Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Methylobacterium extorquens DM4

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
10559	CGAGGACGCGGACGAGGGCGTGGA	Design primers
69311	GCGGTCTCGGTCGCGGTGGCGGTC	Design primers
86516	CAAGTCCTGATGCAAGCCCTGCTGCAAGCCCGGATG	Design primers
89457	TCAGGCGCAGGCTCCGGCGCAGGC	Design primers
151006	TGCCAAGCCGTCCTTCGCGAAGCCCTCCTTTGCCAAGCCCCCCTT	Design primers
182689	TCGCTG-GCGCTG-GCGCTG-GCGCTG	Design primers
196966	CTCGAGCTCGCGCTGGAGCACGAG	Design primers
204924	GAAGCCGAAGGCGAAGGCGACGCC	Design primers
211034	CGAGGCTGAGGCCCAGGCCGAAGCCGGGGC	Design primers
215017	CCGAAGGCGAAGCCGAGGCCGACG	Design primers
235258	CGCGC-CGCGA-TGCGC-TGCGC-CGTGC	Design primers
431583	CTGCGGGCTTGCGGGCCTGCCGGC	Design primers
513924	GGTCTCGCTCTCGGCCTCGGCCTC	Design primers
548317	GTCGCGGTCGAGATCGCGGTCGCG	Design primers
577677	GCCTCCTGCCAAGGACTT-CGCTCCTGCAAAGGACTT-GGCTCCTGCAAAGGACTT-GGCTCCTGCAAAGGAATT	Design primers
582449	GGCCTCGCCCTCGGTCTCGCCCTCCGCCTC	Design primers
585640	AGCGACGGCGCCCGAGGAGACGGCGTCCGAAGGGACGGGGCTCGA	Design primers
587772	CTCGGGGGCCGCCTCGGGGGCTCCCGCGGGGGCCGT	Design primers
634243	CCCGG-CCCAG-GCCGG-CCCGG-CCCGG	Design primers
635544	CCTGCC-CTTGCC-CTTGCC-CTTGCC	Design primers
643005	CGGGCTTGGGCGCGGGCTTGCGCTCGGCCTTGGGAG	Design primers
770028	CAAGGCAAGTTTTCGGAGCAAGCCAAGTCTTCGGAACAAGGCAAGTCGCCGGAG	Design primers
803304	CGGCACGTCCGTCACGTCCGTCACGTC	Design primers
804893	CCATGACCATGCGCATGACGATGA	Design primers
975731	CAACGCCTACGCCTACGCCACCGC	Design primers
983171	GGATCGCTCTTGCCGGGCTCGCTCTTGACGGGTTCGCTTTTGGCG	Design primers
1001209	GATCACAGCCATGACCACAGCCATGAGCACGGCCAT	Design primers
1125628	GCTGGT-GCTGGT-GCGGGT-GCGGGT-GCGGGT	Design primers
1137599	GAGCGCGAGCCCGACCGCGAGCGC	Design primers
1168364	CAGGAGCGGGAGCAGCAGCCGGAG	Design primers
1257174	CCACGGGCACGGCCACAGCCACGC	Design primers
1269582	TTGCGCGGTGGCGCGGTGGCGCGG	Design primers
1302947	TGGCGGTGGCATGGGCGGCGGCATGGGCGGTGGCAT	Design primers
1303608	CCCGGCCGCACCCGGCGGCGCGCCGCCGCA	Design primers
1377887	CGGTGGCGGAGGCGGCGGCGCTGG	Design primers
1465077	ACTTCTACGGTCCGGTCTTCTACCGCCCGGTCTTCTATGGTCCGC	Design primers
1484810	ATGCCTGACGAGCCCTGACGAGCCCTGACG	Design primers
1537356	GGAGCCGGTGCCGGTGCCGGAGGC	Design primers
1560530	GCCTTCGTCTTCACCTTCGGCTTC	Design primers
1615652	AGGACG-AGGCCG-AGGCCG-AGGGCG	Design primers
1693363	CCTCGACCACGAACTCGACCTCGT	Design primers
1698071	TCGGCT-TCGGCT-TCCGCT-GCGGCT	Design primers
1717639	GACCTTGCCCGACTGTGCCCAACCTTGCCG	Design primers
1725451	CGCCGACGGCGAAGCCGACGACGA	Design primers
