Microsatellites /Tandem Repeats database

Genome: Spirochaeta sp. Buddy

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
247276CAAAAAGTCTCCAGTGGATTACC-GCAAAAGTCTCCAGTGGATTACC-GCAAAAGTCTCCAGTGGATTACC-GCAAAAGTCTCCAGTGGATTACCDesign primers
247372AAGTGTCTCCAGTGGATTACCGC-AAAAGTCTCCAGTGGATTACCGC-AAAAGTCTCCAGTGGATTACCGC-AAAAGTCTCCAGTGGATTACCGCDesign primers
1868498GGTGGTGGTGGTTTTAGTGGCGGATCTGGTGGTGGTTTTAGTGGCGGAGCTGGTGGTGGTTTTAGTGGCGGADesign primers
2190395ATTTACTAATATTTATTAATAATTACTAATDesign primers
2199610CTACGGTAGGTTCTTCCA-CTATGGTAGGTTCTTCCA-CTACGGCAGGTTCTTCCA-CTACGGTAGGTTCTTCCA-CTATGGTAGGTTCTTCCA-CTATGGTAGGTTCTTCCA-CTATGGTAGGTTCTTCCA-CTATGGTAGGTTCTTCCADesign primers
2199755TCTGGTAGGTTCTTCCAC-TATGGTAGGTTCTTCCAC-TATGGTAGGTTCTTCCAC-TATGGTAGGTTCTTCCACDesign primers
2200468CGGGCAGCTCTTCCTCAA-CAGGCAGCTCTTCCTCAA-CAGGCAGCTCTTCCTCAA-CAGGCAGCTCTTCCTCAA-CAGGCAGCTCTTCCTCAA-CAGGCAGCTCTTCCTCAA-CAGGCAGCTCTTCCTCAADesign primers
2200595AGACAGCTCTTCCTCAACAGGCAGCTCTTCCTCAACAGACAGCTCTTCCTCAACAGGCAGCTCTTCCTCAACAGACAGCTCTTCCTCAACAGGCAGCTCTTCCTCAACAGGCAGCTCTTCCTCAACDesign primers
2200722GGCAGTTCTTCCTCTACGGGCAGCTCTTCCTCTACGGGCAGCTCTTCCTCTACGDesign primers
2704674CTCTGCATATTT-ATCTGCATATTT-ATCTGCATATTTDesign primers
3055148AGCATCATCCAGCTCTTC-TGCATCATCCAGCTCTTC-TGCATCATCCAGCTCTTCDesign primers
3055203GTTTCAGGCAGCTCTTCT-GTTTCAGGCAGCTCTTCT-GTTTCAGGCAGCTCTTCT-GTTTCAGGCAGCTCTTCT-GTTTCAGGCAGCTCTTCT-GTTTCAGGCAGCTCTTCTDesign primers
3055312TTTCGGGCAGTTCTTCTG-TTTCGGGCAGTTCTTCTG-TTTCGGGCAGTTCTTCTGDesign primers
3055373CAGCTCTTCTGTTTCAGG-CAGCTCTTCTGTTTCAGG-CAGCTGTTCTGTTTCAGG-CAGCTCTTCTGTTTCAGGDesign primers
3055475TTCGGGCAGTTCTTCTGT-TTCGGGCAGTTCTTCTGT-TTCAGGCAGTTCTTCTGTDesign primers

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