Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Beutenbergia cavernae DSM 12333

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
11418	CACCCAGGCTCCCGC-CACCCAGGCTCCCGC-CACTCGGGCGCCCGC	Design primers
25839	GCCGCCGTCGCCGCCGCGGCAGCC	Design primers
49076	TTGTGGTCGGGCCACGAACCTCTCGCGGTGCGGCCACGAACCTCTCGCGGTGCGGCCACGAACCTC	Design primers
54878	CGCGGCGTCGCCCGGCGTCGCTCGGAGTCGCCCGGCGTCA	Design primers
56354	CGGCGTGGGTGCGGGGTGGGTGCGGGGTGAGTG	Design primers
56472	CAGGCTCCGCACCCGGACGCCACGCCCGGCAGCCGGACGCCACGCCCGGCACTCGGACGC	Design primers
95646	TGACGGCGCAGAGATCCTCTCGCGGTGACGCAGAGATCCTCTCGCGGTGACGCAGAGATCCTCTCG	Design primers
98255	GAGCAC-GAGCAC-GAGGAC-GAGCAC-GAGGAC	Design primers
118696	GAGGCGGAGCCGGTGGCGGCGGCG	Design primers
144902	TCGCCG-TCGCCG-TCGTCG-TCTCCG-CCGCCG	Design primers
144956	GCCGCGAGCGTCACCGCGAGCGCCGCCGCGAGCGTC	Design primers
154663	GGTCCGGGCCCGGCTCCGGCTCCG	Design primers
154710	TCCGAGTCGGAGTCCGGGTCCGAT	Design primers
188379	GGCGATCTTCGCGGCGATCGTCGCGACGATGTTCGC	Design primers
208199	CCGCCGACACCGCCGACCCCACCGACA	Design primers
225396	CCACGGGGTCCGCCTCGACCACGGGATCGGTCTCGACCACGGGATCCCCCTCGA	Design primers
230889	GGGTCG-GGGTTG-GGGTTG-GGGTGG	Design primers
236754	GTCGTGGCC-CTCGTGGCC-CTCGTGGCC	Design primers
277568	GAGCCGGCCAGCCGGCGACCCGGC	Design primers
289190	CCGACG-CCGACG-CCCACG-CCGACG	Design primers
308828	GTCCAGGTCCGGCTCCAGGTCGAG	Design primers
316363	GAGGGCGCGGGCGAGGACGACGGCGAGGCC	Design primers
322758	CGACGACGCCGACGACGCGGACGA	Design primers
331945	GTCCCGCGTCCCACGGCGGCTCGCGTCCCACAGCGGCTCGAGTCCCACGGCGGCTCGAGTCCCACGGC	Design primers
332874	CCCACGCCACCCCGCCCCTCACCAC	Design primers
339615	TCTCCCGACGGCGGATCGGACGACGGCGGATCGGACGACGGCGGA	Design primers
339716	CACGGCCG-AACGGCCG-AACGGCCG	Design primers
350995	TCGACGTCCACGTCGACGTCGTCG	Design primers
353131	CCGACGTCGAGCGGGCCGCCGTCGACCTGGCGGACGTCCACCGGG	Design primers
375617	CGCCCGCCGGGGCTCGGGCTCTCGCCGGGGCTGGGGCTCTCGCCGGGGCTGGGG	Design primers
377524	CCTGTC-CCGGTG-CCCGTG-CCGGTG-CCGGTT-CCGGTG	Design primers
377563	GTGCCA-GTCCCG-GTCCCG-GTCCCG-GTGCCG-GTTCCG	Design primers
378417	CGTCGTCCCCCCGGCAGGCGGAGTCCCACCGGCAGGCGGAGTCCCCCCGGCGGG	Design primers
384089	CGTGGTGGTGGTGGTGGTCGTCGT	Design primers
387797	GGGGATGCGAGGGATGCGGGGGATGCG	Design primers
397862	AGACCGACC-ACACCGACC-AGACGGACC-AGACGGACC-AGACGGACC	Design primers
