Microsatellites /Tandem Repeats database

Genome: Escherichia coli BL21-Gold(DE3)pLysS AG

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
122574TGAGGGAGAGGGTTAGGGGGAGGGDesign primers
154504TTATATATAATTTTATATATTACTATATAADesign primers
303344TAACGCGCTAACGCCCTGACGCGCDesign primers
396192TTCTGAACGTTCTGAGCGTACTGAACGDesign primers
417213AA-AA-AA-TA-AA-AA-CA-AA-AA-AT-AA-AA-CA-AA-AADesign primers
958841AACACAAC-AACACAAC-ATCACAACDesign primers
1218942CTACAAATTCTGCAAATTCAACAAATTDesign primers
2189996TACAGAGAATACAACAGAGATTACTACAGAGAATAADesign primers
2469378GCCACCACCGCCTCCGCCACCCGCGCCGCCGCCAGCACCACCACCDesign primers
2843446TCATCTTCATATTCATCTTCATCGDesign primers
3046504TCTGCGGCCGCTTTTGCTGCAGCGGCTTTTTCAGCTGCAGCTTTTGCCGCTGCCGCTTTTDesign primers
3616248TGAGGGAGAGGGTTAGGGTGAGGGDesign primers
3707280GTG-CTG-GCG-CTG-CTG-CTG-TTG-CTGDesign primers
3766565TTAAATAATTAAATCATTAAAAAADesign primers
3783492TGGTGATGGTGGTGGTAATGGTGGDesign primers
3786603TTCAGCTTCAGGTTCTGCTTCCGCDesign primers
3804812GCCGCTTTCACCGCTTTCGCCGCTTCCDesign primers
4062721CATGCCGCCCATGCCACCCATGCCGCCCATACCGCCDesign primers
4329629TGGTGTTGATGTTGGTTTTGATGTDesign primers
4447791TTATATATTTTAATTTATTTTAATAAATTTDesign primers
4465596CTAAAC-CTGCAC-CTGCAC-CTGCAC-CTGCAC-CTGCACDesign primers

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