090277ATTACTAATTACGAATTACTAATTACTTDesign primers
1159895TTCAATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTTDesign primers
1168450GATCAATAGTTCAATAGTTCAATADesign primers
1168539CTTTGAACT-TTTTGAACT-TTTTGAACTDesign primers
1180063GCATTTGAATTTGGATTTGCAATTDesign primers
1249771CAGGGTTCA-AAGGGTTCA-AAGGGTTCADesign primers
1249814TCTATATT-GAACTATT-GAACTATT-GAACTATT-GAACTATT-GAACTATT-GAACTATT-GAACTATT-GAACTATTDesign primers
1251574AGATCCTAAAATCTTAAAGTCCTAAAGTCTTAAAATCCTAAAGTCCTADesign primers
1260028TCCAATTCCAAAACCAATTCCATTDesign primers
1268191TCTAATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTTDesign primers
1300790TCTTCATTCTTAATTCTACATTCTTAATDesign primers
1334724AAACTTTT-GAACTTTT-GAACTTTT-GAACTTTTDesign primers
1337183AAACCATT-TGAACATT-TGAACATT-TGAACATT-TGAACATT-TGAACATTDesign primers
1368084CACCGCCAGCACCACCAGCACCGCCTGDesign primers
1382342GATTATTTATCGGAAGCAGTGCCTCACAATTTATCAGAAGCAGTGCCTCTCAATTTATCGGAAGCAGTGCCTDesign primers
1401558ATCAATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTT-GAACATTTDesign primers
1508529AGGAATGT-TCAAATGT-TCAAATGT-TCAAATGT-TCAAATGT-TCAAATGTDesign primers
1534664TTAAACCTAAACTGAAACCTAAACDesign primers
1547031AATTTGAA-CATTTGAA-CATTTGAA-CATTTGAA-CATTTGAADesign primers
1584831AAATATAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTATDesign primers
1668512TAAAAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATADesign primers
1812223CAGTTCAAA-GAGTTCAAA-GAGTTCAAA-GAGTTCAAADesign primers
1935857AAATATCAAAAAACACCAAAAATTATCAATDesign primers
1949389TATTGCTATTGTAATTGCTATTGTDesign primers
2001444AAAATGGTT-CAAATGGTT-CAAATGGTT-CAAATGGTTDesign primers
2014075AATTGTAATTCTGATTGTAATTATDesign primers
2038359TATTTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGADesign primers
2108563TCCTGC-TCCTGC-TTCTGC-TCCTGCDesign primers
2260507ACTGTTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTCDesign primers
2307072TAAAAGTT-CAAAAGTT-CAAAAGTT-CAAAAGTTDesign primers
2328117GATTTAAAAGT-TCAATAAAAGT-TCAATAAAAGT-TCAATAAAAGT-TCAATAAAAGT-TCAATAAAAGTDesign primers
2328210ACCTTTGAA-CCCTTTGAA-CCCTTTGAA-CCCTTTGAADesign primers
2483921GCTGGTGGTGGTGCTGGAGCTGGTDesign primers
2525720AATTTAAA-TGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAADesign primers
2628141ACTTCTCACTTTTCAATTCTCAATTCTCDesign primers
2674509TATTGATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATADesign primers
2704516GAAATGAAACAAAATTAAATGAAGTDesign primers
2795108AGTTCAAT-CGTTCAAT-CGTTCAATDesign primers
2901751TTTTAGAA-ATGTTCAA-ATGTTCAA-ATGTTCAA-ATGTTCAA-ATGTTCAA-ATGTTCAA-ATGTTCAA-ATGTTCAADesign primers
2949069AGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAADesign primers
2952633TTCTATGT-TCCTATGT-TCCTATGT-TCCTATGTDesign primers
2974173TGGTGGAATGGGAGTTGGAATGGGGGTTGGAATGGGDesign primers
2993588AGATTTTAGGATTTTAAGACTTTAAGATTTCADesign primers
3000319GTAAATA-ATTACGA-ATTACGA-ATTACGA-ATTACGA-ATTACGA-ATTACGA-ATTACGA-ATTACGADesign primers
3048452TATCGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTCDesign primers
3106215AGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAADesign primers
3186771ATAATTC-GTAATTC-GTAATTC-GTAATTCDesign primers
3198432GGAATAA-TTAATTA-CGAATTA-CGAATTA-CGAATTA-CGAATTA-CGAATTA-CGAATTA-CGAATTA-CGAATTA-CGAATTA-CGAATTADesign primers
3203599CTGCTGGCG-GTGCTGGCG-GTGCTGGCGDesign primers
