Microsatellites /Tandem Repeats database

Genome: Geobacillus sp. Y412MC10

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
292015TCAAGACACT-TTAAGACACT-TTAAGACACT-TTAAGACACTDesign primers
911129GGTGCAACA-GGTGCAACA-GGTGCAACA-GGTGCAACA-GGTGCAACADesign primers
1156514ACGCTCGAACGTATACTCTCGAACGTATACTCTCGAACGTATDesign primers
1340338AACATCGCGCGTCGGCAGCATCGCGCGTCGGCAGCATCGCGCGTCGGCDesign primers
2233473CAAGCA-CAAGCA-CAAGCA-CAAGCA-CAAGCADesign primers
2338013CTTTTTGAAAATA-GTTTTTGAAAATA-GTTTTTGAAAATADesign primers
2624149AGCAAACCGGAAGCA-AGCAAACCGGAAGCA-AGCAAACCAGAAGCADesign primers
3027938GAATAGAAAAAGCATAGAAAAAGCATAGAAAAADesign primers
3669882CTGCCACCACCGCTGCCACCACCACTGCCTCCACCGDesign primers
4514407TCTTAATC-TCTTAATC-TCTTAATC-TCTTAATCDesign primers
4809538CCTGTTGCT-CCTGTTGCT-CCTGTTGCTDesign primers
4809626CTCCTGTGG-CTCCTGTGG-CTCCTGTGG-CTCCTGTGGDesign primers
4809952CCTGTTGCT-CCTGTTGCT-CCTGTTGCT-CCTGTTGCTDesign primers
4814374GTTGCTCCC-GTTGCTCCC-GTTGCTCCCDesign primers
5554135CCATTCCC-CCATTCCC-CCATTCCCDesign primers
5670037CCCATA-TCCATA-TCCATA-TCCATA-TCCATA-TCCATADesign primers
5860493TGGCCT-CTGCCT-CTGCCT-CTGCCT-CTGCCT-CTGCCT-CTGCCT-CTGCCT-CTGCCT-CTGCCT-CTGCCT-CTGCCTDesign primers
6046687GTGAG-GTAAG-GTGAG-GTGAG-GTGAG-GTGAGDesign primers
6533642TCCTCCTGA-TCCTCCTGA-TCCTCCTGADesign primers
6590612GGGAATCTAAGGGGATCTAAGAGAATCTAADesign primers

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