Microsatellites /Tandem Repeats database

Genome: Halogeometricum borinquense DSM 11551

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
31706CGATTCCGGAACTGACGCAGAAGA-CGATTCCGGAACTGACGCAGAAGA-CGATTCCGGAACTGACGCAGAAGA-CGATTCCGGAACTGACGCAGAAGADesign primers
57425CCATACAGG-CCATACAGG-CCATACAGGDesign primers
91547CTGCATCTG-CTGCATCTG-CTGCATCTGDesign primers
190753AATAAC-AATAAC-AATAAC-AATAAC-AATAAC-AATAAC-AATAAC-AATAAC-AATAACDesign primers
192755GTTCGATAACTGACTGCTGTTCGA-GTTCGATAACTGACTGCTGTTCGA-GTTCGATAACTGACTGCTGTTCGADesign primers
486347GCCGTACTCGTTGTTACT-GCCGTACTCGTTGTTACT-GCCGTACTCGTTGTTACT-GCCGTACTCGTTGTTACTDesign primers
491101GTCTCGACGGCTACTCGTGG-GTCTCGACGGCTACTCGTGG-GTCTCGACGGCTACTCGTGGDesign primers
597351CCACTCGTACCGCTCTCCTGCC-CCACTCGTACCGCTCTCCTGCC-CCACTCGTACCGCTCTCCTGCCDesign primers
625109CGGGACCGTGAGTTCTTG-CGGGACCGTGAGTTCTTG-CGGGACCGTGAGTTCTTGDesign primers
710480AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-ATDesign primers
728570GCTTTGGTCCTGACTCC-GCTTTGGTCCTGACTCC-GCTTTGGTCCTGACTCC-GCTTTGGTCCTGACTCCDesign primers
892667CCGTCTCCGCTTCGG-CCGTCTCCGCTTCGG-CCGTCTCCGCTTCGGDesign primers
1035524AGATG-AGATG-AGATG-AGATG-AGATGDesign primers
1060052CTGAATCCAAGTCGAGG-CTGAATCCAAGTCGAGG-CTGAATCCAAGTCGAGGDesign primers
1301279CAGAAC-CAGAAC-CAGAAC-CAGAAC-CAGAAC-CAGAACDesign primers
1385146TCTCTCCCGT-TCTCTCCCGT-TCTCTCCCGTDesign primers
1543355CTGTTC-CTGTTC-CTGTTC-CTGTTC-CTGTTCDesign primers
1983411TCATCCGTTCGAGCGCA-TCATCCGTTCGAGCGCA-TCATCCGTTCGAGCGCADesign primers
2616967GGCGGCATG-GGCGGCATG-GGCGGCATGDesign primers
2708882GCGGAAGCGGTGCGGAGGCAGAG-GCGGAAGCGGTGCGGAGGCAGAG-GCGGAAGCGGTGCGGAGGCAGAGDesign primers

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