Microsatellites /Tandem Repeats database

Genome: Gordonia bronchialis DSM 43247

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
166071CCGTTGGTGCCGGAGTCGTTGGTGCCGGAG-CCGTTGGTGCCGGAGTCGTTGGTGCCGGAG-CCGTTGGTGCCGGAGCCGTTGGTGCCGGAGDesign primers
191013TCGGTG-TCGGTG-TCGGTG-TCGGTGDesign primers
235883CCCCGCTGATCGTGCGCCCGATCCCGTTGATCGTGCGCCCGATCCCGTTGATCGTGCGCCCGADesign primers
300304CACCTCGACCGACGTGGACACCGCGACCGACGTGGACACCGCGACCGACGTGGADesign primers
432821CGGTGCG-CGGTGCG-CGGTGCG-CGGTGCGDesign primers
485086TGTTCTGGCGCTGACGTTGATCTGGCGCTGACGTTGATCTGGCGCTGACGTDesign primers
518280CGCTGAGACCTACTACAA-CGCTGAGACCTACTACAA-CGCTGAGACCTACAACAA-CGCTGAGACCTACGACAA-CGCTGAGACCTACGACAADesign primers
613113CCGCGAAGAAGACGACAGCGAAGAAGACGACAGCGAAGAAGACGADesign primers
613160GCGAAGAAGACCGCCGCGAAGAAGACCACCGCGAAGAAGACCACCDesign primers
670579TCCTCTGTTGGTTGAGCCGCGACCGCTGTTGGTTGAGCCGCGACCTCTGTTGGTTGAGCCGCGDesign primers
798173TCGGTCCCGAGC-CCGGTCCCGAGC-CCGGTCCCGAGC-CCGGTCCCGAGC-CCGGTCCCGAGCDesign primers
798256CCCGAA-CCCGAA-CCCGAA-CCCGAADesign primers
833009CGCCGCCAAGAAGGTCGCCGCCAAGAAAGTCGCTGCCAAGAAGGTDesign primers
917563CCCGACCCGAGT-CCCGACCCGAGT-CCCGGCCCGAGTDesign primers
1010330AGTCGGGAGTCGTGGCTCGACCAGT-GGTGGGGAGTCGTGGCTCGACCAGT-GGTGGGGAGTCGTGGCTCGACCAGT-GGTGGGGAGTCGTGGCTCGACCAGTDesign primers
1084074CCGCCGAGGGCACCGCGGATTCCGACGAGGGCACCGCGGATCCCGTCGAGGGGACCGCGGATTCCGCCGAGGGCACCGCAGATACCGCCGAGGGCACCGCGGGTCDesign primers
1107413GCTTCGGACCGGGCTTCGGTCCGGGCTTCGGGCCGGDesign primers
1107451GGACCGGGATTCGGACCGGGCTTCGGACCGGGCTTCDesign primers
1217543GCCGGCTCAACCAGCAGTGGGGGCGGCTCAACCAGCAGTAGGGGCGGCTCAACCAGCAGTGGGDesign primers
1394796TCAGGCCACCTCGAT-TCAGGCCACCTCGAT-TCAGGCCACGTCGATDesign primers
1432500GGCCAGCAGGGCTACGGCCAGCAGGGTTACGGCCAGCAAGGCTACDesign primers
1530612CCGCCGGTC-CCGCCGGTC-CCGCCGGTCDesign primers
1550296CGACCATGTCTGATCCCGCCCATGTCTGATCCCGCCCATGTCTGATCCDesign primers
1587620TCAGCGCCGGATCCTTCAGCGTCGGATCCTTCAGCGTCGGATCCTDesign primers
1841360AACCTCGAAGTCCGG-CACCTCGAAGTCCGG-CACCTCGAAGTCCGGDesign primers
1943309CAGGGGCGCTGACAACAAGGGCGCTGACAACAGGGACGCTGACAADesign primers
1999494GCGGTAACCAGAACA-GCGGTAACCAGAACA-GCGGCAACCAGAACADesign primers
2001421TCGGTG-TCGGTG-TCGGTG-TCGGTG-TCGGTGDesign primers
2001957TCACTGCCGTTCCATCGTCACTGGCGTTCCATCGTCACTGCCGTTCGATCGDesign primers
2167905CTGGGGGAACGGAGACTGGGGGAACGAAGACTGGGGGATCGGAGADesign primers
