Microsatellites /Tandem Repeats database

Genome: Escherichia coli O26:H11 str. 11368

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
75382GCAGCAACAGCAGCAGCGCCAGCADesign primers
252581ATCCTG-CTCTGA-CTCTGA-CTCTGA-CTCTGA-CTCTGA-CTCTGA-CTCTGA-CTCTGA-CTCTGA-CTCTGA-CTCTGA-CTCTGA-CTCTGA-CTCTGA-CTCTGADesign primers
323871ATAGGTCACTGTGACCTAGGGG-GTAGGTCATAGTGAGCTAGGGG-GTAGGTCATAGTGAGCTAGGGG-GTAGGTCATAGTGAGCTAGGGG-GTAGGTCATAGTGAGCTAGGGGDesign primers
853830AGTTAATTATAATATAATTATAAGTTAATTATADesign primers
860109AGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGDesign primers
895766TTCCTTTCTTGCTTTCTTCCTCTCDesign primers
1071649GATGAA-GATGAA-TATGAA-GATGACDesign primers
1073334GCAGCAGCAGTATCAGCAGCCGCADesign primers
1180135GTAAGGGGCTTCGAAGGGGCTTTTAAGGGGCTTDesign primers
1333183CGGTGAGGGTGACGGTGACGATGADesign primers
1362474GCAGCAGCATCAGCAGCGCCAGCADesign primers
1480688ATGTCACGACATGTCACGGCGTGTCACTACDesign primers
1549518ATTGGGATTGTGATTGGCATTGCGDesign primers
1561448TGCTGCACT-GGCTGCACT-GGCTGCACTDesign primers
1608812GCGGCAGGC-CCGGCAGGC-CCGGCAGGCDesign primers
1764970TAATGATTTTTAATGTGTTTTTGTGATTTTDesign primers
2009787TATTTTTAGTTTTATTTTTATTGTDesign primers
2145262CCCGACAGCCTGACAGCCTGACAGDesign primers
2158548TATTCTCTGTAGTAATCTCTGTTGTATTCTCTGTAADesign primers
2209772TTTTTTATTCTCTGTTGTATTCTCTGTTGTATTCTCDesign primers
2383967AATGCACAATAGTGCACAAATTTGCACAATDesign primers
2510426CGGGATCGGCATCGGCATCGGGTTDesign primers
3041535CCACCGGATATCACCGGAAAGCACCGGATADesign primers
3048556CGAAAAAAGTTACAAAGAAAGTTACCGAAAAAGTTADesign primers
3074828TTATATGCCTTTATTTGCTTTTTTATGCCADesign primers
3123133AACAAA-CAGAAA-TAGAAA-TAGAAA-TAGAAA-TAGAAA-TAGAAA-TAGAAA-TAGAAADesign primers
3245632ACGGAACAGATCGGAACGAATCGGADesign primers
3273485GTGCTGCGCTTTGCTGTGCAATGCTDesign primers
3586409GTCGAAGAAGTTGAAGAAGTTGAAGAADesign primers
3825962GTTGTGATGTTGTGTTGTTGTGTTDesign primers
4077464CCTTTGCTTTCTTTTCCTTGCGTTTDesign primers
4415060TT-TT-TG-TT-TT-AT-TT-TT-TG-TT-TT-TA-TT-TT-TTDesign primers
4626569CACCAG-CACCAG-CGCCAG-CAGCAGDesign primers
4670202TGGTGTTGATGTTGGTTTTGATGTDesign primers
4797083AGCTAA-ACCTGC-ACCTGC-ACCTGC-ACCTGC-ACCTGC-ACCTGC-ACCTGC-ACCTGCDesign primers
5019552TGAGGGAGAGGGTTAGGGTGAGGGDesign primers
5054662TTATATATAATTTTATATATTACTATATAADesign primers
5397635ATGGGCGGCATGGGTGGCATGGGCGGCDesign primers
5509596AA-TA-TA-TA-TA-AA-TA-TA-TG-AA-TA-TA-TA-AA-TADesign primers
5509627ATGAATAT-ATGAATAT-ATGAATATDesign primers
5533407CTCACCAATATTCACCAGTATTCACCAGTADesign primers
5576061TTCG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGG-CTGGDesign primers
5583678GCCTTCGC-ACCTTCGC-ACCTTCGCDesign primers
5676124AAGCGGCGAAAGCGGTGAAAGCGGCAADesign primers

Please help us improve this resource by reporting problems, suggestions etc.