Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Achromobacter xylosoxidans A8

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
126460	CCAGGCACAGGCCCACGCCCAGCC	Design primers
271816	AGGCCG-ATGCCG-ATGCCG-CGGCCG	Design primers
411645	CCAGCACCACCAGCAGCACCAGCG	Design primers
471331	GCGACGCGCACCGCCGCGCAGCGAGGCTCA	Design primers
493684	GCCTGGCCGTGGGCCTGGGCGCGGGGCTGGCAGTGG	Design primers
495531	GCCGATGCCGCCGAAGCCGACGATGCC	Design primers
505592	CGGCCGCGCCTGAGCTGATCGCGCCTGAGCCGGCTGCGCCTATGC	Design primers
554422	GGCGGGCGCCGGCGCGCGTCCGCGCGCGCC	Design primers
621875	GGC-TGC-TGC-TGC-TGC-TGC-TGC-TGC	Design primers
627054	CGAGGCCGAAGCCGAGGCCCAGGC	Design primers
642650	GACGGCGATGGCGTCGGCGCCGGC	Design primers
654064	CCTGGCCCTGGGCCAGGCCCGGGC	Design primers
678748	CGGGCTTCTTCGGAGCGGCTTTCTTCGCAGCGGGCTTCTTGGCGG	Design primers
678850	GCGCCTTCTTGGCGACGGCCTTCTTGGCAACCGCCTTCTTGGCAG	Design primers
678898	GCGCCTTCTTGGCGACGGCCTTCTTGGCTACCGCTTTCTTGGCGACGGCCTTCTTGGCGA	Design primers
678959	GACTTTCTTGGCTACGGCTTTCTTGGCGACGGCCTTCTTGGCAAC	Design primers
679005	GCCTTCTTGGCGACGGCTTTCTTGGCCACGGCCTTCTTGGCGACAACCTTCTTGGCTACCGCTTTCTTGGCCACGGCCTTCTTGGCGACGGCCTTCTTGGCTACCGCTTTCTTGGCTACCGCTTTCTTGGCGGCG	Design primers
679244	TGCGGCCTTCTTCGCTACTGCCTTCTTGGCGGCGGGCTTCTTCAC	Design primers
738250	ACATTG-CCCCTG-CCCCTG-CCCCTG-CCCCTG-CCCCTG-CCCCTG-CCCCTG-CCCCTG	Design primers
793088	GGAGGAGGAGGCGGCGGAGGAGGC	Design primers
793130	GGCTCCGGCTTGGGTTCCGGTTTGGGCTGCGGCTTC	Design primers
801778	AACAAG-AACAAG-GACAAG-AGCAAG	Design primers
902693	GATGGCCAGGATCGCCAGGCTGGCCAG	Design primers
928709	CGGCGCCGCAGGCGGCCCCGCAGCCGCAGCCGCAGG	Design primers
929134	GCCCCGGCGCCGGCCCAGGCGCCG	Design primers
970553	CCTTGGGGTCAAAA-CCTCCGGGTCAAAA-CCTCCGGGTCAAAA-CCTCCGGGTCAAAA-CCTCCGGGTCAAAA-CCTCCGGGTCAAAA-CCTCCGGGTCAAAA	Design primers
973602	GGGCGGTGGCGGGAGCGGGCGCGG	Design primers
1047564	TCGTCCTCGTCATCCTCCGCGTCC	Design primers
1057081	CTTCCTGGCGTTTTTCCTGGCCTTCTCCCTGGCGCT	Design primers
1064055	GCGAGCGCGCGCGCGATCGCGAGG	Design primers
1095598	GCGTGAAGG-TCGTGAAGG-TCGTGAAGG	Design primers
1125577	AATGGTTCGTCTTCGACGGGCAACGGCTCTTCGTCGACGGGCGACGGTTCGTCTTCGACGGGT	Design primers