1750361	GCCGGTGCGGGTGCCGGAGCCGGC	Design primers
1760754	GGGCACGGGCAGCGGCACGCGCAC	Design primers
1791084	CAGCCG-TAGCCG-TAGCCG-TAGCCG-TAGCCG	Design primers
1836001	GCA-GCG-ACA-GCG-GCA-GCA-GCA-GCA	Design primers
1891731	CTCTGCCAACCCTTCGGCCAACCCCTCTGCCAACCC	Design primers
1952885	GCCCCATCCTTGGCCCCGTCCTTGGCGCCGTCCTTG	Design primers
2006929	GCCAGC-GCCAGC-CCCAGC-ACCAGC-GCCCGC	Design primers
2037652	CTCTGCCGGTGGCTCTGCCGATGATCCTGCCGGTGG	Design primers
2056080	AAGGCAAGGACACGGGCAAGGACACAGGCAAGGACGCGGGCAAGGACA	Design primers
2075092	CGCCCGCGCCCC-TTCCCGCGCCCC-TTCCCGCGCCCC	Design primers
2104960	GCGACCGGCCAAGCAACTGGCCAAACGGCCGGCCAA	Design primers
2112559	GCCCCCGCCAAGCCTGCCCCACTCAAGCCTGTCCCCCTCAAGCCT	Design primers
2120482	CCGCCCCCTCCCCCGCCCCCGTCC	Design primers
2131106	GCGCTGCGGCGCGGCGGCGCGGCG	Design primers
2147456	ACGCCGCCGCCGAAGCCGAAGCCG	Design primers
2180788	TGCGGAAGCGGATGCGGTTGCGGG	Design primers
2181554	GCCGTC-GCCGTC-GCGGTC-GCCGTA	Design primers
2241300	CGGATCAAGGCTCGA-CCGGGCAAGGCTCGA-CTGGGCAAGGCTCGA-CCGGGCAAGGCTCGA-CCGGGCAAGGCTCGA-CCGGGCAAGGCTCGA	Design primers
2276630	CCGGCCGC-CCAGCCGC-CCAGCCGC-CCGGCCGC	Design primers
2305105	CGC-CGC-CGC-TGC-CGC-CGC-GGC-CGC	Design primers
2314495	GGGCTGGCCGAAGGGTGGGCCGAAGGGTTGGCCGAT	Design primers
2347721	GGCCCAAGCCCAGGCCCAGGCACA	Design primers
2372337	CGTCGCCGTGGGCGGCGGGCTCGTCACCCTGGGCCGCAGGCTCGTCACCATGGGCCGCGGGCG	Design primers
2410616	CGTCCCGCCCCGTCGCGGCCTGTCC	Design primers
2410945	GCGGCGAGCATCGCAGCCGCGAGCAGCGCGGCGGCGAGCGCCTCA	Design primers
2474444	ATCGGCGCTC-TACGGCGCTC-TACGGCGCTC	Design primers
2478171	AGGAAATAT-AGGAAATAT-AGGAAATCT	Design primers
2641467	TCGCCATCGCCCGCGCCATCGCCG	Design primers
2829510	GCCGGGGAAAAGGCACTTTCGAGGAAAAGGCACTTTCTGGGAAAAGGCACT	Design primers
2829562	GGGGGAAAAAGCACCT-GGGGGAAAAAGCACCT-GGGGGAAACGGCGCCT	Design primers
2842727	CGGTGGCGGTGCCGGAGGCGGCGG	Design primers
2852781	CAAGAAGGGATCAATGAGGGATCAAGGGGGGAT	Design primers
2934074	CGACGGCAACGGCGACCGCTACGG	Design primers
2939835	CCGCCGCGGTCGCCGCCGCGATCACCACCCCGGTCGCCGCCGCGGCTG	Design primers
2942532	GCCGCCGCGGAAGCCACCGCCGCCGAACCCGCCACCGCGGAAGCCGCCGCCACCGAACCCGCCGCCGCGGAAGCCACCGCCACCGAAGCC	Design primers
2993339	TCCTCGTCCGCGCCCTCGTCGTCG	Design primers
3007206	GGCATGAGTTCCGGCAGGGGTTCCGGCACGAGTTCGGGCAACAGTTCC	Design primers
3026907	GGCTCGCGGCTGCTCGCGGTGGCGCTCGGC	Design primers
3093672	AGGCCGAGACCGAGGTCGCGGCCG	Design primers
3196179	GCGCCAGCGCCTGCGACAGCGTCA	Design primers
3228412	TTCGTCATCGTCTTCGCCTTCGTG	Design primers
3234801	GCGCCGCCCGGCGCAGCTCGCCGCCGCTCG	Design primers
