Microsatellites /Tandem Repeats database

Genome: Thermoanaerobacter sp. X513

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
47133ATCCGACATCTGACTTCCGACATCTGACDesign primers
87094ATCCGACATCTGACTTCCGACATCTGACDesign primers
125742AAGTATATAAGTATACAAGTAGATDesign primers
305064GAGATTACAGAAGAGTACAGGAGAATAGAGDesign primers
381545TTTTATTCTATTTTATTTTCTTTTTDesign primers
384071GA-GA-GA-AA-TA-AA-GA-AA-AA-TA-TA-GA-AA-AA-TADesign primers
418946CTATTGGAGAAAATATGGGAGAAAATATGGGAGAAADesign primers
436545AC-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TTDesign primers
470948AAGTAAAA-TAGTAAAA-TAGTAAAADesign primers
535503AAAAGTTAAAAAAACTTTAAAAAAGTAAAADesign primers
645069AAAAAGCCAATAAAAAGCGTATAAAAAGAAAATDesign primers
658231AGGAAAAATGGAAGGGAGAATGGAAGGCAAAATAGADesign primers
683816ATTAAAAAAGGG-ATAAAAAAAGGA-ATAGAAAAAGGA-ATAGAAAAAGGA-ATAGAAAAAGGA-ATAGAAAAAGGADesign primers
700050GAAAAAGAAAGAGAAAAAGAAAAGDesign primers
746439CT-CT-CT-TT-TT-CT-CT-TT-CT-AT-CT-TTDesign primers
865062GCAAGGCGGTTTTGGCCAAGGTGGATTTGGTCAAGGAGGTTTTGGDesign primers
944501AA-AA-AA-AG-AT-TT-TA-AA-AA-GA-TT-AA-AA-AA-AG-AA-ADesign primers
949405CGATTTAACATAGATTTAACACATATTTAACATDesign primers
968867TTTTTTCTATTTTTACTATTTTGTCTADesign primers
969033TAAATAAAATATATAAAATACATAAAADesign primers
977211CCATGAGAAAACATGATAAAAAATGAGAAADesign primers
1038237TC-TT-TT-TC-TA-TT-TC-TT-TC-TC-TA-TTDesign primers
1093349TTTGAATTTTTTTGAATATATTTGTCTTTTDesign primers
1136236ATCCGACATCTGACTTCCGACATCTGACDesign primers
1148151AGA-AGA-AGA-CGA-AGA-AGA-GGA-AGADesign primers
1270144AG-AA-AA-AG-GA-AA-AG-AA-AT-AG-AT-AADesign primers
1351956TTA-TTA-TTC-TTA-TTA-TTA-TTC-TTADesign primers
1371900ACCTTTCCCTTTTCCTTTACCTTTDesign primers
1432808CCGGCTTTAT-TAGGCTTTAT-TAGGCTTTAT-TAGGCTTTATDesign primers
1433365ATTTTTAATTTTATTTTTATTTTTDesign primers
1459065TATTATCTTTTATTTTCTCTTAATATCTTADesign primers
1467945AAATTAAAAATAAATTTAAATTTADesign primers
1493358TATTATCTTTTATTTTCTCTTAATATCTTADesign primers
1496159ATGTAGATGAAGAAGTAGTTGTAGDesign primers
1536877AAACAAAATAAAAAACAACAAAAAADesign primers
1642471GTATTTATGTGTATTTATGAGTATTTAATTDesign primers
1642726TTTGACCTATTTTTGACCCTTTTTTGACCTTATDesign primers
1683492TT-AT-TT-CT-AT-TT-TT-CT-TT-AT-AT-TTDesign primers
1757027TTTCTTTTTTCCTTTTTTTCTTTADesign primers
1767762CCTTTTT-ATTTTTT-ATTTTTT-ATTTTTT-ATTTTTT-ATTTTTTDesign primers
1809428TCTTCTCTCCTCCTCTCTTTTGTTCDesign primers
1826647TTCTTCTGTACTTCTGTTCTTCTTDesign primers
1875503TTTTGTTAAGTTTATGTTAAATTTTTGTTAATTDesign primers
1908859TTCCATTT-TTCCATTT-TTCCAATTDesign primers
1919410TGAAATTGAAAAAGAAATTGAAAADesign primers
1967544AGAACA-AGAACA-AGAGCA-AGAAGADesign primers
1986749CAGAAGTCAGATGTCGGAAGTCAGATGTDesign primers
2022352CTTCAGCTGGTGCTGCTGCTGGTGCTCCAGCTGCTGDesign primers
2161680TGACGTCGTATT-AGACGTTGTATT-AGACGTTGTATT-AGACGTTGTATT-AGACGTTGTATTDesign primers
2161844TAGTTGTTGTATTAGTTGTTGTAGTCGTTTTTGTATDesign primers
2169547ACTGATGTAATCTTATGATGTAATCTACTGATGTAATCTDesign primers
2179951TTTTCTTTTTTTCTCTGTTCTTTTTDesign primers
2181899TTATAAAATTTTATAATATCTTATAGCATTTTATAATATTDesign primers
2244200TGTAATATTTCTGTAACATTGCTGTAATATTTTDesign primers
2245943TCCATTATTTTCCATTCATTTCCCTCATTTDesign primers
2291843AATATAAAATAGTATAATCTAATATDesign primers
2358855ACCCATTCT-TCCCATTCT-TCCCATTCTDesign primers
2382697ATATACTTTAATACAATTTAAAATATTTTADesign primers
2422635AATTAAGAAATTAAAAAATTAATADesign primers
2424115TCACTTTTTCTTTCTTTTTCTCCTTTTTTCDesign primers

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