Microsatellites /Tandem Repeats database

Genome: Arthrobacter phenanthrenivorans Sphe3

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
21145GGCGTCGGTGTCGGCGTTGGCGTGDesign primers
23408GGGTGGGAGTGGGGGTCGGTGTGGDesign primers
28430CGTCCT-TGTCCT-TGTCCT-TGTCCTDesign primers
74340GCGGCGGCAGCGGCGGTGGAGGCGDesign primers
245775AAAAAGCCGGACCAAGCCGGACCAAGCCGGDesign primers
298607GCAGGCGGGGACAGTTCAGGCCGGGACACTTCAGGCGGGGACAAGTCAGGCGGCGACACTDesign primers
343837CGAGAT-CGAGAT-CGGGAT-CGGGATDesign primers
379738GAGACGGAGGTGCAGGAAGCGGAGGTGAAGGAAGCGGAGGTGCCGDesign primers
415534CCATAGCCTCCAAA-GCCTAGCCTCCAAA-GCCTAGCCTCCAAA-GCCTAGCCTCCAAA-GCCTAGCCTCCAAA-GCCTAGCCTCCAAA-GCCTAGCCTCCAAA-GCCTAGCCTCCAAA-GCCTAGCCTCCAAA-GCCTAGCCTCCAAA-GCCTAGCCTCCAAADesign primers
418405CGTGCCAGAAGTCCCCGCGCCGGAAGTCCCCGTTCCGGAAGTTCCCGTTCCCGTAGTCCCDesign primers
432908CGGCGCCGACGGTTCCGGCACGGGCGGTTCCGGCGCTGACCATTCDesign primers
450960CCGCGGCGGCCAAGTCCAGCGCGGCCAAGTCCACTACGGCCAAGTDesign primers
451016AAGACGGCCGCCAAGCCGGCGGCCAAGACCACCGCCDesign primers
462354GGTCCCGCT-TGTCCCGCT-TGTCCCGCTDesign primers
484153ACGACTACGGCTACGACGACGTCTDesign primers
521151GTGCGGGTGCCGGAGCGGGTGCTGDesign primers
525297GCA-GGC-GGC-GCT-GGC-GGC-GGA-GGC-GGCDesign primers
561261TCATCGACATCGCCATCGGCATCGTCATGGDesign primers
600517ACACCGCCACCGACCCCGACGCCGDesign primers
600616ACGCCGACCCCGACGCCGACCCCGACGCCAACGCCAACGCCAACGCCGDesign primers
600698CGCCGTCGCCGACCCCGTCGCCGADesign primers
629608CGACAA-GGACAA-GGACAA-GGACAADesign primers
652573ACGGCCAAGGCCACGGTCACGGCADesign primers
733224CGGGCGCGGGCTCGGGAGCGGGAGDesign primers
775473CGGCCCACCAG-CGGCCCACCAG-CGGCGCACCGGDesign primers
817047AACACACACAC-CACCCACACAC-CACCCACACAC-CACCCACACACDesign primers
851863GCCCAG-GCCCAG-GCCCTG-GTCCAGDesign primers
919382ATCCCCCTTGCCGCTGTTCCCCGTGCCGCTGTTCCCCGTGCCGCTDesign primers
942227TTTCCTGCGGATCACCTTCCTGCGGCTCTCCTTCCTGCGGATCTCDesign primers
956754GGTGCGGCCTGAACCTGGGCGGCCTGGACCGGTGCGGCCTGGACGDesign primers
1022619GCGCCATCAGGAAACACGCCAGCAGGAAACACGCCAGCAGGAACCDesign primers
1027745TTGGTCTA-TTGGTCTA-TTGGTTTADesign primers
1043491GCAGCGCCGCCCGCACCAGCTCCGCCCGCCCCAGCTCCGCCAGCADesign primers
1123682CTTCGTCGTCGTCTTCATCTTCTTDesign primers
1147961CGACCG-CGACGG-CGACAC-CGACGG-CGACGG-CGACTGDesign primers
1151551GGGCTG-GGGCTG-GGGCAG-GGACTGDesign primers
1244493CCAGTC-CCAGTC-CCAGCC-CCAGTCDesign primers
1254502TACGGCCAGAATCCCTACGGCCAGGCCCCCTACGGCCAGCAGCCGDesign primers
