Microsatellites /Tandem Repeats database

Genome: Weeksella virosa DSM 16922

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
83608CATGATG-GGTAATG-GTTAATG-GTTAATG-GTTAATG-GTTAATG-GTTAATG-GATAATG-GTTAATG-GGTAATG-GTTAATG-GTTAATG-GATAATG-GGTAATG-GGTAATGDesign primers
128558CATTTTTCATTTTACTTTTTTCATTTTADesign primers
137124TGAATTTCGATCTGAATTTTGAACTGAATTTCGATCDesign primers
211462CAAAT-AAAAT-CAATT-CAATT-GAAATDesign primers
251712TGTTTTTGATTTTGTTTTTGTTGTDesign primers
261617AATATTTATTAATTTTTTTTAAAATATATTDesign primers
265164AATTTTAGTTTTGATTTTCATTTTDesign primers
266845TCATTTTCATATTCATATTCAATTDesign primers
270066TTATTTATTTTGTTTATTTTATTTTTTDesign primers
273020AGAAATG-ATAAATG-ATAAATG-ATAAATGDesign primers
296826TATTTC-TGGTTC-TGGTTC-TGGTTC-TGGTTC-TGGTTCDesign primers
311503TATTTTTATTA-CTTTTTTATTA-CTTTTTTATTADesign primers
323486GTAGTTGTAGTGGTTGTTGTAGTTDesign primers
466876ATGGTTTATGATTTTTGGTTTATGGATTDesign primers
507860AA-AA-AT-AG-AA-AT-AA-AA-AT-AA-AA-AADesign primers
568949AATAACTAAATTACTAAACAACTADesign primers
629947GTTCAACCACTCAACC-ATTCAACCACTCAACC-ACTCAACCATTCAACC-ATTCAACCATTCAATC-ACTCAACCACTCAACCDesign primers
630037TCAATCACTCAACCACTCAACCACDesign primers
643240TCTTTTTTTCTTTTGTTCTTTTTTDesign primers
660441AT-TT-TT-AT-GT-TT-TT-TT-TT-AT-TT-TTDesign primers
676036TTT-TTT-TTT-CTT-CTT-TTT-CTT-CTT-TDesign primers
714147ATATTTTACCACAATTTACCATTTTTTACCDesign primers
903673GCAAAAGCAACAGCAAAAACAAAADesign primers
993600CTTATTATA-TTTATTATA-TTTATTATADesign primers
997310TAGGGAT-TGGGGAT-TGGGGAT-TGGGGATDesign primers
1138871ATAACCATACCCATATCCATAACCDesign primers
1160725TGTTTTGATTTCTTTTCTTTTGGTTDesign primers
1187159ATAATTTTTTTTATTTTTTTGTAACTTTTTDesign primers
1196106AATAACATAAAATATAAAAAAATGADesign primers
1344866CGATAAAACGATAAATCGAAAAAADesign primers
1368747AATAAAACTAAAATAGAACAAAAATGAAACAAADesign primers
1533262ACA-AAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GATDesign primers
1586343CGATAAAACGATAAATCGAAAAAADesign primers
1739524TAATTAAAAAAAATAAAAAATCATGAAAAADesign primers
1756937ATTTTGTTGTGTTTTCTGTTGTGTTTTCTGTTGTGTDesign primers
1908718TATATTTTTTATATTTTATATATTTATDesign primers
2062245CGATAAAACGATAAATCGAAAAAADesign primers
2089514TATAATTCTTTTATAAATGTTTCTTAATTCTTTDesign primers
2112123GAAGAAGAAGAGAAAGAAGAAAAADesign primers
2238680TACAAGCACAAGTAAAAGTGCAAGDesign primers
2267636AAAAAATTCTAAATACAATTCTAAATACAATTCTAADesign primers

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