Microsatellites /Tandem Repeats database

Genome: Fluviicola taffensis DSM 16823

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
10535TTTTGAAC-TTTTGAAC-TTTTGAAC-TTTTGAACDesign primers
15260CATTTGAA-CATTTGAA-CATTTGAA-CATTTGAA-CATTTGAADesign primers
34776GGTTCAAAG-GGTTCAAAG-GGTTCAAAG-GGTTCAAAGDesign primers
34828TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAACDesign primers
168399TAATTCC-TAATTCC-TAATTCC-TAATTCC-TAATTCC-TAATTCC-TAATTCC-TAATTCC-TAATTCCDesign primers
168914ATTCGTA-ATTCGTA-ATTCGTA-ATTCGTA-ATTCGTA-ATTCGTA-ATTCGTADesign primers
191112TCGTAAT-TCGTAAT-TCGTAAT-TCGTAAT-TCGTAATDesign primers
288571TTTGAACA-TTTGAACA-TTTGAACA-TTTGAACA-TTTGAACA-TTTGAACA-TTTGAACADesign primers
562469TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGT-TCAATAGTDesign primers
605020ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAACDesign primers
714017ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAACDesign primers
716561TAATTCG-TAATTCG-TAATTCG-TAATTCG-TAATTCG-TAATTCG-TAATTCG-TAATTCG-TAATTCG-TAATTCGDesign primers
752970AATTCCT-AATTCCT-AATTCCT-AATTCCT-AATTCCT-AATTCCT-AATTCCT-AATTCCTDesign primers
753457AATTCGT-AATTCGT-AATTCGT-AATTCGT-AATTCGT-AATTCGTDesign primers
970525TTTGAACA-TTTGAACA-TTTGAACA-TTTGAACA-TTTGAACADesign primers
993413ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACTDesign primers
1028494GGTTCAAAG-GGTTCAAAG-GGTTCAAAG-GGTTCAAAGDesign primers
1028546ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACTDesign primers
1090219GAATTAC-GAATTAC-GAATTAC-GAATTAC-GAATTAC-GAATTAC-GAATTAC-GAATTAC-GAATTACDesign primers
1159899ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAACDesign primers
1168452TCAATAGT-TCAATAGT-TCAATAGTDesign primers
1168540TTTGAACTT-TTTGAACTT-TTTGAACTTDesign primers
1249772AGGGTTCAA-AGGGTTCAA-AGGGTTCAADesign primers
1249818TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAACDesign primers
1268195ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAACDesign primers
1334725AACTTTTG-AACTTTTG-AACTTTTGDesign primers
1337187CATTTGAA-CATTTGAA-CATTTGAA-CATTTGAA-CATTTGAA-CATTTGAADesign primers
1401562ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAACDesign primers
1508532AATGTTCA-AATGTTCA-AATGTTCA-AATGTTCA-AATGTTCA-AATGTTCA-AATGTTCADesign primers
1547032ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAACDesign primers
1584836TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAACDesign primers
1668516AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTC-AATAGTTCDesign primers
1812224AGTTCAAAG-AGTTCAAAG-AGTTCAAAG-AGTTCAAAGDesign primers
2001445AAATGGTTC-AAATGGTTC-AAATGGTTC-AAATGGTTCDesign primers
2038362TTTGAACA-TTTGAACA-TTTGAACA-TTTGAACA-TTTGAACADesign primers
2260512TTCAAATG-TTCAAATG-TTCAAATG-TTCAAATG-TTCAAATG-TTCAAATG-TTCAAATG-TTCAAATG-TTCAAATG-TTCAAATG-TTCAAATGDesign primers
2307073AAAAGTTC-AAAAGTTC-AAAAGTTC-AAAAGTTCDesign primers
2328121TAAAAGTTCAA-TAAAAGTTCAA-TAAAAGTTCAA-TAAAAGTTCAA-TAAAAGTTCAA-TAAAAGTTCAA-TAAAAGTTCAADesign primers
2328211CCTTTGAAC-CCTTTGAAC-CCTTTGAAC-CCTTTGAACDesign primers
2525725AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTCDesign primers
2674514ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCA-ATAGTTCADesign primers
2901757AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTCDesign primers
2949070GTTCAAAT-GTTCAAAT-GTTCAAAT-GTTCAAATDesign primers
2952635CTATGTTC-CTATGTTC-CTATGTTCDesign primers
3000325AATTACG-AATTACG-AATTACG-AATTACG-AATTACG-AATTACG-AATTACG-AATTACG-AATTACGDesign primers
3048456GTTCAAAT-GTTCAAAT-GTTCAAAT-GTTCAAAT-GTTCAAAT-GTTCAAATDesign primers
3106216GTTCAAAT-GTTCAAAT-GTTCAAATDesign primers
3186772TAATTCG-TAATTCG-TAATTCG-TAATTCGDesign primers
3198441AATTACG-AATTACG-AATTACG-AATTACG-AATTACG-AATTACG-AATTACG-AATTACG-AATTACG-AATTACGDesign primers
3203600TGCTGGCGG-TGCTGGCGG-TGCTGGCGGDesign primers
3203881GCGGTG-GCGGTG-GCGGTG-GCGGTGDesign primers
3271455GAATTAC-GAATTAC-GAATTAC-GAATTAC-GAATTAC-GAATTAC-GAATTACDesign primers
3271549AATTAGG-AATTAGG-AATTAGG-AATTAGG-AATTAGG-AATTAGG-AATTAGGDesign primers
3313464AATTAGG-AATTAGG-AATTAGG-AATTAGG-AATTAGG-AATTAGG-AATTAGG-AATTAGG-AATTAGGDesign primers
3410926AAGTTCAA-AAGTTCAA-AAGTTCAA-AAGTTCAA-AAGTTCAADesign primers
3451018CAGAACTTACAG-CAGAACTTACAG-CAGAACTTACAG-CAGAACTTACAGDesign primers
3594561TTGAACTA-TTGAACTA-TTGAACTA-TTGAACTA-TTGAACTA-TTGAACTA-TTGAACTA-TTGAACTADesign primers
3745072TTGAACTA-TTGAACTA-TTGAACTA-TTGAACTA-TTGAACTA-TTGAACTA-TTGAACTA-TTGAACTA-TTGAACTA-TTGAACTA-TTGAACTADesign primers
3772790GTTCAAAT-GTTCAAAT-GTTCAAAT-GTTCAAAT-GTTCAAATDesign primers
3896171GTAATTC-GTAATTC-GTAATTC-GTAATTC-GTAATTCDesign primers
3937970ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACT-ATTGAACTDesign primers
3964176GAATTGC-GAATTGC-GAATTGC-GAATTGCDesign primers
4103954ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAACDesign primers
4173336AAATGTTC-AAATGTTC-AAATGTTC-AAATGTTCDesign primers
4347434AAATGGTTC-AAATGGTTC-AAATGGTTC-AAATGGTTC-AAATGGTTC-AAATGGTTCDesign primers
4371756ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAAC-ATTTGAACDesign primers
4372132CTTTGAACT-CTTTGAACT-CTTTGAACT-CTTTGAACTDesign primers
4446199TTCAATAG-TTCAATAG-TTCAATAG-TTCAATAG-TTCAATAG-TTCAATAG-TTCAATAGDesign primers
4448560TAATTCC-TAATTCC-TAATTCC-TAATTCC-TAATTCC-TAATTCC-TAATTCC-TAATTCC-TAATTCCDesign primers
4606370GGTTCAAAG-GGTTCAAAG-GGTTCAAAGDesign primers
4606423TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAAC-TATTGAACDesign primers

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