Microsatellites /Tandem Repeats database

Genome: Coraliomargarita akajimensis DSM 45221

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
4997AGTGAG-AGTGAG-AGTGAG-AGTGAGDesign primers
212344AAGTGA-AAGTGA-GAGTGA-AAGTGA-GAGTGA-AAGTGADesign primers
274303CTTCGAT-GTTCGAT-GTTCGAT-GTTCGAT-GTTCGAT-GTTCGATDesign primers
277915ATACGGG-ATACGGG-ATACGGG-ATACGGG-ATACGGGDesign primers
296230GATACGA-GATACGA-GATACGA-GATACGADesign primers
296259ATGCGGGATACGAGATACGGGATACGAGATGCGGGATACGAGATGCGGGATACGAGATGCGGGATACGAGATGCGAGATACGAGATACGGGATACGAGATGTGGGATACGAGDesign primers
296391GATGCGG-GATGCGG-GATGCGG-GATGCGGDesign primers
339873AGTGAA-AGTGAA-AGTGAA-AGTGAADesign primers
465869GAGTGA-GAGTGA-GAGTGA-GAGTGA-GAGTGADesign primers
546330AGGAGAC-AGGAGAC-AGGAGAC-AGGAGAC-AGGAGACDesign primers
908333AAATCGCAATCGAAATCACAATCGAAATCGCAATCGDesign primers
1000367CAGGAACAG-CAGGAACAG-CAGGAACAGDesign primers
1103113CCCATCC-CGCATCC-CGCATCC-CGCATCC-CGCATCC-CGCATCCDesign primers
1165445CACCCT-CACCTT-CACCCT-CACCCT-CACCCT-CACCCTDesign primers
1457369CGCATCCCGTATCTCGCATCTCGTATCTCGCATCTCGTATCTDesign primers
1457412GTATCTCGTATCTCGCATCTCGTATCTCGTATCTCGCATCCCGTATCTCGTATCTCGCATCCCDesign primers
1496642CGCATCT-CGCATCT-CGCATCT-CGCATCT-CGCATCTDesign primers
1557539CCTCTGG-CCTCTCG-CCTCTGG-CCTCTGG-CCTCTGG-CCTCTGG-CCTCTGG-CCTCTGGDesign primers
1600072CGTATCACGCATCT-CGTATCACGCATCT-CGTATCCCGCATCTDesign primers
1601233CGATTTCGATTACGATTACGATTACGATTTCGATTACGATTTCGATTADesign primers
1611377CGATTG-CGATTG-CGATTG-CGATTGDesign primers
1747801ATCCCGT-ATCCCGT-ATCCCGT-ATCCCGTDesign primers
1824499AGGAGTC-AGGAGTC-AGGAGTC-AGGAGTC-AGGAGTCDesign primers
1876002GGGGAGA-CAGGAGA-CAGGAGA-CAGGAGA-CAGGAGA-CAGGAGA-CAGGAGA-CAGGAGA-CAGGAGADesign primers
1876231TCACTC-TCACTC-TCACTC-TCACTCDesign primers
1913010ACTCTC-ACTCTC-ACTCTC-ACTCTCDesign primers
1920815CACCCT-CACCCT-CACCCT-CACCCT-CACCCTDesign primers
2008418CTCCCCCTCACTCTCACTCTCACTCTCACTCTCACTCTCACTCTCACTCTCACTCTCACTCTCACTCTCACTCTCACTCTCACTCTCACTCTCACTDesign primers
2012094CTGGATTCAGAGTCGTCATCGCTCGATTCAGAGTCGTCGTCGCTCGATTCAGAGTCGTCATCGCTCGATTCAGAGTCGTCGTCGCTGGATTCAGAGTCGTCATCGCTCGATTCAGAGTCGTCGTCGCTGGATTCGGAGTCGTCATCGDesign primers
2012244GATTCAGAATCCTCGTCGCTGGATTCGGAGTCCTCGTCGCTGGATTCAGAGTCGTCGTCGCTGDesign primers
2012319TCATCAGTCGATTCGGAATCATCGTCAGTCGATTCGGAATCATCGTCAGTCGATTCGGAGTCATCGTCAGTCGATTCGGAGTCATCGTCAGTCGATTCGGAGTCATCGTCAGTCGATTCGGAGTCATCGTCAGTCGATTCGGAGTCATCGTCAGTCGATTCGGAGTCATCGTCAGTCGATTCGGAGTCADesign primers
2031001CATCCCG-TATCCCG-GATCCCG-TATCCCG-TATCCCG-TATCCCG-TATCCCG-TATCCCGDesign primers
2182658CGCCTCTGGCCTCT-CGCCTCTGGCCTCT-GGCCTCTGGCCTCTDesign primers
2213864CCCGCATCCCGTATCCCGCATCCCGTATCCCGTATCCCGCATCCCGTATCCCGTATCCCGTATDesign primers
2779095CGATGC-CGATGC-CGATGC-CGATGCDesign primers
3290687AAAGGAG-ACAGAAG-ACAGGAG-ACAGGAG-ACAGAAG-ACAGAAG-ACAGAAG-ACAGAAG-ACAGGAGDesign primers
3293363TCGATT-TCGATT-TCGATT-TCGATTDesign primers
3294449AAATCGAAATCCAAATCGAAATCGCAATCGAAATCCDesign primers
3315393TCGATT-TCGATT-TCGATT-TCGATTDesign primers
3317017TCGAAA-TCGAAA-TCGAAA-TCGAAADesign primers
3327807CGCAAAGG-CGCAAAGG-CGCAAAGGDesign primers
3331332GAGTGAAGGTGATAGTGAAGGTGAGAGTGAAGGTGADesign primers
3331484GAACGTC-GAACGTC-GAACATC-GAACGTC-GAACATC-GAACGTC-GAACATC-GAACGTCDesign primers
3336840TCGAAATCGTAATCGAAATCGAAATCGTAATCGTAADesign primers
3391544TTAGGAG-ACAGGAG-ACAGGAG-ACAGGAG-ACAGGAG-ACAGGAG-ACAGGAG-ACAGGAG-ACAGGAG-ACAGGAG-ACAGGAG-ACAGGAG-ACAGGAG-ACAGGAG-ACAGGAGDesign primers
3440147GAGTGAAAGTGA-GAGTGAAAGTGA-GAGTGAGAGTGADesign primers
3440754GATGCGAGATGCGAGATACGT-GATGCGAGATGCGAGATACGT-GCTACGAGATGCGAGATACGT-GCTACGAGATGCGAGATACGTDesign primers
3442836TATCCCG-TATCCCG-TATCCCG-TATCCCGDesign primers
3479249AAAGTG-AAAGTG-AAAGTG-AAAGTG-AAAGTGDesign primers
3479280GAGTGA-GAGTGA-GAGTGA-GAGTGA-GAGTGA-GAGTGA-GAGTGADesign primers
3553216TCGAAA-TCGAAA-TCGAAA-TCGAAADesign primers
3577800CAGGAGACAGGAGATGGGAGACAGGAGACAGGAGACAGGAGACAGGAGACAGGAGACAGGAGACGGGAGACAGGAGATGGGAGADesign primers
3649013CCGCTGT-CTCCTGT-CTCCTGT-CTCCTGT-CTCCTGT-CTCCTGT-CTCCTGT-CTCCTGT-CTCCTGT-CTCCTGT-CTCCTGT-CTCCTGTDesign primers
3748857CGGGATACGGGATACGAGATACGAGATACGGGATACGAGATACGGGATGCGGGATACGGGATADesign primers

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