398420	CGGTCGGGCGGTCAGGCGGTCCGG	Design primers
410139	CCGGTTCGCGAGAGGTGAGTGGCCGCACCGCGAGAGGTGTGTGGCCGCACCGCGAGAGGTGTGTGG	Design primers
415829	CGCAGCCACGAACCTCTCGCGG-TGGGGCCACGAACCTCTCGCGG-TGGGGCCACGAGCCTCTCGCGG-AGGGGCCACGAGCCTCTCGCGG-TGGGGCCACGAACCTCTCGCGG	Design primers
429468	CGAGGGCGTCCTCGGCGGCGTCCTGGAGCGCGTCCT	Design primers
431220	CACTCCCGCGCACTCTCGGGCACGCCCGCC	Design primers
438311	GGCGACGACGACGGCGACGGTGAC	Design primers
439991	TCGCGAGAGGTTCTCTGCGCGACCGCGAGAGGTTCTGTGCGTGACCGCGAGAGGATCTGTGCGTGA	Design primers
442429	AAGATCCTCTCGCGAACGCGCAGAGATCCTCTCGCGGTGGCGCAGACTTCCTCTCGCGAACGCGCAGAGATCCTCTCGCGAACGCGCA	Design primers
474778	CTCGGGCCCGGGCTCCGGCTCGGG	Design primers
490487	CAGGCTGGGCGGGAGGTGCGGGCGGGGCGGGGGGTGCGGGCTGGGCTGGGGGTG	Design primers
491539	CGCGCACGCACCGCACTCGCACTCACCGCACCCGCGCGTACCGCA	Design primers
508174	GGGGTGGGGCCACAAACCTCTCGCGGTGGGGCCACGGACCTCTCGCGAAGGGGCCACGAACCTCTCGCGGTCGGGCCACGGACCTCTCGCGGTGGGGCCACGGACCTCTCGCGGTCGGGCCACGAACCTCTCGCGGTGGGGCCACGAACCTCTCGCGAAGGGGCCACGAACCTCTC	Design primers
515101	CGGCGAGCG-CGGCGAGCG-CGACGAGCG	Design primers
515666	CTCGC-CCCGC-CCGGC-CCCGC-CCCGC-CTCGC-CCCGC-CCGGC-CCCGC-CCCGC-CCCGC-CTCGC	Design primers
521176	GGACGAGACCGCGGACCAGACTGCGGACGAGACGGC	Design primers
538750	CGGCGA-CGGCGA-CGGGGA-CGGAGA	Design primers
543869	CTGGTCGTT-CTGGTCGTT-CTGATCGTT-CTGGTCGTC	Design primers
559530	GGGCCTCCAGCT-CCGCCTCCAGCT-CCGCCTCCAGCT	Design primers
569044	CGCCGTCGACCCCGGTGACCCGGGCGACCCCGGTGACCCGGGCGACCCCGGTGA	Design primers
577517	CGCCGTCGTCGTCGCCCTCGCCGA	Design primers
578621	GCGACGAGCCGAGCGCCGAGTCGAGCGCCGAGCCGC	Design primers
634558	CGCCGCCGCCGCCGGCGTCGCCGCCGCCCGCGCCGC	Design primers
658509	GGCAGCGCAGGGCTGGGCGGGGCAG	Design primers
662092	CGCTCGTGCTCGGGCTCGTGCTCG	Design primers
674651	CGAGAGAGGATCCGCGCGCAACCGCGAGAGGTTCCGTGCGCGACCGCGAGAGGATCCGCGCGTCAG	Design primers
677129	GGTCGCAGAGAACCTCTCGCGG-TTGCGCAGAGAACCTCTCGCGG-TTGCGCAGAGATCCTCTCGCGG-TTGCGCAGAGAACCTCTCGCGG-TTGCGCAGAGAACCTCTCGCGG	Design primers
689543	TCG-TGG-TGC-TGG-TGC-TGG-TGC-TGG-TGC-TGG-TGC-TGG-TGC-TGG-TGC-TGG	Design primers
703241	GCGGGCGGGCGCCGGGCGAGCGACGGGCGCGCG	Design primers
705207	CTCGCCCGTCGGTTCGCCGGTCGGCTCGTCCGTCGG	Design primers
705341	CGACGGCGAGGACGGCGACGGCGGCGA	Design primers
741871	CGGACGAGGCGGACGACGCGGACGAGTCGGACCAGG	Design primers