3241594	GTACTACGGCCCGCGCCGTTTCTACGGCCCGCGTCGCTTCTACGGCCCGCGTCG	Design primers
3305162	TGATTCATAACCTGGTTCATAACCTGGTTCATAATC	Design primers
3305202	TCGTAGTTTGAACGGTAGTTTGAACCGTTGTTTGAA	Design primers
3305645	GCGTCG-CCGTCG-CCGTCG-CCGTCG	Design primers
3373979	ATCGGCATCGCCATCGGTACCGGC	Design primers
3389289	GCCCCG-TCCCCG-TCCCCG-TCCCCG	Design primers
3407135	CGCCACCGCCTCCGCGACCGGCAC	Design primers
3493054	GCGGAGGCCAAGCCAGAGGCCAAGTCGGAGGCCAAG	Design primers
3534442	CCCGGCATGGGGGCTGGCATGGGGACCAGCATGGGG	Design primers
3666388	ATGACTCCTTGCATGGCTCCTCGCGTCACTCCTTGC	Design primers
3761604	CGCCGACGGCGATGCCGACGCGGA	Design primers
3854467	CGAGAA-CGAGGA-CGAGGA-CGAGGA	Design primers
3880114	GCT-GAT-GCT-GCT-GGT-GAT-GCT-GCT	Design primers
3888993	CCTCGGCCTCGCGCTCGGCCTCGG	Design primers
3922371	GCCGC-CCCGC-GCCGC-GCCGC-GCCGC	Design primers
4020753	GGCGATGGCGGTGGCGAGGGCGAG	Design primers
4021362	CGGCGCGTAGGCGCGTCGGCGCGC	Design primers
4034013	CGCCTTCGTCTTCGCCGTCGCCTT	Design primers
4035424	TCCTCGTCCTCCTCGTCGTCCTTG	Design primers
4039037	CATTTGGCCGCCCATCTGGCCACCCATTTGCCCGCC	Design primers
4160657	AGGGGGACGGACTCGATGGGGATGGACTCGAAGGAGACGGGCTCG	Design primers
4170744	CATGGTGCGTGCATGGTGAGCGCATGGTTCTTG	Design primers
4182680	ATCCGGGCGAGAGGACATGCGGGCAAGAGGGCCTGCGGGCGAGAGGGC	Design primers
4208265	GCGCCAGCGCCTGCGACAGCGTCA	Design primers
4244402	CGCAGGCCGCCGGCCGGGACATGCAGGCCCCCGGCAGGGAGATGCAGGCCCCCGGCAGGGAGA	Design primers
4287326	CGGCGGGGCGGGGCGCGGGGCGACG	Design primers
4491156	GTC-ATC-ATC-ATC-GTC-ATC-GTC-ATC	Design primers
4505585	GGCCCCATGACCATCGCGCCATGACCATCGCGCCATGACCAT	Design primers
4537044	ACCGCG-ACGGCG-ACGGCG-ACGGCG	Design primers
4538668	TCCTCCGAGTCCTCGTCGTCCGAATCGTCGGCCTCGGCGTCCTCG	Design primers
4560518	TCCGAGCCGGCCTCCATGCCGGCCTCCATGCCGGCC	Design primers
4563687	CGGCGGATGATGCACCGGCACATGATGCGCAAGCGGATGATGCAT	Design primers
4594673	GTGGC-GAGGC-GGGGC-GGGGC-GAGGC	Design primers
4697600	GCGTTCGGTCGCGTTCCGGCGCGGTCGGGC	Design primers
4700670	CCACCGCCTCCGCCTCCGCCTCCGCCACCA	Design primers
4704325	ACGACGAGGACGACGAGGACGAAG	Design primers
4735658	GCCACCACCGGGGCGTCCACCGGGGGCACCGCCGGG	Design primers
4765762	CGGGGCCGGAGCCGGGGCCGGAGC	Design primers
4786809	GCCCATTTGGCCGGTGCCCACTTGGCCTGTGCCCACTTGGCTTGTGCCCACTTGGCTTGTGCCCAATTGGCCGGT	Design primers
4800676	ATCGCGCGTCTCATCGCGTCTCTCATCGCCCGTCTC	Design primers
4836775	GCAAGGGACAGGGCAAGCGACGGGGCAGGGGACGGG	Design primers
4858539	GCCCTCGCGCTCGACCTCGGCCTC	Design primers
4882596	CCTGCTAAGACGCTTGCCAAGACGCCTGCCAAGACC	Design primers
4896149	GCTTGCCGTGCCCCTTACCGTGCCCCTTGCCGTGCC	Design primers
