Microsatellites /Tandem Repeats database

Genome: Acidobacterium sp. MP5ACTX9

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
178745GATGTTCACCCTTGTTTCAGATGTTGACCCTTGTTTCAGATGTTGACCCTTGTTTCADesign primers
472691AACGGC-AACGGC-AACGGC-AACGGC-AACGGCDesign primers
516386TCAGGGA-TCAGGGA-TCAGGGA-TCAGGGADesign primers
517753GAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGGDesign primers
523397GAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGGDesign primers
524358TAGGGAA-CAGGGAA-CAGGGAA-CAGGGAA-CAGGGAA-CAGGGAA-CAGGGAA-CAGGGAADesign primers
531473AA-AA-CA-AA-AA-CA-AA-AA-CA-AA-AA-CADesign primers
531601GCAACGGCAGCGGCAAAT-ACAACGGCAGCGGCAAAT-GCAACGGCAGCGGCAAAT-GCAACGGCAGCGGCAAAT-GCAACGGCAGCGGCAAAA-GCAACGGCAGCGGCAAATDesign primers
534906GAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGGDesign primers
534969CGGCAG-CGGCAG-CGGCAA-CGGCAG-CGGCAA-CGGCAGDesign primers
655362GGATCAGGGATCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGGGAGCAGDesign primers
737320GTTGCC-GTTGCC-GTCGCC-GTTGCC-GTTGCC-GTTGCCDesign primers
742564GCATTTGCCGTTGCCGCTTTTGCCGTTGCCGCTTTTGCCGTTGCCDesign primers
865242AATTTGTGGTGAGTTTGTGGTGATTTTGTGGTGDesign primers
922208GCTGTTGCTTTT-GCCGTTGCTTTT-GCCGTTGCTTTT-GCCGTTGCTTTT-GCCGTTGCTTTTDesign primers
923910AGCCGT-TGCCGT-TGCCGT-TGCCGT-TGCCGT-TGCCGTDesign primers
932918TTGCCGTCGCCGTTGCAGTTGCCGTCGCCGTCGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGDesign primers
998761TAAAAAAGCCGTCAATCTAAAAAAGCCGTCAATTGAAAAAAGCCGTCAATCDesign primers
1034005GAACAG-CAACAG-CAACAG-CAACAG-CAACAG-CAACAGDesign primers
1036796GAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGGDesign primers
1134572TTGCCG-TTGCAG-TTGCAG-TTGCAG-TTGCAG-TTGCAGDesign primers
1134613GTTGCCGTTGCTGTTGCTGTTGCTGTTGCCGTTGCCDesign primers
1265079AGCAAC-TGCAAC-TGCAAC-TGCAAC-TGCAAC-TGCAAC-TGCAAC-TGCAACDesign primers
1407063AACCGC-AACCGC-AACCGC-AACCGCDesign primers
1407186CGCAAC-CGCAAC-CGCAAC-CGCAACDesign primers
1443942GAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGGDesign primers
1833971GAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGGDesign primers
1974865GAACCG-CAACCG-CAACCG-CAACCG-CAACCG-CAACCGDesign primers
1974906GCAACCGCAACGGCAACCGCAACCGCGACCGCAACGGCAACCGCAACCDesign primers
1975150CCGCAACTGCAACTGCAACCGCAACTGCAACTGCAACGGCAACCGCAACCGCAACGGCAACCGCAACCGCAADesign primers
2010226TAGGGAC-CAGGGAC-CAGGGAC-CAGGGAC-CAGGGAC-CAGGGACDesign primers
2091339TGCAAG-TGCAAG-TGCAAG-TGCAAGDesign primers
2091454GGTTAACCGACTTTTGGAGGTTAAACGACTTTTGGAGGCTAACCGACTTTTGGADesign primers
2113194AACGGC-AACGGC-AACGGC-AACGGC-AACGGCDesign primers
2165288CAACTGCAACGGCAACAACAACTGCAACTGCAACAACAACTGCAACGGCAACAACAACTGCAGCGGCAACAADesign primers
2368468TTGCCG-TTGCCG-TTGCCG-TTGCCGDesign primers
2457549CTGCTGTTGCTA-TTGCTGTTGCTA-TTGCTGTTGCTADesign primers
2457632GTTGCC-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCTDesign primers
2467292CAACGGCAACAGCAACTT-CAACGGCAACAGCAACTT-CAACGGCAACGGCAACTTDesign primers
2612070CAACAG-CAACCG-CAACCG-CAACCG-CAACAG-CAACAG-CAACAG-CAACCG-CAACAG-CAACAGDesign primers
2671333GAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGG-CAACGGDesign primers
2792031AAATCACCACAAACTCACCACAAACTCACCACADesign primers
2933717TTGCCG-TTGCCG-TTGCCG-TTGCCG-TTGCCGDesign primers
2938878GGCCCTGAACCCTGAACCCTG-AGCCCTGAACCCTGAACCCTG-AACCCTGAACCCTGAACCCTGDesign primers
2939549TTGCCGTTGCGGTTGCGGTTGCGGTTGCCGTTGCGGDesign primers
2939596GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTTDesign primers
2940251GCCGTT-GCCGTT-GCCGTT-GCCGTTDesign primers
2940314ATTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCCDesign primers
3141988TGGCAACGGCGG-CGGCAACGGCGG-CGGCAACGGCGG-CGGCAACGGCGG-CGGCAACGGCGGDesign primers
3167996TGAGAAC-TGAGAAC-TGAGAAC-TGAGAACDesign primers
3233463CCCACACCACAACCGTCCCCTCACCACAACCGTCCCCTCACCACAACCGTCDesign primers
3405364GTCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTT-GCCCTTDesign primers
3747115CGTCATACATAAAAGGT-CGTCATACGTAAAAGGT-CGTCATACGTAAAAGGT-CGTCATACGTAAAAGGT-CGTCATACGTAAAAGGTDesign primers
3747268CTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGCCDesign primers
4059118TGCCGTGGCCGT-GGCCGTGGCCGT-TGCCGTTGCCGT-TGCCGTTGCCGT-TGCCGTTGCCGT-TGCCGTTGCCGT-TGCCGTTGCCGTDesign primers
4134280TTGCCGTCGCCG-TCGCCGTCGCCG-TTGCCGTTGCCG-TTGCCGTTGCCG-TTGCCGTTGCCGDesign primers

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