Microsatellites /Tandem Repeats database

Genome: Methylobacterium extorquens DM4

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
577687AAGGACTTCGCTCCTGCAAAGGACTTGGCTCCTGCAAAGGACTTGGCTCCTGCADesign primers
1302948GGCGGTGGCATGGGCGGCGGCATGGGCGGTGGCATGDesign primers
1484812GCCTGACGAG-CCCTGACGAG-CCCTGACGAGDesign primers
1791085AGCCGT-AGCCGT-AGCCGT-AGCCGTDesign primers
2056081AGGCAAGGACACGGGCAAGGACACAGGCAAGGACGCDesign primers
2241305CAAGGCTCGACCGGG-CAAGGCTCGACTGGG-CAAGGCTCGACCGGG-CAAGGCTCGACCGGG-CAAGGCTCGACCGGG-CAAGGCTCGACCGGGDesign primers
2314499TGGCCGAAGGGTGGGCCGAAGGGTTGGCCGATGGGTDesign primers
2474445TCGGCGCTCT-ACGGCGCTCT-ACGGCGCTCTDesign primers
3305165TTCATAACCTGG-TTCATAACCTGG-TTCATAATCTGGDesign primers
3305203CGTAGTTTGAACGGTAGTTTGAACCGTTGTTTGAACDesign primers
3305646CGTCGC-CGTCGC-CGTCGC-CGTCGCDesign primers
3389290CCCCGT-CCCCGT-CCCCGT-CCCCGTDesign primers
4560522AGCCGGCCTCCA-TGCCGGCCTCCA-TGCCGGCCTCCADesign primers
4786822GTGCCCACTTGGCCTGTGCCCACTTGGCTTGTGCCCACTTGGCTTDesign primers
4896150CTTGCCGTGCCCCTTACCGTGCCCCTTGCCGTGCCCDesign primers
5175120GAGGGGCTCACGGCGTGGTTCAAGGGGCTCGCGGCGTGGTTCAAGGGGCTCGCGGCGTGGTTCDesign primers
5525770AC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CCDesign primers
5723396CCGGCACCCCCAGCG-CCGGCACCCCCAGCG-CCGGCACCTCCAGCG-CCGGCACCTCCAGCGDesign primers

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