3203877GGTCGC-GGTGGC-GGTGGC-GGTGGCDesign primers
3203951TGGTGGATCTGGTGGGTCCGGTGGATCDesign primers
3203979GGAGGTGGCGGTGCAGGTGCAGGTDesign primers
3268024TTATTGGGTTTTGTTCGGTTTTATTGGTTCDesign primers
3271382AAAGAAGAAGAAAGAGAAAAAGAADesign primers
3271452TTAGAAT-TACGAAT-TACGAAT-TACGAAT-TACGAAT-TACGAAT-TACGAAT-TACGAATDesign primers
3271547TTAATTA-GGAATTA-GGAATTA-GGAATTA-GGAATTA-GGAATTADesign primers
3286885AAAGGTTCAAACAAGTTCAAAAAGTTTAAADesign primers
3292509AAAGAGTTCAAATGGGTTCAAAGGAGTTCADesign primers
3304771AATTCGTAATTCGGCATTCGTAATTCGTDesign primers
3306834GGTTCAAAACGTTCAAAAGGTTCAAAADesign primers
3306880TTTAAACTTTTGAACTTTTAAACTDesign primers
3313459CTTTTAA-TTAGGAA-TTAGGAA-TTAGGAA-TTAGGAA-TTAGGAA-TTAGGAA-TTAGGAA-TTAGGAADesign primers
3331188AATTTTGCATTTTGAATTTTGCATTTTGDesign primers
3372944ATGCTTCGCGTCCCAACATTTCATGGATCACTTCCCAACATTTCATGCGTTGCGTCTCAACATTTTDesign primers
3410924AGAAGTTC-AAAAGTTC-AAAAGTTC-AAAAGTTC-AAAAGTTCDesign primers
3442262AAGGATTGAGTATGGATTAAGTATGGATAGAGTDesign primers
3451016TACAGAACTTAC-AGCAGAACTTAC-AGCAGAACTTAC-AGCAGAACTTACDesign primers
3471989TGATAAGGGTAGTGATAATAGTAGTGATAAAGGTCGDesign primers
3482826AATAAAAAATTAAAAAAATGAAAADesign primers
3488433GAAAATTCAGATGAAAATTCAGACGATAATTCAAATDesign primers
3496557TT-TT-TT-CT-TT-TT-TT-TT-CC-GT-TT-TT-TT-TC-TTDesign primers
3594557TTATTTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGADesign primers
3597718CCAAATTCCCGAATTCGCAAATTCDesign primers
3691556AAAGAAAAAAAGAGAAAACGAAAADesign primers
3742687TCCTCTGTGTTCATCCGTGTTCCTCGGTGGDesign primers
3742898TCCTCTGTGTTCATCCGTGTTCCTCGGTGGDesign primers
3745065TTTAATTT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTAT-TGAACTATDesign primers
3772785TGAAAGTT-CAAATGTT-CAAATGTT-CAAATGTT-CAAATGTT-CAAATGTTDesign primers
3789686AGAAAAGAAGAGCAAACAAAAGAACDesign primers
3801673AATTACGAATTCCGAATTACGAATTCCGDesign primers
3896168ATAGTAA-TTCGTAA-TTCGTAA-TTCGTAA-TTCGTAA-TTCGTAADesign primers
3909195AA-AA-AA-TA-AA-AG-AA-AA-TA-AA-AA-AA-ADesign primers
3937906TTGTTCAAAAAAGTTCAAAAGTGTTCAAGADesign primers
3937966TTTAATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTGDesign primers
3938756TGATTTTATTGATTTCATTCATTTTATDesign primers
3964175TGAATTG-CGAATTG-CGAATTG-CGAATTGDesign primers
4042338CTGAACGAGCTGAACAAGCAGAACGAGDesign primers
4044532AAATTTGC-TAATTTGC-TAATTTGCDesign primers
4103951AAAATTTG-AACATTTG-AACATTTG-AACATTTG-AACATTTGDesign primers
4173335AAAATGTT-CAAATGTT-CAAATGTT-CAAATGTTDesign primers
4317599TTTTTTTTGTTTTTCGTTTTCTTTTDesign primers
4347429GTTAAAAAT-GGTTCAAAT-GGTTCAAAT-GGTTCAAAT-GGTTCAAAT-GGTTCAAATDesign primers
4371754CTATTTGAACATTTGAACATTTGAACATTTGAACATTTGAACATTTTADesign primers
4372131ACTTTGAAC-TCTTTGAAC-TCTTTGAAC-TCTTTGAACDesign primers
4446194ATTGTTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTCDesign primers
4448556CATATAA-TTCCTAA-TTCCTAA-TTCCTAA-TTCCTAA-TTCCTAA-TTCCTAA-TTCCTAA-TTCCTAADesign primers
4523677AATTCAAAATTAAAAATGCAAAATTGAADesign primers
4541044ATTGAACT-ATTGAACT-ATTAAACTDesign primers
4600504TCAAAAAAAATTAAACAAAATCAAACAAATDesign primers
4606154TGTTGGTGTAGGTGTGGGAGTTGGDesign primers
4606368AAGGTTCAA-AGGGTTCAA-AGGGTTCAA-AGGGTTCAADesign primers
4606419TCTATATT-GAACTATT-GAACTATT-GAACTATT-GAACTATT-GAACTATT-GAACTATT-GAACTATT-GAACTATT-GAACTATT-GAACTATT-GAACTATTDesign primers

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