Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Geobacillus sp. Y412MC10

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
129165	TGGCTTTAGCTTCGGCTTCGGCTT	Design primers
208674	TCAACCAAC-TCAACCAAC-TCAAGCAAC	Design primers
251607	TTGTTGCTGCTGTTGTTGCCGCTGTTATTGCCGCTG	Design primers
292013	CCTCAAGACA-CTTTAAGACA-CTTTAAGACA-CTTTAAGACA	Design primers
469471	GATAGA-GATGGA-GATGGA-GATAGA	Design primers
658987	AAGCAGCATAGTAAAGAGCATAGTAAACAGCATAGG	Design primers
703801	CGCAAAAGCAAAGGCAAAAGCAAA	Design primers
721816	GCCGGAGGCGCCGGTGGCGCCGGTGGC	Design primers
825674	TTCTTT-TTCTTG-TTCTGT-TTCTGT-TTCTTT-TTCTTT	Design primers
910518	GTCCACCAG-GACCTCCAG-GACCACCAG-GACCTCCGG-GACCTCCGG-GACCTCCAG	Design primers
911027	GCAGGGCCA-GCAGGGCCA-GCGGGGCCA-GCAGGGGCA	Design primers
911070	CAGCAGGGCCAGCGGGGCCAGCAGGGG	Design primers
911118	CGGGGGCAACGGGTGCAACAGGTGCAACAGGTGCAACAGGTGCAACAGGTGCAACAGGGGCAACAGGGGCAA	Design primers
920483	CGAAGGTATGCAAAGGCATGCCAAGGTACG	Design primers
1156513	AACGCTCGAACGTATACTCTCGAACGTATACTCTCGAACGTA	Design primers
1156605	AGTATGCCAAAGCTCAGACAAATGCCAAAGCTCAGACGTATGCCAAAGCTCAAA	Design primers
1335835	TGTGCCTCTACAGGCCTTGATATGTCTCTGTAGGCCTTGATATGTCTCTACATACCTTGA	Design primers
1340336	TTAACATCGCGCGTCG-GCAGCATCGCGCGTCG-GCAGCATCGCGCGTCG-GCAGCATCGCGCGTCG	Design primers
1340535	TTCCCTTAT-TTCCCTTAT-TTCCCTGAT	Design primers
1580928	GTTGCTGCTGCTGTTGTTCTTGCT	Design primers
1833968	AAACCAGAATTCAAACCAGAATACAAACCGGAGTTC	Design primers
1949428	AGGCCGATGCCGATGCCGAGACCG	Design primers
2128114	TAAAGTGGTGGAAAGTGGTGCAAAGTGGGG	Design primers
2226973	TCACGATCATGACCACGACCACGA	Design primers
2233471	CTCAAG-CACAAG-CACAAG-CACAAG-CACAAG	Design primers
2289127	GGCAAGGGTAAGGGCAAAGGCAAA	Design primers
2338012	CCTTTTTGAAAAT-AGTTTTTGAAAAT-AGTTTTTGAAAAT	Design primers
2479021	ATTCGAAAAAAATAGAAAAAAGTCGAAAAA	Design primers
2544225	AGATG-AGTTG-AGTTG-AGAAG-AGCTG	Design primers
2624146	ACCAGCAAACCGGAAGCAAGCAAACCGGAAGCAAGCAAACCAGAA	Design primers
2694889	GGGAACGGCAACGGGAATGGTAACGGCAACGGCAAC	Design primers
2694967	AATGGA-AACGGA-AACGGA-AACGGA	Design primers
3027937	GGAATAGAAAAAGCATAGAAAAAGCATAGAAAA	Design primers
3269352	AAAAACAAACAAAACTAAACAAAAACATTC	Design primers
3331251	AGAAGAAGATGAAGAACAAGAGGA	Design primers
