Microsatellites /Tandem Repeats database

Genome: Spirochaeta thermophila DSM 6192

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
49487CCT-CCT-CTT-CCT-CCT-CTT-CCT-CCTDesign primers
58249GG-GG-GT-GG-GG-AG-GG-GG-GG-TG-TG-GG-GDesign primers
62967GGGAGTGGGTGGGATGGGGTGGGAGGGGGTDesign primers
73731TTATGAGGAGAATTATTGAGGAGAATTATTGAGGAGAATDesign primers
261549GCGGGCGGAGGGGAGGGGGGAGGGGCGGGGGGTGGGDesign primers
270932GGGGGTGGCGGAGGTGGTGCCGGAGGGGGTGGAGGTDesign primers
283094CGGAGGCGGGGGCCGAGGTGGAGGDesign primers
336908AGGTGCGGGAGGTGGGGGAGGTGCGGGDesign primers
380483GGTGGTGGGCGAGGTGGTGAGGGAGGTGGTGGGGGADesign primers
384287GGGTGGGGGGGTGTGGGGTTGGGTGDesign primers
384736AGGGGTGGGGCGGGGAGGAGGGGGGDesign primers
416053CCTCCTCCGGCACCACCACCGCCCGCACCACCCCCTCCGCCACCCDesign primers
537425GGGGGT-GGAGGT-GGAGGT-GGGGGTDesign primers
604238GAAGAGGAGGAGATCGGGGAGGTGGAGGAGGTCGGGGAGGTGGAGGAGATCGGGGAGGTGGAGGAGGTCGGGDesign primers
604311AGGTGGAGGAAGTCGGGG-AGGTGGAGGAAGTCGGGG-AAGTGGAGGAGATCGGGG-AGGTGGAGGAGGTCGGGG-AAGTGGAGGAAGTCGGGG-AGGTGGAGGAGGTCGGGG-AGGTGGAGGAGATTGGGG-AGGTGGAGGAGATCGGGG-AGGTGGAGGAGGTCGGAG-AGGTGGAGGAGATCGGGG-AGGTGGAGGAGATCGGGG-AAGTGGAGGAGATCGGGG-AAGTGGAGGAGATCGGGGDesign primers
616836CACTCCCACACCCACGCCCACGCCDesign primers
619830GGA-GGA-GGG-GGA-GGA-GGA-GGC-GGADesign primers
673202CCTCCACCTCCTCCACCACCCCCADesign primers
689901CCTCCTCTCCCTCCTCTTCCTCCTCACDesign primers
689989CCCGCCGTGCTCGCCGTGCTCGCCGTGDesign primers
718206GGGGGAGGGTGAGGGAGAGGGGGCDesign primers
732846GGAGGTGGAGGAGGCGGTGGAGGTDesign primers
750323GG-TG-AG-GG-AG-AG-GG-TG-TG-GG-TG-TG-GG-TG-CGDesign primers
750997GGGAGAGGGTGAGGGTGAGGGAGGDesign primers
783174TCACCC-CCACCC-CCACCC-CCACCCDesign primers
839631GGGGTGGGGAAGGGGGGAGGAACGGGTGGGGCADesign primers
898644CCCCCACCCCGACCCCCGCCCCCGDesign primers
898694CC-CC-CC-AC-CC-CC-AC-CC-CC-AC-CC-CC-AC-CC-CCDesign primers
899036CC-CC-TC-AC-CC-CC-AC-CC-CC-AC-CC-CC-AC-CC-CC-AC-CC-CCDesign primers
1018945TCATCATCTTCATCATCATCATCGDesign primers
1050692TCGCCCGCGCCCTCGACCTCGCCCDesign primers
1054957GGGAGGAGGAGGGGGAGTGGGATGDesign primers
1143966CCAGTCCCCACACCCACACCCACACCCACACCCACACCCACACCCACACCCACACCCACACCCACACCCACADesign primers
1144039CCACTC-CCACTC-CCACTC-CCACTC-CCACTC-CCACTC-CCACTC-CCACTC-CCACTC-CCACTC-CCACTC-CCACTC-CCACTC-CCACTC-CCACTC-CCACTC-CCACTC-CCACTC-CCACTCDesign primers
1252320CCCCCCGACCCACCGACCCCTCGADesign primers
1265411GAGGACGAGGGCGAGGTCGAGGATDesign primers
1289225AGATTTTTGAGGTTTTTGAGATATTTGAGATTTTTCDesign primers
1338052GG-TG-AG-GG-TG-TG-GG-TG-GG-GG-TG-CGDesign primers