1265464GTCCTG-TGGCTG-TGGCTG-TGGCTG-TGGCTG-TGGCTG-TGGCTG-TGGCTG-TGGCTGDesign primers
1388870CAACCGGGCAGGACACGGCCGGACAGGACATGGCCGGGCAGGACACAGCCGGACAGGACATGGCCGGGCAGGACADesign primers
1391061GC-GC-CT-TC-GC-CT-GC-GC-CC-GC-GC-CCDesign primers
1519133ACCGGGACCGTGACCAGGACCTGGDesign primers
1533289GGCGCCGGCCCCGCCGCCGGTGCCDesign primers
1556714AGAAGCACCCAAGCAGGAGGCACCAAAGCAGGAGGCACCCAAGCADesign primers
1590666CCACACCCCACCAGAACACAGCACADesign primers
1699557TGCGGGCGCTTCCTGTGCGGGTGCTTCTTCAGCCGGTGCTTCCTGDesign primers
1706560GCCGTTCCGTGGATGCTGCCCGTTCCGCGGATGCCGGCCGTTCAGTGGATGCTGCCCGTCCCGTGGATGATGDesign primers
1751735CCCATGCCCAGGCCCACGCACATGDesign primers
1770012TCCGACCGGACCAGCTCCGGCCGGACCAGTTCCGACCCCGCCAGCDesign primers
1798540GTGGTGCCGGAGGTGGTGGCAGAGGAGGTGCCGGTGDesign primers
1856737CCCACGGCCACGCCGACGCCCGCGDesign primers
1902156GCACCGGCACCTGAACCGGCACCCDesign primers
1910236GCCAAG-GCCAAG-GCCCAG-GCCCAGDesign primers
2024071GTTTTTGTAGGCGGCT-CAGTTTGTAGGCGGCT-CAGTTTGTAGGCGGCTDesign primers
2165643CATGCTGTACATCGTCATGGTGCACATCGTCATGGTGCACGTCGTDesign primers
2212983AACGATATACAACGATACTCAACGATACATDesign primers
2220053TTCCACCTTTCCTGTTCCCGCCTGTCCTGTTCCCACCTGTCCTGGDesign primers
2230078CTACCCGGCGCCCGGCTACCAGCAGCCCGGCTACCCGGCGCCCGGDesign primers
2237842CTGGTTGCCCGCCTGATTGCCTGCCTGGATGCCTGCDesign primers
2239433GGGCCAGGTCCAGGGCCAGGCCCADesign primers
2281454ACGGGAGGTACTGGAGGTACCGGAGGTDesign primers
2350804GATTGGGTGATCGGGTGATCGGGTDesign primers
2379882CGTTGTCGTCGTCGATGTCGATGTDesign primers
2405303CCGCCGTTG-CCGCCGTTG-CCGCCGTCGDesign primers
2408531GGCTGCTTCAGGACC-GGCTGCTTCAGGACC-GGCTGGTCCAGAACCDesign primers
2410693CCGGCGGCGGCGGCGGCGACGGCGDesign primers
2410754TCATCGGCGTCCTCGGCGGCATCGGCGDesign primers
2411369GCTGCCGGTGCCGCTGCCTCTGCCDesign primers
2500893GGAAAAACAGCCGGGCGCCGAAAATCAGCAGGGCGCCGAAAAACAGCAGGGCGGDesign primers
2582514GAAGCAGTAACACCGCCAAGCAGTAACACCGCGAAGCAGTATCGTCGCDesign primers
2616077GGCTTCATTGTCCCGGGCTTGATTTTCCTGGGCGGCATCGTCCCGGACTTCATTGTTCCGDesign primers
2688062GCAGCTGCGGCAGCCGCGGCTGCGGCAGCTGCTGCAGCCGCAGCCDesign primers
2728437TGCCCGAGGGAACCATGCCCGAGGAAACGATGCCCAAGGAGACCADesign primers
2776112GGTGGTGGGCCTGGTTCTGGTGGCCCTGGTTCTGGTGGGCCTGGTTCTGGTGGGCCTGGTTCTGGTGGGCCTGGCDesign primers
2778709GGTGGTGACTTCGGCGGCGGCGATTTCGGCGGTGGTGACTTCGGCDesign primers
2825427AGGAACGGCAACGGGAAGGGCGGCAACGGGCGCAACGGCAACGGCDesign primers
2983548GCCGTCACGGCCGCCACGGCCGCCACGDesign primers
