Microsatellites /Tandem Repeats database

Genome: Burkholderia rhizoxinica HKI 454

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
141433CCGAAACGTCGAAACGCTGAAACGDesign primers
175715GCCGATAGTCGTATAGGTCTATAGTCATATAGGCTGATAGTCATATAGACCAATAGTCATATAGDesign primers
226934TG-GC-GC-TG-GC-CC-AG-GC-GC-TC-GC-GCDesign primers
232316CAAGCCACTGCGGTA-TGGGCCACTGCGGTA-TGGGCCACTGCGGTADesign primers
271222GGCGTTGGCGGTGGCGGTGGCGTADesign primers
334136CGACGACTGGCTCGATGACTGCCTCGATGACTGGCCDesign primers
340309AAGGTTGCCGCCAAGAAGGTCGCGGCGAAGAAGGTCGCGGCGAAGDesign primers
340420AAGGTCACGGCGAAGAAGGTCGCCGTGAAGAAGGTAGCCGCGAAGDesign primers
347418CCGGTTCAGTGCAGTGCAGTGCAGTGCAGTCCGGTGCGGTGCAGGDesign primers
378443AAGCC-TGAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGC-CAAGCDesign primers
378544AAGCC-AAGCT-AAGCT-AAGCT-AAGCT-AAGCT-AAGCT-AAGCT-AAGCT-AAGCCDesign primers
392192CAGCGTCAGCTTCAGCTTCAGCGGDesign primers
400741TGAAGGCGTGAAGGGGTGAAGGGGDesign primers
443633GGATCTGCGACGGGGGCCGGATCGGCGGCGGAGGCCGAATCTGCGACGGGGGCCDesign primers
443715CGGGGGTCGGATCGGCGGCGGAGGCTGGATCGGCGGCGGGGGCCGGATCTGCGADesign primers
443770GGAGGCCGGATCTACGGC-GGAGGCCGGATCTACGGC-GGAGGCCGGATCGACGACDesign primers
583055GGCCGT-GGCCGT-GTCCGT-GGCCGGDesign primers
608667ATCGGTGTAATACTCCGCCACTCATCGGCGCGATACCCCGCCACTCATCGGCGTGATACCCCGCCACTCATCGGCGCGATACCCCGCCACTCDesign primers
622565CCTGAGGC-CATGAGGC-CATGAGGC-CATGAGGCDesign primers
673474GCGCACGCGCAAGCGCTCGCGCAGDesign primers
691609GGCTGCGGCTGGGTCGGGGCTGTGGTTGGGTCAGGGCTGCGGCTGGGTCGGDesign primers
702587ACACCCACGGCGTGCTATCGAACCACCTACGGTGCGCTATCGAACCACTCACGGCGTGCTATCGGADesign primers
756711GCGTCGGGTGCGTCAGGTGCGTCAGGTGCGTCGGGCDesign primers
764555CGGGCGGTGGATCCGAGGCGAGCGCTGGATCCGAGTTGGGCAATGGATCCGAGGTGGATGGTGGATCCGAGGDesign primers
773580CGCGT-CGCGT-CGTGT-TGCGT-TGCGTDesign primers
824671GCCCTG-CTCGTG-CTCGTG-CTCGTG-CTCGTG-CTCGTG-CTCGTG-CTCGTG-CTCGTGDesign primers
845928TAGCGGTGAGGGCGACGGGCTGGCAGCGGTGAAGGCGATGGGCCGGCAGCGGTGAGAGCGACAGACTGGDesign primers
858034CTGATTGACGGATTGACTGATTGTDesign primers
915870GAAGCTGACGACGCTGACGAAGGTGACDesign primers
999235TTCCCTCTCCAGC-ATCTCTCTCCAGC-ATCTCTCTCCAGC-ATCTCTCTCCAGC-ATCTCTCTCCAGC-ATCTCTCTCCAGC-ATCTCTCTCCAGC-ATCTCTCTCCAGC-ATCTCTCTCCAGCDesign primers