762732	GGATCCTCTCGCGGTGGCGCAG-AAATCCTCTCGCGGTGGCGCAG-AAACCCTCTCGCGGTCGCGCAG	Design primers
783966	CGCCGGGTCCGTACCCGCCGGCTCCGGGTTCGTACCCGCCAGCGCCGGGTCCCGTCCAGCCGGCCTCGGGTCCGTACCCGCCGG	Design primers
813681	ACCTTCGCGAGAGGAAGTCTGC-GCCACCGCGAGAGGAAGTCTGC-GCGACCGCGAGAGGAAGTCTGC-GCGACCGCGAGAGGAAGTCTGC-GCGACCGCGAGAGGAAGTCTGC-GCGACCGCGAGAGGAAGTCTGC-GCCACCGCGAGAGGAAGTCTGC	Design primers
822946	TCGGGT-GCAGGT-GCGGGT-GCGGGT-GCGGGT-GCTGGT	Design primers
827445	AGG-ACG-ACG-ACG-AGG-ACG-ACG-ACG	Design primers
890192	GCCGGT-GCCGGT-GTCGGT-GCCGGT	Design primers
890830	CGTCGTCGGCGTCGTCATCGCCGT	Design primers
906092	GGCTGACGGGCTGACAGGCCGACG	Design primers
920077	CCTGCGCGCAGAGTTCCTCTCG-CGGTGGCGCAGAGTTCCTCTCG-CGGTGGCGCAGAGTTCCTCTCG-CGGTGGCGCAGAGTTCCTCTCG-CGGTGGCGCAGAGTTCCTCTCG-CGGTGGCGCAGAGTTCCTCTCG	Design primers
937826	TCCTGCACCTGCTTCTGCGCCTGC	Design primers
948060	GGC-GAC-GCC-GCC-GAC-GCC-GCC-GAC-GCC	Design primers
948453	CGCGCCGAGCCGGAGCCCGCGCAGGACGCCGAAACGGAGCCCGCGCAGGACGCCGAGCCGGAGCCCGCGCAG	Design primers
951884	TCGGGC-TCGGGC-TGGGGC-TCGGCC	Design primers
969194	GCCGCGGTCGCGGCGGCGACCGCG	Design primers
979829	CGGGGCGGCGCGGGTCGCGGCGGCG	Design primers
980415	CGGCCGCCTCGACCGCCTCCGCCGCCT	Design primers
982683	GCCGGAGCCTGAGCCGGAGCCCGA	Design primers
986269	GCG-GCG-GCG-ACG-GCG-TCG-GCG-TCG	Design primers
989024	CGACGCCGTCGCCGACGCCGTCGC	Design primers
1020474	GCGACG-TCGACG-TCGACG-GAGACG	Design primers
1035807	GCGGC-GCGGT-CCGGC-GCGGC-GGGGC	Design primers
1064828	CCGGAGCCGGAACCGGCGCCGGAC	Design primers
1107479	CGTCGACCTCGACGTCGACGGCGA	Design primers
1108257	GGT-GGC-GGC-GGT-GGT-GGC-GGT-GGC-GGC	Design primers
1122201	TCCGCGGCGGTCAGCGGCCGGCCGCGGGGG	Design primers
1124313	GTCGGCCTCGGCATCGGCGTCGTCGTGGGC	Design primers
1136810	GCGCCCGAGCCGACCCCGACACCCGAGCCGACCCCGACGCCGAAGCCGACCCCG	Design primers
1136926	CCCGGAGCCCACCCCCGAGCCCACGCCGGAGCCGACCCCGGAGCCCACGCCGGAGCCGAC	Design primers
1147165	CGCCGGCCACGTCGGCCACGTCGGCCA	Design primers
1150520	TCGCCGGCGCCGTCGCCGTCGTCG	Design primers
1159396	CCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCGCCT	Design primers
1159433	CGCCTC-CGCCTC-CGCCTC-CGCCTC-CGCCGC-CGCCGC	Design primers
1169457	CGACCTCGCCGACGCCCTCGCGGACCACCTCGCCGA	Design primers
1186045	GCGTGGCCCGCGTGGCCCTCGTGTCCTGCGTGGCCCGCGTGGCCGCCGTGACCC	Design primers
