Microsatellites /Tandem Repeats database

Genome: Exiguobacterium sp. AT1b

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
43174TTTCTTTA-CTTCTTTA-CTTCTTTADesign primers
223628TTAAACGTTTAAACTTTTAAACGGDesign primers
329522TTATAAATAAATATTAATAATTATTCATAADesign primers
395564CGGTTCTTCTTCAGCCGGCTCCTCGTCAGCCGGTTCTTCCTCGGCDesign primers
568096TCTGCTTCTGCGTTTGCTTCGGCTDesign primers
800922GATAATCGATATTCGCTAATCGATTATCDesign primers
927836ATTTC-ATTAC-GTTTC-GTTTC-ATTCCDesign primers
996632TTCGATTATTTTCAATCATTTTCGAACATTDesign primers
1088153ATGTTTCAAAAATGTAACAAAAATGTTTCGACADesign primers
1310108GCCATCGTCATCCCCATCGCCGTCDesign primers
1700796TTGTGGATAAACTGTGGATATATTGTGGATAAADesign primers
1702821AAAAGAAAAATAAAAAGAAAAAGCDesign primers
1727225TTGTGGATAACTCTGTGGATAACCCTATGGATAACTDesign primers
1878937CGAGCCGTCAAGCCGTCGAGGCGTDesign primers
1900883TTTTTATTTTTTTTCGTTTTTTTGTDesign primers
2071171CATGGGCGGCATGGGTGGAATGGGCGGDesign primers
2319517CGTGGCGGTGGCGGTGGCCGTGGTDesign primers
2435184ATC-CTC-ATC-ATC-GTC-CTC-ATC-TTCDesign primers
2526756GCAGCGGCAGCAGCTGCGGCAGCGDesign primers
2825694ATCGCCGTCGCCATCACCGTCGCCDesign primers
2887344AAGCGCAACCGCAAGCGGAAGCGCDesign primers
2994142ATAAAGAA-GTAAAGAA-GTAAAGAADesign primers

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