Microsatellites /Tandem Repeats database

Genome: Coraliomargarita akajimensis DSM 45221

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
4997AGTGAG-AGTGAG-AGTGAG-AGTGAGDesign primers
274304TTCGATG-TTCGATG-TTCGATG-TTCGATG-TTCGATG-TTCGATG-TTCGATGDesign primers
277915ATACGGG-ATACGGG-ATACGGG-ATACGGG-ATACGGGDesign primers
296230GATACGA-GATACGA-GATACGA-GATACGADesign primers
296276CGGGATACGAGATG-CGGGATACGAGATG-CGGGATACGAGATG-CGGGATACGAGATGDesign primers
296391GATGCGG-GATGCGG-GATGCGG-GATGCGGDesign primers
339873AGTGAA-AGTGAA-AGTGAA-AGTGAADesign primers
465869GAGTGA-GAGTGA-GAGTGA-GAGTGA-GAGTGADesign primers
546330AGGAGAC-AGGAGAC-AGGAGAC-AGGAGAC-AGGAGACDesign primers
1000367CAGGAACAG-CAGGAACAG-CAGGAACAGDesign primers
1103115CATCCCG-CATCCCG-CATCCCG-CATCCCG-CATCCCG-CATCCCGDesign primers
1165456TCACCC-TCACCC-TCACCC-TCACCCDesign primers
1496642CGCATCT-CGCATCT-CGCATCT-CGCATCT-CGCATCTDesign primers
1557552GCCTCTG-GCCTCTG-GCCTCTG-GCCTCTG-GCCTCTG-GCCTCTGDesign primers
1611377CGATTG-CGATTG-CGATTG-CGATTGDesign primers
1747801ATCCCGT-ATCCCGT-ATCCCGT-ATCCCGTDesign primers
1824499AGGAGTC-AGGAGTC-AGGAGTC-AGGAGTC-AGGAGTCDesign primers
1876004GGAGACA-GGAGACA-GGAGACA-GGAGACA-GGAGACA-GGAGACA-GGAGACA-GGAGACA-GGAGACADesign primers
1876231TCACTC-TCACTC-TCACTC-TCACTCDesign primers
1913010ACTCTC-ACTCTC-ACTCTC-ACTCTCDesign primers
1920815CACCCT-CACCCT-CACCCT-CACCCT-CACCCTDesign primers
2008424CTCACT-CTCACT-CTCACT-CTCACT-CTCACT-CTCACT-CTCACT-CTCACT-CTCACT-CTCACT-CTCACT-CTCACT-CTCACT-CTCACT-CTCACT-CTCACT-CTCACTDesign primers
2012358TCATCGTCAGTCGATTCGGAG-TCATCGTCAGTCGATTCGGAG-TCATCGTCAGTCGATTCGGAG-TCATCGTCAGTCGATTCGGAG-TCATCGTCAGTCGATTCGGAG-TCATCGTCAGTCGATTCGGAG-TCATCGTCAGTCGATTCGGAGDesign primers
2031016ATCCCGT-ATCCCGT-ATCCCGT-ATCCCGT-ATCCCGT-ATCCCGTDesign primers
2182673GCCTCTG-GCCTCTG-GCCTCTG-GCCTCTG-GCCTCTGDesign primers
2213904ATCCCGT-ATCCCGT-ATCCCGT-ATCCCGTDesign primers
2779095CGATGC-CGATGC-CGATGC-CGATGCDesign primers
3290713AGACAGA-AGACAGA-AGACAGA-AGACAGADesign primers
3293363TCGATT-TCGATT-TCGATT-TCGATTDesign primers
3315393TCGATT-TCGATT-TCGATT-TCGATTDesign primers
3317017TCGAAA-TCGAAA-TCGAAA-TCGAAADesign primers
3327807CGCAAAGG-CGCAAAGG-CGCAAAGGDesign primers
3331489TCGAACGTCGAACA-TCGAACGTCGAACA-TCGAACGTCGAACADesign primers
3391546AGGAGAC-AGGAGAC-AGGAGAC-AGGAGAC-AGGAGAC-AGGAGAC-AGGAGAC-AGGAGAC-AGGAGAC-AGGAGAC-AGGAGAC-AGGAGAC-AGGAGAC-AGGAGACDesign primers
3440779CGAGATGCGAGATACGTGCTA-CGAGATGCGAGATACGTGCTA-CGAGATGCGAGATACGTGCTADesign primers
3442836TATCCCG-TATCCCG-TATCCCG-TATCCCGDesign primers
3479249AAAGTG-AAAGTG-AAAGTG-AAAGTG-AAAGTGDesign primers
3479280GAGTGA-GAGTGA-GAGTGA-GAGTGA-GAGTGA-GAGTGA-GAGTGADesign primers
3553216TCGAAA-TCGAAA-TCGAAA-TCGAAADesign primers
3577816GGAGACA-GGAGACA-GGAGACA-GGAGACA-GGAGACA-GGAGACADesign primers
3649016CTGTCTC-CTGTCTC-CTGTCTC-CTGTCTC-CTGTCTC-CTGTCTC-CTGTCTC-CTGTCTC-CTGTCTC-CTGTCTC-CTGTCTC-CTGTCTCDesign primers

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