3345684	AATAGATTAATAAATTCATAGATT	Design primers
3449731	ATTCTGTTATTCTTTTATTCTCTT	Design primers
3482736	TCTGCGATTCCTCCGGCGATTCCTTCTGCGGCTCCT	Design primers
3494742	TTGCCGTTGCTGCTGCCGTTCCCG	Design primers
3669881	GCTGCCACCACC-GCTGCCACCACC-ACTGCCTCCACC	Design primers
3862573	CTCCTGCCCCTGCTCCTGCTTCTGCTTCTG	Design primers
3921730	GTTGTTTCC-GTTGTTTCC-ATTGTTTCC	Design primers
3950677	AACCACCATAAACGACCAGAAACCGCCATC	Design primers
4175696	CTTCGGTCGTTCCTGTTTCGGTTGTACCTGTTTCGTTGGTTCCTG	Design primers
4206217	CGCGACCGGGACAGCGACCGGGAC	Design primers
4385575	ACGATAAGCCCGATGAAAATAAGCCGGATGAAGATAAGCCGGACG	Design primers
4436182	GCGGTTCCTCCTGCAGTAGCGGGTCCTCTTGCAGCAGCGGTTCGTCCTGCAGCA	Design primers
4514406	ATCTTAAT-CTCTTAAT-CTCTTAAT-CTCTTAAT	Design primers
4584219	TCCCCATCCCGATCTCCATGCCCA	Design primers
4633032	TTACAACATTTCAACATTACAACA	Design primers
4638771	GGC-AGC-CGC-AGC-GGC-AGT-GGC-GGC-GGC-AGC	Design primers
4669083	TGGTCG-TGGTCG-TGGTTG-TGGTTG-TGGTCA-TGCTCG	Design primers
4809115	CCCGTGGCTCCCGTTGCTCCCGTTGCT	Design primers
4809143	CGGTTGCTC-CGGTTGCTC-CTGTTGCTC	Design primers
4809301	GCTCCGGTTGCCCCTGTTACCCCGGTTGCTCCTGTTGCTCCCGTGGCCCCCGTT	Design primers
4809365	CTCCTGTTG-CTCCTGTTG-CTCCGGTTG	Design primers
4809393	ACCAGTTACTCCTGTTGCTCCCGTTGCTCCTGTTGCCCCTGTTACTCCGGTTGC	Design primers
4809464	CTCCTGTTGCTCCTGTTACCCCTGTTGCTCCTGTTG	Design primers
4809536	CACCTGTTGCTCCTGTTGCTCCTGTTG	Design primers
4809583	CCAGTTGCTCCCGTTGCTCCTGTTGCTCCCGTTGCT	Design primers
4809625	ACTCCTGTG-GCTCCTGTG-GCTCCTGTG-GCTCCTGTG	Design primers
4809816	ACCTGTTGCTCCCGTTGCTCCTGTCACTCCCGTTGCACCCGTTGCTCCGGTTGC	Design primers
4809950	CACCTGTTG-CTCCTGTTG-CTCCTGTTG-CTCCTGTTG	Design primers
4810050	ACCTGTTGCTCCCGTTGCTCCTGTCACTCCCGTTGCACCCGTTGCTCCGGTTGC	Design primers
4810150	CCTGTTGCTCCCGTTGCTCCTGTCGCT	Design primers
4810229	CTCCCGTTG-CTCCCGTTG-CTCCTGTTG	Design primers
4810258	CCGGTTGCTCCTGTTACCCCGGCTGCTCCTGTTGCCCCAGTTTCTCCTGTTGCCCCAGTTTCTCCTGTTGCC	Design primers
4810841	CTCCTGTTACTCCTGTTGCTCCCGCTTCTCCTGTTGCTCCTGTCGCTCCCGTTG	Design primers
4810921	GCTCCTGTT-ACTCCTGTT-GCTCCTGTT-GCTCCTGTT	Design primers
4810963	GTTGCTCCTGTTGCTCCTGTTACCCCCGTTGCTCCTGTAGCTCCCGTTACTCCT	Design primers
4811200	GCTCCTGTTGCCCCTGTTGCTCCTGTT	Design primers