1125652	TCGACGGGCAACGGTTCGTCCTCGGCGGGCAATGGCTCGACCTCGACCGGCAACGGCTCGTCC	Design primers
1133197	GCCCGCGCCCGAGCCGGCTCCCGC	Design primers
1191031	GATGACCGGGATGACGGGCATGACGGGCATGACGGGCATGACCGGGATGACCGG	Design primers
1240806	TCTACCGCTACTTCTACTGCTACATCGACCGCTGCT	Design primers
1264273	ACCAGCGCCAGCGCCAGCACCAGG	Design primers
1308664	CCAGCA-CCAGCA-CCGGCA-ACAGCA	Design primers
1333990	CCGGCCGCTCCGGCCACTCCGGCCACTCCGGCCGCA	Design primers
1491491	GGTGCTGGTAGCGGTGCTGTTCGCCGCGCTGGTAGC	Design primers
1518281	GTGGCGCTGGCGGTGGCGCTGGCG	Design primers
1571277	GGCATGGGCCTGGGCCTGGGCATC	Design primers
1590036	GCGCTGGCCCTGGCGCTGGCCCTG	Design primers
1627990	CGGCGGCTGCGGCGGCGGCGGCGC	Design primers
1667045	CAACCGCAACCCCAACGGCAACGG	Design primers
1778403	CCTGGCGCTGGCCGTGGCCTTGGC	Design primers
1800810	GATCAG-GATCAG-GAGCAG-GATCAA	Design primers
1903824	CCGCGACGCGCCGGGCCGCCCGGCG	Design primers
1906056	GGCGGCAAGCCGGGTGGCAAGCAGGGCGGCAGGCCC	Design primers
2045656	AAGCGTAGACGGAACAGAAACGTAGGCGGAACAGAAACGTAGGCGGAGCAG	Design primers
2064516	TCTGGATCAGGA-TCGGGATCAGGA-TCGGGATCGGGA-TCGGGA	Design primers
2080396	AGCCCGAGCCGGAGCCTGAACCCG	Design primers
2096567	GCCCTGGCCCAGGCGCTGGCGCTG	Design primers
2166691	GACGCCGGCGACGCCGGGGGCGCCGGC	Design primers
2253439	TGGCGA-TGGCGA-CGGCGA-TGGCGA	Design primers
2281432	GCGGCGTCGGCGCCGGCGGGGGCG	Design primers
2347027	CCAGCACCAGCCCCAGGACCCGCA	Design primers
2380599	CAGGTGCGGCAGGCGCTTCGGGTGCGGCAGGCGCTTCGGGTGCGGCAGGGACTTCGGGTGCGGCAGGGACTTCGGGTGCGGCAGGGACTTCGGGTGCGGCAGGGACTTCGGGCCCGGCAGGCGCTTCGGGTGCAGCAGGCGCTTCGGGTGCAGCAGGCGCTTCGGGTGCGGCAGGCACTC	Design primers
2380797	CGGGCGCGGCAGGCGCTT-CGGGTGCAGCAGGCGCTT-CGGGAGCGGCAGGGACTT-CGGGCCCGGCAGGCGCTT-CGGGCCCGGCAGGCGCTT-CGGGCCCGGCAGGCGCTT-CGGGTGCAGCAGGCGCTT	Design primers
2380924	GGGTGCAGCAGGCACTCCGGGTGCGGCAGGCACTCCGGGCGCGGCAGGCACTCC	Design primers
2486172	AGCCCGGCGGGGAGTCAGGCCCGGCCAGGAGTCAGGCTCGGCCGGGAGTCAGGCTCGGCCGGGAGTCA	Design primers
2536075	CCAGCGCCACCGCCAGCACCAGCG	Design primers
2547264	CAGGGCGAGGGCCAGCGCCAGCGC	Design primers
2581018	GGCTTGCTGGGCATGCTGGGCGTGCTG	Design primers
2598649	AATCTGGGCGACACCGTGACGAGCATGGGCGATACCGTGACGAACCTCGGCGACACGGTGACG	Design primers
