Microsatellites /Tandem Repeats database

Genome: Burkholderia rhizoxinica HKI 454

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
232319GCCACTGCGGTATGG-GCCACTGCGGTATGG-GCCACTGCGGTATGGDesign primers
378450AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCA-AGCCADesign primers
378551GCTAA-GCTAA-GCTAA-GCTAA-GCTAA-GCTAA-GCTAA-GCTAADesign primers
622567TGAGGCCA-TGAGGCCA-TGAGGCCADesign primers
824675TGCTCG-TGCTCG-TGCTCG-TGCTCG-TGCTCG-TGCTCG-TGCTCG-TGCTCG-TGCTCGDesign primers
999239CTCTCCAGCATCT-CTCTCCAGCATCT-CTCTCCAGCATCT-CTCTCCAGCATCT-CTCTCCAGCATCT-CTCTCCAGCATCT-CTCTCCAGCATCT-CTCTCCAGCATCT-CTCTCCAGCATCTDesign primers
1008695CGCGAACGA-CGCGAACGA-CGCGAACGA-CGCGAACGA-CGCGAACGA-CGCGAACGA-CGCGAACGA-CGCGAACGA-CGCGAACGA-CGCGAACGA-CGCGAACGA-CGCGAACGA-CGCGAACGA-CGCGAACGA-CGCGAACGADesign primers
1025572GTGCTCG-GTGCTCG-GTGCTCG-GTGCTCG-GTGCTCG-GTGCTCG-GTGCTCG-GTGCTCGDesign primers
1025651GTCCGGT-GTCCGGT-GTCCGGT-GTCCGGTDesign primers
1032865CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTG-CCGTGDesign primers
1032991CATGCCGTGC-CATGCCGTGC-CATGCCGTGCDesign primers
1043798GACCACAC-GACCACAC-GACCACACDesign primers
1277530ACAGCACT-ACAGCACT-ACAGCACT-ACAGCACT-ACAGCACT-ACAGCACT-ACAGCACT-ACAGCACTDesign primers
1299674ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGCDesign primers
1301355CAGAACCAA-CAGAACCAA-CAGAACCAA-CAGAACCAA-CAGAACCAA-CAGAACCAADesign primers
1301427CAGAATCAG-CAGAATCAG-CAGAATCAG-CAGAATCAG-CAGAATCAGDesign primers
1765047GAGGCTT-GAGGCTT-GAGGCTT-GAGGCTT-GAGGCTTDesign primers
1874310CGGCTCATCT-CGGCTCATCT-CGGCTCATCT-CGGCTCATCT-CGGCTCATCT-CGGCTCATCTDesign primers
1913689CTGAGC-CTGAGC-CTGAGC-CTGAGC-CTGAGC-CTGAGC-CTGAGC-CTGAGCDesign primers
2063551GCCGCAT-GCCGCAT-GCCGCAT-GCCGCATDesign primers
2063580CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTGDesign primers
2202127GCACTAGTA-GCACTAGTA-GCACTAGTA-GCACTAGTA-GCACTAGTA-GCACTAGTA-GCACTAGTADesign primers
2579898GGTTTTA-GGTTTTA-GGTTTTA-GGTTTTADesign primers
2579947GGCA-GGCA-GGCA-GGCA-GGCA-GGCADesign primers
2580568TGCCTCGCCAAGTCGCTG-TGCCTCGCCAAGTCGCTG-TGCCTCGCCAAGTCGCTG-TGCCTCGCCAAGTCGCTG-TGCCTCGCCAAGTCGCTGDesign primers
2621784GTGATGTTCGCT-GTGATGTTCGCT-GTGATGTTCGCTDesign primers
2634762TCGGCA-TCGGCA-TCGGCA-TCGGCADesign primers
2641879GACAC-GACAC-GACAC-GACAC-GACACDesign primers
2641905GCACA-GCACA-GCACA-GCACA-GCACA-GCACA-GCACA-GCACA-GCACA-GCACA-GCACA-GCACA-GCACADesign primers
2676813CTGGTGC-CTGGTGC-CTGGTGC-CTGGTGC-CTGGTGC-CTGGTGC-CTGGTGC-CTGGTGC-CTGGTGC-CTGGTGC-CTGGTGCDesign primers

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