4811324	GCTCCCGTTGCACCTGTTACTCCCGTTTCTCCTGTTGTTCCCGTTGCACCTGTT	Design primers
4811551	TCCTGTTGCTCCCGTTGCTCCTGTTGC	Design primers
4811591	GTTGCTCCCGTGGCTCCCGTTGCTCCT	Design primers
4811623	TCCGGTTGCTCCTGTTAC-CCCGGTTGCTCCTGTTAC-CCCGGCTGCTCCTGTTGC	Design primers
4811685	CTCCTGTTGCTCCTGTTACTCCAGTCGCTCCAGTTACCCCAGTTGCTCCTGTTACCCCTGTTGCTCCGGTTG	Design primers
4811846	GCCCCCGTTGCTCCTGTTGTTCCGGTTGCTCCTGTTACCCCAATTGCTCCTGTTGCCCCAGTTGCTCCTGTT	Design primers
4812055	TCCTGTTGCTCCCGTTGCTCCTGTTGC	Design primers
4812095	GTTGCTCCCGTGGCTCCCGTTGCTCCT	Design primers
4812127	TCCGGTTGCTCCTGTTAC-CCCGGTTGCTCCTGTTAC-CCCGGCTGCTCCTGTTGC	Design primers
4812200	CCTGTTACTCCAGTCGCTCCAGTTACCCCAGTTGCTCCTGTTACCCCTGTTGCT	Design primers
4812350	GCCCCCGTTGCTCCTGTTGTTCCGGTTGCTCCTGTTACCCCAATTGCTCCTGTTGCCCCAGTTGCTCCTGTT	Design primers
4812559	TCCTGTTGCTCCCGTTGCTCCTGTTGC	Design primers
4812587	CCAGTTACTCCTGTTGCTCCCGTTGCTCCCGTTGCTCCTGTTGCTCCTGTTACTCCGGTTGCTCCTGTTGCT	Design primers
4812738	CTCCTGTTACTCCTGTTGCTCCCGCTTCTCCTGTTGCTCCTGTCGCTCCCGTTG	Design primers
4812818	GCTCCTGTT-ACTCCTGTT-GCTCCTGTT-GCTCCTGTT	Design primers
4812860	GTTGCTCCTGTTGCTCCTGTTACCCCCGTTGCTCCTGTAGCTCCCGTTACTCCT	Design primers
4813097	GCTCCTGTTGCCCCTGTTGCTCCTGTTGCTCCCGTT	Design primers
4813153	TCCGGTTGCTCCTGTTACCCCTGTTGCTCCTGTTACCCCGGCTGCTCCTGTTGCTCCAGTTTCTCCTGTTGC	Design primers
4813226	CCTGTTACTCCAGTCGCTCCAGTTACCCCAGTTGCTCCTGTTACCCCTGTTGCT	Design primers
4813376	GCCCCCGTTGCTCCTGTTGTTCCGGTTGCTCCTGTTACCCCAATTGCTCCTGTTGCCCCAGTTGCTCCTGTT	Design primers
4813540	GCTCCCGTTGCTCCTGTTGTTCCGGTTGCTCCTGTTACCCCGGTTGCTCCTGTT	Design primers
4813633	CCTGTTACTCCAGTCGCTCCAGTTACCCCAGTTGCTCCTGTTACCCCTGTTGCT	Design primers
4813783	GCCCCCGTTGCTCCTGTTGTTCCGGTTGCTCCTGTTACCCCAATTGCTCCTGTTGCCCCAGTTGCTCCTGTT	Design primers
4813992	TCCTGTTGCTCCCGTTGCTCCTGTTGC	Design primers
4814032	GTTGCTCCCGTGGCTCCCGTTGCTCCT	Design primers
4814061	TGTTCCTGTTACCCCGGTTGCTCCTGTTACCCCGGCTGCTCCTGTTGCCCCAGT	Design primers
4814128	CCTGTTACTCCAGTCGCTCCAGTTACCCCAGTTGCTCCTGTTACCCCTGTTGCT	Design primers
4814278	GCCCCCGTTGCTCCTGTTGTTCCGGTTGCTCCTGTTACCCCGGCTGCTCCTGTTGCCCCAGTTTCTCCTGTGGCTCCCGTTGCACCAGTT	Design primers
4814369	CTCCTGTTG-CTCCCGTTG-CTCCCGTTG-CTCCCGTTG	Design primers
4814491	GTTGCTCCGGTTGCTCCTGTTACCCCGGTTGCCCCTGTTTCTCCGGTTACTCCTGTCGCTCCGGTTGCACCC	Design primers