2599495	GTGACCAACTTGGGCGACACCGTGACGAGCATGGGCGATACCGTGACGAACCTCGGCGACACGGTGACGAACATGGGAGGCACC	Design primers
2604332	GGAAGC-GGAAGC-CGAAGC-CGAAGC	Design primers
2621682	GCGGCGCCGGCGCCGGCGGCCGCG	Design primers
2651387	CTGCAGTTGCAGCTGCCGCTGCAG	Design primers
2869921	CGGCCTGCTTGTAGGTCTGCTTGTCGGCCTGTTTGC	Design primers
2921983	CCCCGAGCCCGACTCCGAACCCGA	Design primers
2969815	CGGGTTGGCCCGGTTGGCCGGGTTGGC	Design primers
3072676	CGC-TGC-TGC-TGC-TGC-TGC-TGC-TGC	Design primers
3106344	CATGCCGTCCTTGGACATGCCGCCTTTCGACATGCCGTCCTTGGACATGGAATCCTTGGACATGCCATCTTTCGACATACCGTCCTTGGACATCCCGTCTTTCGACATGCCTTCCTTGGACATGGAGCCCTTGGACATGCCGTCTTTCGACATGCCGTCCTTGGA	Design primers
3106515	ATCCTTGGACATGCCGCCCTTCGACATGCCGTCCTTGGACATGGAATCCTTGGACATCGA	Design primers
3110945	CTCGGCGTA-TTCGGCGTA-TTCGGCGTA	Design primers
3118251	GCTTCGGAAGCTTTGGAAGCTTCAGAA	Design primers
3127696	GCGGACGCCTGAGGCGGGCGCCTGAGGCGAAGGCCTGAG	Design primers
3159655	CGAGCCTCAGCCGGCCATGCCGCAGCCGGCCGCGCCAAAGCCGGC	Design primers
3159738	AGGCCGCCGCGCCTCAGCCGGCCACGCCTCAGCCGGCCGCACCTCAGCCGGCCGCACCTC	Design primers
3196185	GTTGGATGTTGGTTATTGGATATTGGAT	Design primers
3217880	CCGGCGGCGGCGGCGGAGGCGGTGGCGGCGGCGGTGGCGGCGGAG	Design primers
3217926	AGG-CGG-AGG-AGG-AGG-CGG-AGG-AGG	Design primers
3217954	GGAGGCGGGGGAGGCGGAGGTGGTGGAGGTGGTGGAGGGGGCGGC	Design primers
3233470	TCGCTGTCGCCGTCGCCGTTGCTG	Design primers
3293331	GTGCTGGCGGCGCTGGCGGTGCTGGCC	Design primers
3334663	CTGCCG-CTGCCG-CTGGCG-CTGCCC	Design primers
3374618	CGGTGGGCGCGCTGGGCGCGGTGGCCG	Design primers
3394653	GCCGCCGTCGCCGCCGGCGCCGCCGCTGCC	Design primers
3396299	CGC-TGC-CGC-CGG-TGC-CGC-CGC-CGC-CGC	Design primers
3396662	CGCCGCCGCTGCCGCCGCCCCCGC	Design primers
3397142	CGC-TGC-CGG-TGC-CGC-CGC-CGC-CGC	Design primers
3427537	TAGCTGCGGGTGGCTAGCTGCGGGCGGCGAGCTGCGGGCGGC	Design primers
3474232	GGTTTGTGGCGCACAGCTTCTGTGGCGCACAGCTTTTGTGGCGCACGG	Design primers
3557008	GCCACCCGCGCCACCCGTGCCACGCGC	Design primers
3597191	GGCGCTGGCGCGCGCGCTGGCGCC	Design primers
3642772	GCGGCCACGGCCGCCGCCGCGACC	Design primers
3654070	TGGCGCTGGTGCTGGCCCTGGTGC	Design primers
3732385	CTGGGCATCCTCGGCATCCTGGCCATC	Design primers