1200150	TCGCGACCGCGAGCGCGATCCCGA	Design primers
1219027	GACGACGCCGAGCGGGACGACGCTGACCCGGGCAACGCCGAGCCG	Design primers
1277494	ACGTCGCCGTCGACGTCTACGTGG	Design primers
1277552	GGGCTGAGGCGCACGGATCCTC-TCGCGGTGGCGCACGGATCCTC-TCGCGGTGGCGCACGGATCCTC-TCGCGGTGGCGCACGGATCCTC-TCGCGGTGGCGCACGGATCCTC	Design primers
1289091	CCCTCCGCGAGAGGATCTGTGCGCGACCGCGAGAGGGTCTGTGCGCGACCGCGAGAGGGTCTGTGCGCGACCGCGAGAGGATCCGTGC	Design primers
1293097	ACGGCTCGCGGTGGCGCAGGGA-ACCTCTCGCGGTCGCGCAAGGA-ACCTCTCGCGGTGGCGCACAGA-ACCTCTCGCGGTGGCGCACAGA-ACCTCTCGCGGTGGCGCACAGA-ACCTCTCGCGGTGGCGCACAGA	Design primers
1305447	CCCGCCCCCGCGCCGGACCCTGCGCCCGCCCCGGCGCCTGCCCCCGCGCCCGCCCCGGCGCCGGACCCGGCA	Design primers
1316078	GCG-GCG-TCG-GCG-TCG-GCG-GCG-TCG	Design primers
1330645	GGCCGT-GGCCGT-AGCCGT-GGCCGT	Design primers
1336660	TCGTCGTCGCCGTGGTCGTCGTCG	Design primers
1337601	CCGTCAGC-TCGTCAGC-TCGTCAGC	Design primers
1364856	CCGTGAACGGGACCGCGAACGGGACGGCGAACGGGA	Design primers
1368734	TGGCCGTGGCTGTGGCCGTGGCGG	Design primers
1391035	ATCGCT-GTCGCT-GTCGCT-GTCGCT	Design primers
1433048	CGCGCAGCGCCGAGCCGCGTCGGGC	Design primers
1448216	AGGAGCCGGCGCCTCGGGGGCCGGCGCCTCGGGGGCCGGCGCCGCGGGGGCCGGCGCCGC	Design primers
1454348	CGAGGAGCCGTCGGAGGAGCCGACCGACGAGCCGCC	Design primers
1457923	TCCGCC-TCCGCC-GCCGCC-TACGCC	Design primers
1460566	CGGCGAGCGGCGTGCGGCGAGCGTCGAG	Design primers
1460680	CCGCGACCGCTACCGCGACCGCAA	Design primers
1465659	GCCGCCGACGAGCCCGCAGACGTCGAGCCCGCCACCGACGAGGCC	Design primers
1528197	CGGGGCTGGGCAGGGCCGGGCGGGGCGAGG	Design primers
1567093	GCGACGGCGGCGGGGACGGCGATG	Design primers
1586321	CCCGAGCCGCTCGAGCCGCCCGAGTCG	Design primers
1594040	GTCGCC-GTCGCC-GTCGTC-ATCGCC	Design primers
1596382	CGCCGACCCGTCGCGAGAGGTTCGTGGCCCCCTCGCGAGAGGTTCGTGGCCCCCTCGCGAGAGGTT	Design primers
1597054	GCGTCGCGACGCGACGCGCCGCCTC	Design primers
1605122	GTGGGTGTGGTTGTTGGTGTGTGT	Design primers
1643971	GGGCCGGGACCGGGGCCCGGACCG	Design primers
1645360	CGCCGTAGCCGCCGCTGGGGGCCTGGCCGTAGCCGCCGCTGGGCGCCTGGCCATAGCCGCCGCTGGCGGACTGCCCGTAGCCGCCGCTGGGCGCCTGGCCGTAGCCGCCGCTCGCGGACT	Design primers
1653866	TCGACCTCGTCCTCGACGGCGACC	Design primers
1675265	CG-AG-GG-CG-AG-CG-CG-AG-GG-GG-AG-GG	Design primers
1700188	CATCGGCATGGGCAGCGGCAGCGG	Design primers
1736113	GACGTCGACGGCGACGACGCCGTC	Design primers
1755834	GGCGGCGGGTCGGGAGGCGGCTCGGGAGGCGGCTCG	Design primers