4814622	TCCTGTTGCTCCGGTTGCCCCTGTTTCTCCGGTTACTCCTGTCGCTCCTGTTAC	Design primers
4814694	TCCTGTTGCTCCCGTGGCTCCTGTTACTCCTGTTGCTCCGGTTGCTCCCGTAGC	Design primers
4814818	GCTCCTGTTGCTCCCGTTGCTCCTCTTTCTCCTGTTGCTCCCGTTGCACCTGTT	Design primers
4814981	CTCCTGTTGCTCCGGTTGCTCCCGTTGCTCCTGTTG	Design primers
4815070	GCACCCGTGGCTCCTGTTGCACCCGTTGCTCCCGTCTCCCCAGTGGCTCCTGTT	Design primers
4815125	CTCCTGTTGCTCCTCTTTCTCCTGTTGCTCCGGTTGCTCCCGTTGCTCCTGTTG	Design primers
4815224	CTCCTGTTGCTCCCGTTGCTCCGGTTG	Design primers
4815313	GCTCCTGTTACTCCTGTTACTCCTGTTGCCCCTGTT	Design primers
4815352	CCAGTTACTCCAGTTGCACCCGTTGCTCCTGTTGCACCAGTTACTCCTGTTGCT	Design primers
4815431	CTCCTGTTGCTCCGGTTGCTCCCGTTGCTCCTGTTG	Design primers
4815512	CTCCTGTTGCTCCCGTTGCTCCGGTTG	Design primers
4815601	GCTCCTGTT-ACTCCTGTT-ACTCCTGTT	Design primers
4875634	AGAAGCTCCTGCTGAAGCTCCAGCAGAAGCACCGGC	Design primers
4968579	TCCTCAGTATATCGCTAGTCAGTATATCGCTAGTCAGTATATCCC	Design primers
5322711	CAAGTGCAAGGGCAAGTGCAAGGG	Design primers
5537582	GAT-TAT-GAA-TAT-GAT-GAT-TAT-TAT	Design primers
5554134	ACCATTCC-CCCATTCC-CCCATTCC	Design primers
5603535	GCAAATCCAAGATCAAATCCAACACCAAATCCAAGA	Design primers
5670036	GCCCAT-ATCCAT-ATCCAT-ATCCAT-ATCCAT-ATCCAT	Design primers
5748912	CGCTTTTAAGCTTTTATGCTTTTA	Design primers
5763648	TGGTGATGATGATGATGATGTTGA	Design primers
5789585	TCCTCT-TCATCT-TCATCT-TCATCT	Design primers
5818734	AATCCTGGTCCAAAACCCGGTCCAAAGCCTGGTCCA	Design primers
5860490	GCCTGG-CCTCTG-CCTCTG-CCTCTG-CCTCTG-CCTCTG-CCTCTG-CCTCTG-CCTCTG-CCTCTG-CCTCTG-CCTCTG	Design primers
5894227	GCCTTGACCTTGGCCTTGACCTTG	Design primers
5967451	CATGCCGCCCATTCCGCCCATGCCGCC	Design primers
6046679	AGGGT-GAAGT-GAGGT-AAGGT-GAGGT-GAGGT-GAGGT-GAGGT-GAGGT	Design primers
6299430	GGATCTACCGGCGGGTCTACTGGCGGATCCACCGGGGGATCTACCGGT	Design primers
6314585	CCGATC-CTGATC-CTGATC-CTGATC	Design primers
6408417	AAGGCGGCGGTGAAGGCGGCAGTGAAAGCGGCGGCG	Design primers
6533641	CTCCTCCTG-ATCCTCCTG-ATCCTCCTG	Design primers
6569405	ATGCCGATACCGACGCCGATACCG	Design primers
6590611	TGGGAATCTAAGGGGATCTAAGAGAATCTA	Design primers
6770593	GCTGATGCTGCTGGTGATCCTGAT	Design primers
7015347	CCTTCCCGG-TCTTCCCGG-TCTTCCCGG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

129165

TGGCTTTAGCTTCGGCTTCGGCTT