1008690ACTGTCGCG-AACGACGCG-AACGACGCG-AACGACGCG-AACGACGCG-AACGACGCG-AACGACGCG-AACGACGCG-AACGACGCG-AACGACGCG-AACGACGCG-AACGACGCG-AACGACGCG-AACGACGCG-AACGACGCG-AACGACGCGDesign primers
1015886GCTGCTGGAGCTACTGGAGCTGCTGGADesign primers
1025565ATGCCTA-GTGCTCG-GTGCTCG-GTGCTCG-GTGCTCG-GTGCTCG-GTGCTCG-GTGCTCG-GTGCTCGDesign primers
1025629TGTCCGG-TGTCCGG-TGTCCGG-CGTCCGG-TGTCCGG-TGTCCGG-TGTCCGGDesign primers
1032859CCGCA-TCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGT-GCCGTDesign primers
1032985CCGTGCCATG-CCGTGCCATG-CCGTGCCATG-CCGTGCCGTG-CCGTGCCGTGDesign primers
1043797GGACCACA-CGACCACA-CGACCACADesign primers
1066919GCGGTGGCAGTGGAGGTGGCGATGDesign primers
1140687GACGCAC-TGAGCAC-TGAGCAC-TGAGCAC-TGGGCAC-TGAGCAC-TGGGCAC-TGGGCAC-TGAGCACDesign primers
1158660CCTTTTTCGCAGGGGCTTTCTTTGCAGGGGCCTTTTTGGCAGGGGCCTTTGTCGCAGCAGDesign primers
1166348TTGCTCCGGCGTATAGG-TTGCTCCGGCGTATAGG-TTGCTTCGGTGCATAGGDesign primers
1166415CCTGTTCCGGCGTATGAACTGCTCTGGCGTATGAACTGCTCCGGCGTATGGCCTGTTCCGGCGTATGATCTGCTCCGGCGTATGATCTGCTCCGGCGTATGADesign primers
1168845GCGGCGTCGTGGCGTCGCGGCGACDesign primers
1172276TTCGACCTGTGACAAGGTTTGATCTGTGACAAGGTCCGGCATGTGACAAGGDesign primers
1212942ACGTTC-ACGTTC-ATGTTC-GCGTTCDesign primers
1277510CGCTATAG-CACCACAG-CACCACAG-CACTACAG-CACTACAG-CACTACAG-CACTACAG-CACTACAG-CACTACAGDesign primers
1299670ATTTAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCATDesign primers
1299767GGCATC-GGCATC-GGCATC-GACATC-GACATCDesign primers
1299802CGACATCGACACAGACATCGACACDesign primers
1301350GTCAGCAGA-ACCAACAGA-ACCAACAGA-ACCAACAGA-ACCAACAGA-ACCAACAGADesign primers
1301405CCAACAGAATCAACAGAACCAACAGAADesign primers
1301433CAGCAGAAT-CAGCAGAAT-CAGCAGAAT-CAGCAGAATDesign primers
1322124GCAGGCCCAGGCGCAGGCGCAAGCGCAAGCDesign primers
1336606CGTACGGGGCTGC-GATACGGGGCTGC-GATACGGGGCTGCDesign primers
1358365GCCCTTCTTCACGGCCTTTTTCACGACCTTCTTCGCDesign primers
1601449TGGGTGCAATGGCTGCGACGGGTGCGATGGCTGCCACGGGTGCGATGGCTGCGADesign primers
1601527TGACGTCGGTAACGTCGGTGACGTCAGDesign primers
1673138TCCTGGCCGCTTATCGCCGGATCCGGACCGCTTAGCGTCGGATCCTGGCTGTTTATCGCCGGADesign primers
1689666ATCATTACCTGGCCAGTCGGAACC-GGGATTACCTGGCCAGTCGGAACC-GGGATTACCTGGCCAGCCGGAACCDesign primers
1689739GGATGACCTGGCCAATCGGAACCCTGATTACCTGGCCAACCGGAACCGTGATTACCTGGCCAGTCGGAGCCCDesign primers
1705850TCTGTTGCGTTCTTTTGTTCTGTTGCGTCTTTTGGTTCTGTTGCGTTCTTTGCCDesign primers