1779602	GCAGGTCGG-CCAGGTCGG-CCAGGTCGG	Design primers
1789581	CGAGGACGAGCAGGAGGACGGGGA	Design primers
1796648	CCACCCTTCGCGAGAGGTTCGTGGCCCGTTCGCGAGAGGTTCGTGGCCCGTTCGCGAGAGGTTCGT	Design primers
1827758	ACGACCTCGACCACCACCACGTCC	Design primers
1857688	CGGCGGCGCCGGCGTCGGCGGCGC	Design primers
1859525	GCGCTC-GCGATC-GCGATC-GCGCTC	Design primers
1881385	ACGACGACGATGACGACGTCGACGACGACG	Design primers
1889432	CCGGACCCAGACCCGGATCCGGAT	Design primers
1890327	ACGTCGCCGTCGACGGCGACGTGG	Design primers
1911444	TCGGCGCGGCGGCGCGGCGGCGCG	Design primers
1911655	CCTTCGCGAGAGGATCTGTGCGCGACCGCGAGAGGATCTGTGCGCGACCGCGAGAGGATCTTTGCG	Design primers
1925099	CCG-CCG-CCG-CGG-CCG-CCG-CGG-CCG	Design primers
1939131	CCACTTCGCGAGAGGTTTTCTG-CGCCACCGCGAGAGGTTTTCTG-CGCCACCGCGAGAGGTTTTCTG-CGCCACCGCGAGAGGTTTTCTG	Design primers
1940264	TGGCGCGCACGGATCCTCTCGCGGTGGCGCACGGATCCTCTCGCGGTGGCGCACAGATCCTCTCGC	Design primers
1954249	TCGGGCTCGCGCTCGAGCTCGTGC	Design primers
1974614	GAGTCCGTCCGCGAGAGGTTCGTGGCCCGTCCGCGAGAGGTTCGTGGCCCGGCCGCGAGAGGTTCG	Design primers
1986744	GCC-GTC-GCC-GTG-GTC-GTC-GTC-GTC	Design primers
1991987	TACGCGAGAGGCTCGTGGCCCTTTGGCGAGAGGCCTGTGGCCCTTTGGCGAGAGGCTCGTGGCCCT	Design primers
1993104	CACGGCTCTCGCGAAGGGGCCACGGACCTCTCGCGAAGGGGCCACGGACCTCTCGCGAAGGGGCCA	Design primers
1994937	GCTCGAGCGCGAGTTCGACCTCGA	Design primers
2009023	CCGAGCCCGAGGTCGAGCCGGAGCCCGAGGCCGAACCGGAGCCGGAGCCGGAGCCGGAGCCCGAGA	Design primers
2009094	CCGGAG-CCGGAG-TCGGAG-CCGGAG-CCCGAG	Design primers
2009205	GTGCCG-GAGCCG-GAGCCG-GAGCCG	Design primers
2009244	GAGCCCGAGACCGAGCCGGAGCCC	Design primers
2043224	CGTCGACGCCGACGGCGACGTCGA	Design primers
2075488	GCCGGACCTGCCCGACCTGCCGGATCT	Design primers
2076153	CCGGCGCCGGAGCCGGCCGCGGCG	Design primers
2093655	CGCCGCGTCGCGCGGCTCCGCGCGG	Design primers
2106520	CCTGCGCTCGCTGGCGCTCGCTGGCGCTCG	Design primers
2109807	GACGCCGAGGCCGACGCCGACGGC	Design primers
2176672	GTCGTCGGCGTCGGCGTCGTCGGC	Design primers
2187217	ACGCCGTCGCCGTCGCCGACGACG	Design primers
2223308	CATCCCCGAGAGGAAGTCTGCGTCACCGCGAGAGGAAGTCTGCGTCACCGCGAGAGGAAGTCTGCG	Design primers
2252218	CGTCGCCGTCGACGACGCCGTCGT	Design primers
2252563	GCGTGCGCCGGGGTGCGCCCGGCTGCGCCG	Design primers
2254924	GCGCCGCG-CCGCCGCG-CCGCCGCG	Design primers
2270489	CGCCGCCCCGCGCGGCGCCTCGACG	Design primers
2273232	GATCCGACGGCGGATCCCACCGCGGATCCGACGGCA	Design primers