4903732	GACGGCGCTGACGGTGCTCACGGCGCT	Design primers
4909706	GCCGCCGCCGTCGCCGTCGCCGCT	Design primers
4950546	GCGGTCGGTGGCGGCGGGTGGGGGCCGGTG	Design primers
4967572	CGGGTGACGGATCGACTGACGGATCGACTGACGGAT	Design primers
5011316	GCCCCGCGCCGGCCGGCGCCGCCGCGCGCG	Design primers
5041663	GCCGACGCCTGCCCCGACTCCTGCGCCGACCCCGGC	Design primers
5052456	CTCGCCCGGCTCGCCCAGCGCGCCCGG	Design primers
5107677	GGGCCGGGGCGGGCAGCGCCGTGCC	Design primers
5112834	CTGGGCCCCTTCCTGAGCCCGTTCCTGAGCCCCTTC	Design primers
5135241	CTCCCTGC-ATCCCTGC-ATCCCTGC	Design primers
5161553	TTCCGCGGCCTTGGCTTCGGCCGCCTTGGCCTCGGCGACCTTGGC	Design primers
5175094	GGTTCGAGTGGCTCGCGGCGTGGTGGGAGGGGCTCACGGCGTGGTTCAAGGGGCTCGCGGCGTGGTTCAAGGGGCTCGCGGCGTGGTTCAAGGGGCTCGCGGCGC	Design primers
5192739	GAAAATTGCGAAAAATTTCGGAAAAATGGG	Design primers
5193539	AACCCGGCCGGC-AACCCGGCCGGC-ACCCCGGCCGCC	Design primers
5224644	GCAAGAACGGCAAGGACGGCAAGAGCG	Design primers
5255787	CCCGCGCCCATGCCCGCTCCCGTGCCGGCTCCCATG	Design primers
5320476	ATGCAGACCATGTAGACGATGCACACCGTGCAGACGATGACCACCATGTAGACG	Design primers
5344370	TGGCGGCGGCGGCGGCGGTGGCCG	Design primers
5357506	CGTCGCCCTCGCGGTCGCCGTCGC	Design primers
5390483	CGAGGGCGAGGAGGAGGGCGAGGG	Design primers
5430135	GGGCAAGGCGCTGGGCAATGCTCTTGGCAAGGTGCT	Design primers
5439512	CCGCTCCGGCCGCACCGGCCGCGCCGG	Design primers
5453161	CCAACCCCCCGGCCAGCCCCCTGGCCAGCCCCCTGG	Design primers
5525769	TA-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC	Design primers
5579424	CCGACGCCGATGACGACGCCGAAG	Design primers
5584903	CGGGTCGGGTAT-CGGGTCGGGTAT-CGGGTCAGGTGT	Design primers
5611985	AGGCGCAGGCTCAGGAGCAGGAGC	Design primers
5613846	GGGTTCGGCCCAGGATTTGGCCCAGGGTTCGGCCAC	Design primers
5642820	GCCAGCGCCATCGCCAGCACCAGC	Design primers
5669054	GAGCCGGTGCCGGAGCCGGAGCAG	Design primers
5714012	GCTCGGCCGCCTCGGCCGGCTCGGCCG	Design primers
5723394	TCCCGGCACCCCCAG-CGCCGGCACCCCCAG-CGCCGGCACCTCCAG-CGCCGGCACCTCCAG	Design primers
5758945	GGACGCGGGCGGTCGAGGGCGTGCGCGGGC	Design primers
5771139	GCCATC-GCCATC-GCCACC-GCCAAC	Design primers
5773633	CGCCGAGGCCCACAAGCCCGAGACCCACAAGTCCGAGGCCCCCAA	Design primers
5788130	TTGACCTTGTCCTTGAACTGGACC	Design primers
5804232	GCTTCGGCCTTGGCTTTCGCTTCGGCTTCTGCCTCGGCCTTCGCTTCTGCTTTCGCCTTGGCTTCCGCCTCG	Design primers
5804319	TTGGCCTTGGCGTCGGCCTTCGCCTTGGCC	Design primers
5804460	GCGGCGGCCGCCTTCGCCTCGGCCGCCTTGGCAGCCTCCGCCTTC	Design primers
5821024	GCCACCCCTTGGGCGCCCCTTGGCCAACCCTTT	Design primers
5853643	GTGGCGAGCGCGGCGAGCGTCGCGAGC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

10559

CGAGGACGCGGACGAGGGCGTGGA