3804162	CAGCACCTGCACCAGCAGCGGCAC	Design primers
3850860	CGCCAGCGCCGGCGCCACCACCAG	Design primers
3853125	GGGCGGCGGATATCACGGTGGCGGATACCACGGCGGTGGATATCA	Design primers
3856906	GCGGCCTTGCTGGCGGTCTTGCTGGCAGCCTTGCGG	Design primers
3892561	CACCTG-CACCTG-CACCCG-CCCCTG	Design primers
3893721	CTGGCTGCGGGCGGCCAGCTGCGGGCGGCGAGCTGCGGGCGG	Design primers
4049310	TTCCTCTTTGCCTCTTTGCCTCTT	Design primers
4079087	GCGGCGGCGCTGCGGCGCGGCGAC	Design primers
4116806	GCCAGCGCGCGCCATAGCGCGCCACCGCGC	Design primers
4140597	GGCCAGGGCCTGGGACAGGGCCAG	Design primers
4162695	CACGGCCACCGCAACGGCTACGGC	Design primers
4259665	TGGCCA-TGTCCA-TGTCCA-TGGCCA	Design primers
4306422	GCCCCGCCGCCCCGCTGCACCGCC	Design primers
4378599	CT-CC-CC-CG-CC-CC-CT-CC-CG-CG-CC-CC	Design primers
4393122	CGCCG-CGCGG-CGCCG-CGCCG-CGGCG	Design primers
4440375	CCCGGC-CCCGGC-CCGGGC-CCCGTC	Design primers
4501227	GTC-GCC-GCC-GGC-GCC-GCC-GAC-GCC-GCC	Design primers
4526720	CCAGCGCCAGCATCAGCGCCACCG	Design primers
4542123	CAGCACCAGCAGCAGTACCAACAC	Design primers
4577067	ATCCGAATCCTGGCCGGCCGAATCCCGGCCGGCCGAATCCCGGCC	Design primers
4579387	GCCGCCGCAACCCGCCGCATGGCGCGGCAA	Design primers
4596661	GACGCAGGCGCAGCGCTCGCAGGCGTAGCGGACGCGGGCGCGGCC	Design primers
4640308	GTGCTGCTGCTGGCGCTGGTGATG	Design primers
4662270	GCCCGGCCCTGCCGGGCACGGCCCG	Design primers
4662651	CCGCGCCCGCCCCCGGGCGCGCGC	Design primers
4703934	CAGGAT-CACGAT-CACGAT-CAGGAT	Design primers
4771482	CAACCCTGGCGGCGGGACCAATCCCGGCGGCGGTACCAACCCCGGCGGCGGTAC	Design primers
4771537	AACCCCGGTGGTGGAACCAACCCTGGTGGCGGCACCAATCCCGGTGGCGGGACC	Design primers
4772961	CGGCGGCCTGCTGGGCGGACTGCTCGGCGGCCTGGC	Design primers
4791537	AAATGTCGGCCACCGCAACACGGCGGCCACCGCAAAACGGCGGCCGCCGCA	Design primers
4825087	CGGCGGCAACGGCGGCGACGCCGGCAA	Design primers
4879042	GCCCTGGCGCTGGCGCTGGGCCTG	Design primers
4888784	CCTGCGCCAGCGCCTGCTCCAGCG	Design primers
4917377	CTTTGGCGCGGCCGGCTTTGGCGCGGCTGGATTTGGTTCGGCCGG	Design primers
4957821	CTGGTTC-CTGGTTC-TTGGTTC-CTGGTTC	Design primers
4985162	CAGCGCCATCGCCACCGCCATCGC	Design primers
4996155	ACATCAACTTCAACAGCAACACCA	Design primers
5075837	AGTGCCCGGATTGGTCGGGGTGGTGCCTGGATCGGTCGGGGTCGTACCCGGATCCGTCGGGGT	Design primers
