Microsatellites /Tandem Repeats database

Genome: Herbaspirillum seropedicae SmR1

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
59661CCCCCTTTTTCTACA-CCCTCTTTTTCTACA-CCCTCTTTTTCTACA-CCCTCTTTTTCTACADesign primers
59722CCCTTTTTCTACAC-CCCTTTTTCTACAC-CCCTTTTTCTACAC-CCCTTTTTCTACAC-CCCTTTTTCTACAC-CCCTTTTTCTACAC-CCCTTTTTCTACCCDesign primers
85045CCAGCGCCAGCA-GCAGCGCCAGCA-GCAGCGCCAGCADesign primers
250166TGGCTCATG-TGGCTCATG-TGGCTCATGDesign primers
287914TAACTATC-TAACTATC-TAACTATCDesign primers
499458GCATTTCTTTCTGCAGTTCTTTCTGCAGTTCTTTCTDesign primers
553461CCTGCCC-ATTGCCC-ATTGCCC-ATTGCCC-ATTGCCC-ATTGCCC-ATTGCCC-ATTGCCC-ATTGCCCDesign primers
613485TTCGCGTCGATTCGCATCGATTCGCATCGADesign primers
661377GATTGATC-GATTGGTT-GATTGGTT-GATTGGTT-GATTGGTT-GATTGGTT-GATTGGTT-GATTGGTT-GATTGGTTDesign primers
679224CAGCAATACA-GAGCAATACA-GAGCAATACADesign primers
734365ATAAGCGCCACATAAGCGCCGCATAAGCGCCGCDesign primers
787594CAGATCAT-CAGATCAT-CAGATCATDesign primers
920897GCCGATACGG-GCCGATACGG-GTCGATACGGDesign primers
1046831TCTTCAC-TCTTCAC-TCTTCAC-TCTTCACDesign primers
1236529GGCCCA-TCCCCA-TCCCCA-TCCCCA-TCCCCA-TCCCCA-TCCCCA-TCCCCA-TCCCCA-TCCCCA-TCCCCA-TCCCCA-TCCCCA-TCCCCA-TCCCCA-TCCCCADesign primers
1458894AACATCAA-AACATCAA-AACATCAADesign primers
1523997AAGCAGCCTTAAGCAGCTTTATGCAGCCTTDesign primers
1597040TGCCTTCTT-TGCCTTCTT-TGCCTTCTTDesign primers
1625416CAAGGACAG-CAAGGACAG-CAAGGACAGDesign primers
1746389GGCATCATC-GGCATCATC-GGCATCATCDesign primers
1810257AGA-AGA-GGA-AGA-GGA-AGA-GGA-AGA-GGA-AGA-GGA-AGADesign primers
1810680CAAGACAAGACAAGACAATACAAGACAAGADesign primers
1818080GGTCCGTATCGGGTCCCTATCGGGTCCGTATCADesign primers
1824355AAGCAGCAAGCAGAAATCAGCAAGCAGAAATCAGCAAGCAGADesign primers
1857360CCATGAAGCAGCGATGAAGCAGCGATGAAGCAGDesign primers
1918380TGATCAATG-TGATCAATG-TGATCAATGDesign primers
1931815GCGCGCTCAT-GCGCGCTCAT-GCGCGGTCATDesign primers
1950190GCCATT-GCCATT-GCCATT-GCCATTDesign primers
2119964GCTGCCTTGTCGGCT-GCAGCCTTGTCGGCT-GCAGCCTTGTCGGCT-GCAGCCTTGTCGGCT-GCAGCCTTGTCGGCT-GCAGCCTTGTCGGCTDesign primers
2144742GTCTTTGGTG-GTCTTTGGTG-GTCGTTGGTGDesign primers
2466303TTGGTGCAG-TTGGTGCAG-TTGGTGCAGDesign primers
2560615CAGTGGATT-CAGTGGATG-CAGTGGATG-CAGTGGATG-CAGTGGATG-CAGTGGATGDesign primers
2651259TAACCAGCA-TAACCAGCA-TAACCAGCADesign primers
2665937GAGGCT-GAGGCT-GAGGCT-GAGGCTDesign primers
2714465AATT-AATT-AATT-AATT-AATT-AATTDesign primers
2728438ACCTCACTG-TCCTCACTG-TCCTCACTG-TCCTCACTG-TCCTCACTG-TCCTCACTG-TCCTCACTG-TCCTCACTGDesign primers
2757553TCGTGCGCA-TCGTGCGCA-TCGTGCGCADesign primers
3006178CCCCTAGCCA-CCCCTAGCCA-TCCCTAGCCADesign primers
3035109CGTGGT-CATGGT-CATGGT-CATGGT-CATGGT-CATGGTDesign primers
3171111AGGTAGATC-AGGTAGATC-AGGTAGATC-AGGTAGATC-AGGTAGATCDesign primers
3208833TTTGCGGACACTTGTGCGGACACTTGTGCGGACACTDesign primers
3263595GCTTATTTCTGCATATTTCTGCTTGTTTCTDesign primers
3278594TGGCGCACTTACTGGCGCACTTATTGGCGCAATTACDesign primers
3289234GGCGGTACTGGTGCA-GGCGGTGCTGGTGCA-GGCGGTGCTGGTGCA-GGCGGTGCTGGTGCADesign primers
3310752TTTGCTGACCTTTCCTGACCATTGCTGACCDesign primers
3392306CAAAGAAT-CAAAGAAT-CAAAGAATDesign primers
3416141CTCAGTTTTTCCTCAGTTCTTCCTCAGTTCTTCDesign primers
3511868CGGAACCACAACGCGAAACCACAACGCGGAACCACAACGDesign primers
3520214CGGCTTATC-CGGCTTATC-CGGCTTATC-CGGCTTATCDesign primers
3621515GCCAATCAGGCTCGCCAATCGGGCTCGCCAATGAGGCTCDesign primers
3633377TCCCCACT-TCCCCACT-TCCCCACT-TCCCCACTDesign primers
3680080AATTAATTAGAAAATTAATTAAAAAATTAATTAAAADesign primers
3686739GTAGGCAATACCTAGGCAATACGTAAGCAATACDesign primers
4321414TTC-TTC-CTC-TTC-CTC-TTC-CTC-TTC-CTC-TTC-CTC-TTCDesign primers
4332527GTAACGGGAAGGTAATGGGAAGGTAACGGGAAGGTAACGGGAAGGTAACGGGACGDesign primers
4372704GCCA-GCCA-GCCA-GCCA-GCCA-GCCADesign primers
4517433AGAAACGA-AGAAACGA-AGAAACGADesign primers
4551851TTTGCTGACATTTGCTGACCTTTCCTGACADesign primers
4863802GTAGCAATACAGTAGCAACACAGCAGCAATACADesign primers
4873994GAAGAG-GAAGAG-GAAGAG-GAAGAGDesign primers
5072612CCCCCCTGTCAT-CCCCCCTGTCAT-CCCTCCTGTCATDesign primers
5165419TTGCATCCA-TTGCATCCA-TTGCATCCADesign primers
5185709TGGCGGA-TGGCGGA-TGGCGGA-TGGCGGADesign primers
5242142AAGAAGAG-AAGAAGAG-AAGAAGAGDesign primers
5489728AGTGCTCAATAAGTACTCAATAAGTACTCAATADesign primers

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