2186626GTGCACCGACGGCACCGGAAGATGCGCCGACGGCACCGGAAGATGCGCCGACGGCACCGGAAGDesign primers
2189241GCGGCACCGGATTCCGCGGCG-GAGGCATCGGATTCCGCGGCG-GAGGCATCGGATTCCGCGGCG-GAGGCATCGGATTCCGCGGCGDesign primers
2256383CAGCCCCAGTACCCGGGTCAACCCCAGTACCCGGGTCAGCCCCAGTACCCCGGTDesign primers
2256501GGCCCCAGCCCGGAC-AGCCCCAGCCCGGAC-AGCCCCAGCCCGGACDesign primers
2329832AGTCAGGGTCGGAGAAGTCAGGGTCGGAGGAGTCGGGGTCGGAGADesign primers
2387475TGCAGGGGAGTTGGG-CGCAGGGGAGTTGGG-CGCAGGGGAGTTGGG-CGCAGGGGAGTTGGGDesign primers
2472386TCGACCATCCCGACC-TCGACCATCCCGACC-TAGACCATCCCGACC-TCGACCATCCCGACC-TAGACCATCCCGACCDesign primers
2517280CCCTGAGATCCCTGCCCGGAGATCCCTGCCCGGAGATCCCTGDesign primers
2686851GCAGAACGGTCTGGG-GCAGAACGGTCTGGG-GCACAACGGTCTGGG-GCACAACGGTCTGGGDesign primers
3137176GCCGGTTGGGCGGGC-GCCGGTTGGGCGGGC-GCGGGTTGGGCGGGCDesign primers
3137232GTACTGGGGTTGGCTGTACTGGGGTTGGGTGTACTGGGGTTGGCTDesign primers
3326999GGTCGGCGT-GGTCGGCGT-GGTCGGCGTDesign primers
3359467TATCGG-TATCGG-TATCGG-TATCGG-TATCGGDesign primers
3416035TATCGATCGATATCTCGATCGATATTTCGATCGATADesign primers
3522917GTGCATCAACCGGA-CTGCATCAACCGGA-CTGCATCAACCGGADesign primers
3673465CCCCCCGTCTCGTTG-GCCCCCGTCTCGTTG-GCCCCCGTCTCGTTG-GCCCCCGTCTCGTTGDesign primers
3822607CAGCACCGCGTTTCACGCCGACAGCACCGCGATTCTCGCCGACAGCACCGCGATTCTCGCCGADesign primers
3822917CGGAAAACGCGGTGCTGTCGGCGCGAAACGCGGTGCTGTCGGCGCGAAACGCGGTGCTGTCGGDesign primers
3868960GCCGGACCAGATGGG-GCCGGACCAGATGGG-GCCGGACCAGACGGG-GCCGGACCAGACGGGDesign primers
3879017GCGATCAGGTCTGG-GCGATCAGGTCTGG-GCAATCAGGTCTGGDesign primers
4175674GAGCCGCTGCCGTTGCCTGAGTCGCTGCCGTTGCCTGAGTCGCTGCCGTTGCCTGAGCCGCTGCCGTTGCCTGAGCCACTGCCGTTGCCTDesign primers
4239537ATCAGCGGTCGGGTT-CTCAGCGGTCGGGTT-CTCAGCGGTCGGGTT-CTCAGCGGTCGGGTTDesign primers
4314184TACTGGGGGTTCGGGTACTGGGGGTTCGGATACTGGGGATTCGGGDesign primers
4343434GGGCCACCG-GGGCCACCG-GGGCCACCGDesign primers
4438311TCTGCGTCTATCCA-TCTGGGTCTATCCA-TCTGGGTCTATCCA-TCTGGGTCTATCCADesign primers
4459586TGTCGCCGAATCTGTTGTCCCCGAATCTGTTGTCCCCGAATCTGTDesign primers
5039505CGGTGT-CGGTGT-CGGTGT-CGGTGT-CGGTGTDesign primers
5047509TCGTCATCG-TCGTCATCG-TCGTCATCGDesign primers
5130224CCTTGCTGTTCTCGACCCTGCTGTTCTCGACCCTGCTGTTCTCGADesign primers
5156470GGCACCGCGTGATGAATGGGCGCCGCGTGATGAATGGGCGCCGCGTGATGAATGDesign primers

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