5217773	CCACCGCCAGCGCCACGGCCAGCG	Design primers
5275934	ACCGCCACCGCGCCCGCCACCACC	Design primers
5280840	CGCCCATGCCCACGCCGACGCCGA	Design primers
5366712	CC-GC-GC-CG-GC-GC-CA-GC-GC-CC-AC-GC	Design primers
5403335	GCGGCCGCGGGCGCGGCCGCCGCC	Design primers
5510630	CCCCGGCCACCCCCGCCACCGCGGCCA	Design primers
5511933	GCGGCCAGCAGGGCGGCCAGCGTGGCGGCCATGAGG	Design primers
5540302	CCGCGGCCACGGCCGCGACCGTGG	Design primers
5547739	CAGGTCCAGCTCCAGGCCCAGTTC	Design primers
5553170	GGCCGGCGTGGCTGGCGTGGCTGGCGT	Design primers
5582298	GCGCTGGTGGCGCGGGTGGCGCTGCTG	Design primers
5639715	CGGCGGCGGCGCGGGCGGCGGCGT	Design primers
5656806	GC-GC-CC-GC-GC-CC-GC-TC-CC-GC-GC-TC	Design primers
5676623	ACCGCAGGAGCGCCTGCCGCAGGGTCGCCTGCCGCAGGATCGCCT	Design primers
5679373	TGGTGCCGGTGCTGATGCTGATGC	Design primers
5746747	CCGACCCCAACCCCGAGCCCGACC	Design primers
5755523	GCCCTGCTGGGCCTGCTGGCGCTGCTG	Design primers
5755616	GCCAACGCCATCGGCAACGCCTAC	Design primers
5831862	CCGCCCTGGCCGCCCTGCCCGCCATGG	Design primers
5832171	CCGCCGCTGCCGCCGCCTCCGCCT	Design primers
5832360	CCGCCGCTGCCGCCACCGCCGCCT	Design primers
5832998	GCCGTTGCCGCCATTGCCGCCATTGCC	Design primers
5926419	CGGCGGCAT-GGGCGGCAT-GGGCGGCAT	Design primers
5985478	CGGCGGCGGCAGCGCCGGCGTCGG	Design primers
6029122	GCGTTGTGCCTGTTTTCGTTGCTCCTGTTTTCGTTGTGCCTGTTT	Design primers
6052693	AGCGGGGCCGCGTCA-GGCCGAGCCGCGTCA-GGCCGAGCCGCGTCA-GGCCGGGCCGCGTCA	Design primers
6140075	CTGGTGCTGGCGCTGGGGCTGGTG	Design primers
6230445	CCGCCCCCGCTCCCGCCGCCGCCG	Design primers
6319174	CTGGCGCTGGCCGTGGCGCTGGCT	Design primers
6320263	GCGGCAGCGGAA-GCGGCAGCGGAA-GCGGCAGCCGAT	Design primers
6342027	CGACGCGACAGGCGTCATAAGAACTCGACAGGCGTCATAAGAACTCGACAGGCGTCACAA	Design primers
6512307	CGGCGCCGGCGTCTGCGCTGGCGC	Design primers
6721969	ATCGTGGTCGTGATGGTGATCGTG	Design primers
6723838	CATGGC-CATGGT-CGTGGT-CGTGGT-CGTGGT-CGTGGT-CGTGGT-CGTGGT-CGTGGT	Design primers
6727810	GACCATGTCCATGACCACGATCAT	Design primers
6727840	GACCACGGCCACGATCACGACCATGATCAC	Design primers
6739237	CCACGGCCTCGGCCAGGGCCACGG	Design primers
6963296	GGCGCTGGCGCGCGCGCTGGCGGT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

126460

CCAGGCACAGGCCCACGCCCAGCC