Microsatellites /Tandem Repeats database

Genome: Fluviicola taffensis DSM 16823

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
10535TTTTGAAC-TTTTGAAC-TTTTGAAC-TTTTGAACDesign primers
15260CATTTGAA-CATTTGAA-CATTTGAA-CATTTGAA-CATTTGAADesign primers
34776GGTTCAAAG-GGTTCAAAG-GGTTCAAAG-GGTTCAAAGDesign primers
34825ATATATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTGDesign primers
168397ATTAATT-CCTAATT-CCTAATT-CCTAATT-CCTAATT-CCTAATT-CCTAATT-CCTAATT-CCTAATTDesign primers
168913TATTCGT-AATTCGT-AATTCGT-AATTCGT-AATTCGT-AATTCGTDesign primers
191112TCGTAAT-TCGTAAT-TCGTAAT-TCGTAAT-TCGTAATDesign primers
288570TTTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAACDesign primers
562466GGATCAAT-AGTTCAAT-AGTTCAAT-AGTTCAAT-AGTTCAAT-AGTTCAAT-AGTTCAAT-AGTTCAAT-AGTTCAATDesign primers
605019AATTTGAA-CATTTGAA-CATTTGAA-CATTTGAA-CATTTGAA-CATTTGAADesign primers
714016GATTTGAA-CATTTGAA-CATTTGAA-CATTTGAA-CATTTGAA-CATTTGAA-CATTTGAA-CATTTGAADesign primers
716559AATAATT-CGTAATT-CGTAATT-CGTAATT-CGTAATT-CGTAATT-CGTAATT-CGTAATT-CGTAATTDesign primers
752969AAATTCC-TAATTCC-TAATTCC-TAATTCC-TAATTCC-TAATTCC-TAATTCC-TAATTCCDesign primers
753456AAATTCG-TAATTCG-TAATTCG-TAATTCG-TAATTCG-TAATTCGDesign primers
970525TTTGAACA-TTTGAACA-TTTGAACA-TTTGAACA-TTTGAACADesign primers
993410AACATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGADesign primers
1028494GGTTCAAAG-GGTTCAAAG-GGTTCAAAG-GGTTCAAAGDesign primers
1028542AAAAATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTGDesign primers
1090217GAGAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATTDesign primers
1159897CAATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGADesign primers
1168452TCAATAGT-TCAATAGT-TCAATAGTDesign primers
1168540TTTGAACTT-TTTGAACTT-TTTGAACTTDesign primers
1249772AGGGTTCAA-AGGGTTCAA-AGGGTTCAADesign primers
1249816TATATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGADesign primers
1268193TAATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGADesign primers
1334725AACTTTTG-AACTTTTG-AACTTTTGDesign primers
1337185ACCATTTG-AACATTTG-AACATTTG-AACATTTG-AACATTTG-AACATTTGDesign primers
1382346ATTTATCGGAAGCAGTGCCTCACAATTTATCAGAAGCAGTGCCTCTCAATTTATCGGAAGCAGTGCCTCTCADesign primers
1401560CAATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGA-ACATTTGADesign primers
1508531GAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTCDesign primers
1547032ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAACDesign primers
1584833ATATATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTG-AACTATTGDesign primers
1668514AAAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGTDesign primers
1812224AGTTCAAAG-AGTTCAAAG-AGTTCAAAG-AGTTCAAAGDesign primers
2001445AAATGGTTC-AAATGGTTC-AAATGGTTC-AAATGGTTCDesign primers
2038361TTTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAACDesign primers
2260510GTTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAADesign primers
2307073AAAAGTTC-AAAAGTTC-AAAAGTTC-AAAAGTTCDesign primers
2328119TTTAAAAGTTC-AATAAAAGTTC-AATAAAAGTTC-AATAAAAGTTC-AATAAAAGTTC-AATAAAAGTTCDesign primers
2328211CCTTTGAAC-CCTTTGAAC-CCTTTGAAC-CCTTTGAACDesign primers
2525725AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTCDesign primers
2674511TTGATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGTDesign primers
2901756GAAATGTT-CAAATGTT-CAAATGTT-CAAATGTT-CAAATGTT-CAAATGTT-CAAATGTT-CAAATGTTDesign primers
2949070GTTCAAAT-GTTCAAAT-GTTCAAAT-GTTCAAATDesign primers
2952635CTATGTTC-CTATGTTC-CTATGTTCDesign primers
2974176TGGAATGGGAGTTGGAATGGGGGTTGGAATGGGAATDesign primers
3000322AATAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATTDesign primers
3048455CGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAA-TGTTCAAADesign primers
3106216GTTCAAAT-GTTCAAAT-GTTCAAATDesign primers
3186772TAATTCG-TAATTCG-TAATTCG-TAATTCGDesign primers
3198438ATTAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATT-ACGAATTDesign primers
3203600TGCTGGCGG-TGCTGGCGG-TGCTGGCGGDesign primers
3203881GCGGTG-GCGGTG-GCGGTG-GCGGTGDesign primers
3271454AGAATTA-CGAATTA-CGAATTA-CGAATTA-CGAATTA-CGAATTADesign primers
3271548TAATTAG-GAATTAG-GAATTAG-GAATTAG-GAATTAG-GAATTAGDesign primers
3313462TTAATTA-GGAATTA-GGAATTA-GGAATTA-GGAATTA-GGAATTA-GGAATTA-GGAATTA-GGAATTADesign primers
3410926AAGTTCAA-AAGTTCAA-AAGTTCAA-AAGTTCAA-AAGTTCAADesign primers
3442264GGATTGAGTATGGATTAAGTATGGATAGAGTATDesign primers
3451017ACAGAACTTACA-GCAGAACTTACA-GCAGAACTTACA-GCAGAACTTACADesign primers
3594559ATTTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAACDesign primers
3745068AATTTTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGADesign primers
3772787AAAGTTCA-AATGTTCA-AATGTTCA-AATGTTCA-AATGTTCA-AATGTTCADesign primers
3896169TAGTAAT-TCGTAAT-TCGTAAT-TCGTAAT-TCGTAAT-TCGTAATDesign primers
3937968TAATTGAA-CTATTGAA-CTATTGAA-CTATTGAA-CTATTGAA-CTATTGAA-CTATTGAA-CTATTGAA-CTATTGAA-CTATTGAA-CTATTGAA-CTATTGAA-CTATTGAA-CTATTGAA-CTATTGAA-CTATTGAA-CTATTGAA-CTATTGAADesign primers
3964176GAATTGC-GAATTGC-GAATTGC-GAATTGCDesign primers
4103954ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAACDesign primers
4173336AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTCDesign primers
4347433AAAATGGTT-CAAATGGTT-CAAATGGTT-CAAATGGTT-CAAATGGTT-CAAATGGTTDesign primers
4371756ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAACDesign primers
4372132CTTTGAACT-CTTTGAACT-CTTTGAACT-CTTTGAACTDesign primers
4446198TTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATA-GTTCAATADesign primers
4448558TATAATT-CCTAATT-CCTAATT-CCTAATT-CCTAATT-CCTAATT-CCTAATT-CCTAATT-CCTAATTDesign primers
4606370GGTTCAAAG-GGTTCAAAG-GGTTCAAAGDesign primers
4606421TATATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGA-ACTATTGADesign primers

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