Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Bifidobacterium animalis subsp. lactis DSM 10140

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
902	CGGTGGCGCTGGCAGTGGCGGAGG	Design primers
17974	GGCAGGTGACAATGCTCAGTCTGGTGACAATGCTCAGTCTGGTGACAATGCCCA	Design primers
18732	AAGGCCATGGCCAAGGTCAAGGGC	Design primers
110099	CATGACTATAGCGTGATTATAGCGTGATTATAG	Design primers
110198	CGCAGAGT-TGCAGAGT-TGCAGAGT	Design primers
110223	GCGGATTT-GCGGATTT-GCGGATTT	Design primers
111128	ATGACGATGAAGCTGACGATGGCG	Design primers
151880	GCGGCTCGTCGGGCGGCGCGTCCGGCGGATCGTCGA	Design primers
179933	CGCAGATAG-GGCAGATAG-GGCAGATAG	Design primers
198818	GCGGAGGCA-ACGGAGGCA-ACGGAGGCA-ACGGAGGCA	Design primers
216712	TCGCCGTCCCCGTCGCCTTCACCG	Design primers
241267	ACTGTGCAGACCGCTGCGCAGACCACTGTGCACCCC	Design primers
254583	ACTGTTGTTGCTGCCGTTGTTGCTGCCGTTGTTGCT	Design primers
254620	CCGTTGTTGCCG-CCGTTGTTGCCG-CTGGTGTTGCCG	Design primers
258400	TTCTCCTTCTTCTTCTTCTTCTCCTCCTCC	Design primers
258483	TTTTTACGCAGACG-GATTTACGCAGACG-GATTTACGCAGACG	Design primers
263459	GTGACATCCCGTAAGCATTGACGACATCCCGTAAGAGTTGGTGACATCCCGTACGCACTG	Design primers
263582	CCTGTTACGGGCCAGCTTGTTACGGGCCAGCCTGCTGCGGGCTAG	Design primers
273924	GCCGAGTCCGAGGCCGAGGCGGAG	Design primers
274158	AATCCCTTACGGGATGTCACCAACTCTTACGGGATGTCGCCATCCATTACGGGATGTCAG	Design primers
278139	CTTCAACTCTTACGGGATGTCGCAATCTCTTACGGGATGTCGCAATCTCTTACGGGATGT	Design primers
278388	GGGATGATGACATCCCGTAAGGGTTGGTGGCATCCTGTAAGGGTTGATGGCCTCCCGTAG	Design primers
281180	ACATCCCGTAACAGATTAGGGTAGCCCGTAACAGATTAGGGTAGCCCGTAACAGATTTGG	Design primers
284585	AG-CG-CG-CG-AG-GG-CG-TG-CG-AG-GG-CG-CG-CG-GG	Design primers
286797	TGACATCCCGTAACGGATAAGGACATCCCGTAAGAGATTATGACATCCCGTAACAGAAAA	Design primers
296156	GCGCGCTAATGCTTACGGGATGTCGTTAATGCTTACGGGATGTCGTTAATGCTTACGGGA	Design primers
299362	GAATCCGAATGCCAATCCGAACCC	Design primers
300053	GAGGACATCGACGAGGATATCGACAACGACATCGAC	Design primers
306855	CGCGGATCTCGTGGATCTCGCGGATCTCCCGGATCT	Design primers
310182	GCAGAAGGAGAAGCAGAAGAAGAA	Design primers
316132	GTGCAGTTCGGCGCAGTTCGATGTAGTTCGACGCAGTTCG	Design primers
325056	GTGCAGTTCGGCGCAGTTCGATGTAGTTCGACGCAGTTCG	Design primers
332019	GAGCGCGGTGGTTGCGCCAG-GGTGCCGGTGGTTGCGCCAG-GGTGCCGGTGGTTGCGCCAG-GGTGCCGGTGGTTGCGCCAG	Design primers
333806	AAGGGGTAGAGGGGGGTAGAGAGGGGTAGA	Design primers
336341	GAAGAAAGG-CAAGAAAGG-CAAGAAAGG	Design primers
341688	GGAATCTCAAGGAATTCCAAGGAATATCAAGGAATATCAA	Design primers
378633	CCGAGGCCGCGGCCGAAGCCGAGG	Design primers
390019	TCGACCTCGACATCCACCTCGACA	Design primers
496770	GGTCGATGTGGTCGACGTCGTCGATGT	Design primers
509387	GATTAGGTGGATTGGGTGGATTGGGTG	Design primers
511265	GCTCGTGCGCGTGCTCATGGTCGT	Design primers
533315	CGACACCGT-GGACACCGT-GGACACCGT	Design primers
542634	AGAGGTCGCGCACAGATCGCGCACAGATCGCGC	Design primers
627133	CGCAGATT-GGCAGATT-GGCAGATT	Design primers
770307	CGTCGGAATCGCCGTCGCAGTCGCCGTCGCAGTCGC	Design primers
833574	CCACAATGGCCGCAATGGCCACAAGGG	Design primers
896481	GGATGCTGCGGTTGCTGCGGATGCAGC	Design primers
1092418	ACCGCCACCGTCACCGACACCGTC	Design primers
1323885	GCATCACTTGGACATCACCTGGACATCACTTGG	Design primers
1328942	CGATGTCATCGTCGGCGTCATCGTCGGCGTCATCGT	Design primers
1340797	ATTACGCAGAGGCGGAGAGATTACACAGCGGCGGGGAGATTACGCATAGCCGGAGAG	Design primers
1344955	CGATATTTCAATATTTCAATATTT	Design primers
1397433	CTCTTACC-CTCTTACC-CTCTTCCC	Design primers
1553520	TCGTCGGCATCGTTGGCATCGGCGGCA	Design primers
1673443	TGGATTCAGTGGATTCATTGGATTCTG	Design primers
1699361	TCTGCCATCCTCAGCTATCCTCTGCCACCT	Design primers
1718750	GTTGATGCAGCTGATGCAGCTGATGCA	Design primers
1732100	GTCTTCCGTATCTTCCGTGTCTTCCGA	Design primers
1738661	CAGTGCAGATCAGCGCAGCTCAGTGCAGCT	Design primers
1778701	GCGGCGGTGGCGGAGGCGGCGCCGGCGACG	Design primers
1925649	GATGCCAACGATGCCGACGATGCCAGC	Design primers
1928036	AGCATCCCCCCGAGCATGCCGCCGAGCTTCCCGCCG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

902

CGGTGGCGCTGGCAGTGGCGGAGG