1375917CTCCTCCTCCACCGCCTCCTCTTCDesign primers
1437612AAGGGAAGGGAGAAG-AAGATGAGGGAGAAG-AAGATGAGGGAGAAG-AAGATGAGGGAGAAGDesign primers
1447786CCC-CCC-CCC-TCC-CCC-ACC-ACC-CCCDesign primers
1460943CCCCCTCCCCCACCTCCTCGCCCTDesign primers
1470691CTCCCCCTCCACCTCCCGCTCCCCCTCCCGDesign primers
1558723AGGAGGAAGAGGAGGAAGAGGAGCDesign primers
1735769GTGGGTGTCGGTGTGGGCGTGGGCGTGGGADesign primers
1744836CGCCCCAC-GGCCCCAC-GGCCCCACDesign primers
1771020GAG-GGG-GAG-GGT-GAG-GAG-GAG-GGG-GAG-GAGDesign primers
1820241CCTCCACCACCAGCTCCACCTCCCDesign primers
1903844CTTCTCCTCCTTCTCGTCCTTCTTCTCDesign primers
1923444TC-CT-CA-CC-AC-CC-TC-AT-CA-CC-AC-CC-TC-CC-CC-CC-AC-CCDesign primers
1924008TCCTCCGCCTCCTCCTCTTCCTCCDesign primers
1924137TCCTCCTCCTCCCCTTCCTCCTCCTCCTCTTCCGCCDesign primers
1936419GTCGGC-GTGGGT-GTGGGT-GTGGGT-GTGGGT-GTGGGTDesign primers
1954337CCCTGCCCGCCCGGCCCGGCCTGCCCGDesign primers
1958218TCC-ACC-ACC-ACC-TCC-CCC-TCC-GCCDesign primers
2000769ACCCC-ACCCC-GCCCC-ACACC-TCCCCDesign primers
2000823CCTCCCCCTCCTCCACCCCCTCACDesign primers
2000992CA-CC-TC-CC-AC-CG-CC-CC-CC-TC-CC-AC-CC-CCDesign primers
2001049CG-CC-CC-CG-CC-CA-CA-CC-CC-CT-CC-CCDesign primers
2032440CCCTCTCCCTCCCCCGCTCCCTCGDesign primers
2082363GACGAGGAAGAGGACGGGGACGACDesign primers
2198248CACCCCCTCCAGCACGCCCACCAGCACCTCCTCGAGDesign primers
2202552CCTCCTCCCCCTCCTCCCCCTCGTDesign primers
2210950GAGGTGGAGGGGGAGGAGGTGGTGDesign primers
2226072CCCCT-CCCCT-CCCCA-CGCCT-CCACTDesign primers
2228309ACAGCTCCTCCCACACCGCCTCCCACTCCTCCTCCCDesign primers
2276973TGGGTGTGGGCGTGGGAGTAGGTGDesign primers
2277008GTGGGCGTGGGTGTGGCCGTAGGCDesign primers
2278669GGAGTCGGAGTAGGCGTCGGAGTCDesign primers
2281130GGAGTGGGTGTGGGAGTCGGAGTAGGAGTCDesign primers
2339646GGACGCCGGGGAGGGCGAGGCCGGGGATGGGGAAGACGGGGATGGDesign primers
2387069GAGGGGAGGGGGGCGGAGGGGATGGAGGAGGAGGTGCGGGCGGCGDesign primers
2387502TCCCCCTCACCCTCCACCTCACCCDesign primers
2387601CCCACACCCCCCACACCACCCTCACCCDesign primers
2401535CC-CA-CC-CC-CA-CA-CA-CA-CC-CC-CA-CT-CC-CC-CCDesign primers
2424636CTCCGGCACCACCCACCCAGGCACCACCCGCCCAGACACCACCCADesign primers
2424682CCAGACACCACCCGC-CCAGACACCGCCCAC-CCAGACACCACCCAC-CCAGGCACCACCCAC-CCAGACACCGCCCAC-CCAGACACCACCCAC-CCAGGCACCACCCGC-CCAGGCACCACCCAC-CCAGGCACCACCCAC-CCAGGCACCACCCACDesign primers
2424912CCCCCCTCCCTCCCCCCTCCACCCCDesign primers
2444094CCCCCACCTCCACCCGCACCCCCADesign primers
2460946CCTCCA-CCTCCA-CCCCCA-CCTCCC-CCTGCADesign primers
2461117CGCCACCTCCACCGCCCCCACCACDesign primers

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