1765043GCGCGAG-GCTTGAG-GCTTGAG-GCTTGAG-GCTTGAG-GCTTGAGDesign primers
1773780TCTACCTG-TCTACCTG-TCTGCCTGDesign primers
1787624CCGCGCCGGCGCCCACGCCTGCGCDesign primers
1820723GCCTACTGGAGGCGGGCTTACTGGAGACAGGCCTACCGGAGACGAGCCTACTGGAGACAADesign primers
1826981GCGCGCGCTCGCGCGCGAACGCGCDesign primers
1854749TCAGCGCTTAAGCGCTTGAGCGCTDesign primers
1874305GGGCCCGGCT-CATCTCGGCT-CATCTCGGCT-CATCTCGGCT-CATCTCGGCT-CATCTCGGCTDesign primers
1874368CTCGGCTCAGCCCGACTCAGCTCCGCTCATDesign primers
1877601CCCCACATCACCGCCGGATCCTCACATCACCGTTGGATCCTGACATCACCGCCGGACDesign primers
1887088CCCGATCCGATTCGATCCGATCCGATCCAADesign primers
1898294GACGCAGACTGGAGGCACCGGCGACGCAGATCGGGGACACCGGCGACGCAGACTGGAGGCACGGGCDesign primers
1904902CATGCTCGTGCTGGATGCTGGTGCTGAATGCTGGTGCTGDesign primers
1913685GGCGCT-GAGCCT-GAGCCT-GAGCCT-GAGCCT-GAGCCT-GAGCCT-GAGCCT-GAGCCTDesign primers
2063525CGCGTGC-CGTATGC-CGTATGC-CGTATGC-CGCATGC-CGCATGC-CGCATGC-CGCATGC-CGTGTGC-CGTGTGC-CGTGTGC-CGTGTGC-CGTGTGC-CGTGTGC-CGTGTGC-CGTGTGC-CGTGTGC-CGTGTGC-CGTGTGC-CGTGTGC-CGTGTGC-CGCATGCDesign primers
2088382TGGCCGTCTTGCCGTCTGGCAGTCDesign primers
2106636CGGCGTCGCGGGCCGCGACGCGGGCGGTGTCGCGGGDesign primers
2157616ATGCCCACACCTGGGCCGATGTCCACGCCCGGGCCGATGCCCACGCCCGAGCCGDesign primers
2202122CAGCGGCAC-TAGTAGCAC-TAGTAGCAC-TAGTAGCAC-TAGTAGCAC-TAGTAGCAC-TAGTAGCAC-TAGTAGCACDesign primers
2240650CCGTTGGCCCGCCAGCCGTTGATCTGCCAGCCGTTGATCCACCAGDesign primers
2321698CGTCG-CCTCG-CGCCG-CGCCG-CGTCGDesign primers
2324928GTCACCGGCTCACCGGGGCACCGGDesign primers
2491003GCCACCGCCGCCACCGCTGCCACCACCDesign primers
2579835TATT-CGGT-CGGT-TGGT-TGGT-CGGT-CGGT-CGGT-TGGT-CGGT-TGGT-TGGTDesign primers
2579896TCGGTTT-TAGGTTT-TAGGTTT-TAGGTTTDesign primers
2579946CGGC-AGGC-AGGC-AGGC-AGGC-AGGCDesign primers
2580536TCGCCGGGTCGCTATGCCTCGCCAAGTCGCTATGCCTCGCCAAGTCGCTGTGCCTCGCCAAGTCGCTGTGCCTCGCCAAGTCGCTGTGCCTCGCCAAGTCGCTGTGCCTCGCCAAGTCGCTGTGCCDesign primers
2621782TCGTGATGTTCG-CTGTGATGTTCG-CTGTGATGTTCGDesign primers
2634761CTCGGC-ATCGGC-ATCGGC-ATCGGCDesign primers
2641878GGACA-CGACA-CGACA-CGACA-CGACADesign primers
2641904AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCAC-AGCACDesign primers
2676809CCCACTG-GTGCCTG-GTGCCTG-GTGCCTG-GTGCCTG-GTGCCTG-GTGCCTG-GTGCCTG-GTGCCTGDesign primers
2690274CTGTCACGCTACGTGCTGTAACGCCACGTGCTGTCACGCAACTCGDesign primers

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