3166342GGGGCGGCGGCGTGGGCGGGAGCGDesign primers
3174062GCGCAGCGCCGCACAACGCAGCGCCGCACADesign primers
3175905ACCACCAGCACCACAACCGCCACCDesign primers
3177525TGGTCCGGATGATCCAGCTCCGGCTGATCCAGGTCCGGATGATCCDesign primers
3196929GCAGCAGCACCAGCAGGAGCAGCGDesign primers
3200013CGGACGCGGGGCCAATGAACTCGGGGCCAACGGACACCGGGGCAADesign primers
3238772ATGGCCATGCCCACGGCCATGCCCDesign primers
3270812GGCCAGGACCAGGGACAGGACCAGDesign primers
3298839GCCCACTCCCACGCCTACGCCCACGCCCACDesign primers
3302083CCAGCACCACCACCAGGATCAGCADesign primers
3337309GGGCGCCCTGGACGCCCTGGCCGCCCTDesign primers
3346475TGCTGGCGCTGGCGCTGGTGGTGGDesign primers
3405204ATGGAGTTGTCCGTGGAGTTATCCGTGGAGTTGTCCDesign primers
3408146CCGGCTCCACCGGCGCAGGCTCCACCGGCGCGGGCTCCACGGGTGDesign primers
3408506CCGCAGCCTTCTCCCCCGCCGCTTTCTCCCCGGCGGCCTTCCCCCDesign primers
3514484GGCCCT-GGCCCT-GGGCCT-GGCACTDesign primers
3526925CAACGG-CAACGG-AAACGG-CAACGGDesign primers
3645341CTTGAACCAGGCACAGGCTGAACCAGGAACAGCTTGAACCAGGAACATDesign primers
3679047TCGGGCACTGCCCGGTCACTGCCCGGTCACTGCDesign primers
3703236GG-GG-AG-GG-GG-AG-GG-AG-AG-GG-GG-CGDesign primers
3778981GCGCCG-CCGCCG-GGGCCG-GGGCCG-GGGCCGDesign primers
3790442CGG-CGG-TGG-CGG-AGG-CGG-AGG-CGGDesign primers
3818935CCGCCGACGCCGCCGACGCCGCGGDesign primers
3830758CCACCGCCACGGCCACGGCCACCADesign primers
3949971CGCCAGCACCAGCGCCAGCACCAGDesign primers
3951123TGGAGGGACCCGCCGTGGAGGGACCCGCCTTGGAAGGATCCGTCGDesign primers
4045524CCGCTCCCCTGACTTTGCGGCTCCGCTCACTTTGCCGCTCCGTTCACTTTGDesign primers
4052765GACAGCCGGACAGCAGGACAGCCTDesign primers
4055815ACGCCA-CCGCCA-CCGCCA-TCGCCADesign primers
4081465GCACCT-GCGCCT-GCGCCT-GCGCCTDesign primers
4163190CGCTGCCGGCAACGGCGGCGGCGGCGGCGGAAACGGCGGCGGCGGCGGCGGAAACGGCGGCGGDesign primers
4163298TGGCGGCGGCAACGGCGGCGGCGGCGGCAACAACGGCGGCGGCAACAACGGCGGDesign primers
4163353GGCAACGGCGGCGGCGGCAACGGCGGCGGCGGCGGCAACAACGGCGGCGGCGGCGGCAACAACDesign primers
4163499TGGCGGCGGCAACGGCGGCGGCGGCGGCAACAACGGCGGCGGCAACAACGGCGGDesign primers
4163562CGG-CGG-CGG-CAA-CGG-CGG-CGG-CGG-CGG-CAA-CAA-CGG-CGG-CGG-CGG-CGG-CAA-CGG-CGG-CGG-CGGDesign primers
4163639GCGGCGGCGGCAACGGCGGCGGCGDesign primers
4163665AATGACGGCGGCAACGGCGGCGGCAACGGCGGCGGCDesign primers
4163802AAACGACGGCGG-CAACGGCGGCGG-CAACGGCGGCGG-CAACGGCGGCGGDesign primers
4163865CGGCGGCAACGGCGGAGGCGGAAACGACGGCGGCAACAACGACGGDesign primers
4163979AACAGGCGGAACCGGCGGAACCGGCGGDesign primers

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