2280978	GGGCCTCGGGCTCGC-CGGCGTCGGTCTCGC-TGGCCTCGGGCTCAG-CGGCCTCGGGCTCAG-CGGCCTCGGGCTCAG-CGGCCTCGGGCTCGG	Design primers
2281069	GACAGCCTCGGGCTC-AGCGGCCTCGGGCTC-AGCGGCCTCGGGCTC-AGCGGCCTCGGGCTC	Design primers
2310254	CGATCGCGGCGAGCGCGGCGAGCGCGG	Design primers
2361322	CGCCCGGCGCAGCCCGGTGCCGACCGGCAC	Design primers
2396238	GGTCGAGCTCGATGTCGAGCTCGA	Design primers
2427083	TGCGCCTGGCGCCTCGGCGGCTGGCGCCTCTGCGGCCGGCGTCTC	Design primers
2485285	CCGCCGCCGTCGCCACCGCCGCCG	Design primers
2505067	CCGACGGCGAGCACGACGACCGCGAGCCCGGCGGCGGCGAGGACG	Design primers
2528117	CGTCGCCGTCACCGGCGCCGTCGG	Design primers
2528676	GGCGTCGACGCCGTCGACGGCGACGAC	Design primers
2531559	GTC-GTC-GTC-GTC-CTC-GTC-CTC-GTC	Design primers
2531586	GTC-GTC-GTC-CTC-GTC-GTC-GTC-CTC	Design primers
2539748	CCGCCGCCGCCCGCGCCGCCGTCG	Design primers
2558282	GCGCG-GCTCG-GCTCG-GCGCG-GCTCG	Design primers
2577629	TCGGCGTCGACGTCGACGTCGGCC	Design primers
2584553	CACGACGACGACCATGACGACGAC	Design primers
2588696	CCCCTTCGCGAGAGGATCTGTGCGCCACCGCGAGAGGTTCTGTGCGCCACCGCGAGAGGTTCTGTGCGCCACCGCGAGAGGATCTCTG	Design primers
2597773	AGGACGGGGACGACGACGAGGAGG	Design primers
2615517	CGTTGCCATGGGCGGCGAGGCCGTGGGCGGCGAGGCCGTGGGCGG	Design primers
2628125	TGACGACTCCGCGAGAGGTTCGTGGCCCCACCGCGAGAGGTTCGTGGCCCCACCGCGAGAGGTTCG	Design primers
2658573	GAGCGCCAGCGCGAGCTCGAGCAC	Design primers
2668936	GCCGCGCAGCGCGGCGTCGCCCCGC	Design primers
2670589	TCGCGAGAGAATGGTGGCGCCT-CCGCGAGAGGTTCGTGGCGCCT-CCGCGAGAGGCTCGTGGCGCCT-CCGCGAGAGGCTCGTGGCGCCT-CCGCGAGAGGCTCGTGGCGCCT-CCGCGAGAGGCTCGTGGCGCCT-CCGCGAGAGGCTCGTGGCGCCT-CCGCGAGAGGCTCGTGGCGCCT	Design primers
2670778	CGGCGCGAACTTCCTCTCGCGAACGCACCAACTTCCTCTCGCGAACGCACCAACTTCCTCTCGCGA	Design primers
2687728	GCTCGTGCGCGTGCTCGTCCTCGT	Design primers
2691176	CGGCTCGGGCTCGGGCTCCGGCGC	Design primers
2692260	GGCGTACTCGTCGTACTCCGCGTACTC	Design primers
2699691	CGGGCG-AGGGCG-CGGGCG-CGGGCG	Design primers
2711529	CGG-CGC-CGC-CGC-CGG-CGT-CGT-CGC	Design primers
2734489	CCGGCGACGAGGAGACGGGCGGGGAGGAGACCGGCGGCGAGGAGA	Design primers
2743654	CGACGG-CGATGG-CGATGG-CGATGG	Design primers
2794396	GCGCCCGCGACCGCGCTCGTGCCC	Design primers
2798229	GATCCTCGC-GATCCTCGC-GCTCCTCGC	Design primers
2800895	CTCAGCCTCAACCTCCGCCTCGGC	Design primers
2800931	CTCAGCCTCAACCTCCGCCTCGGCCTCGGC	Design primers
2857039	TCGGTGGTGCCGGTGGTGTCGGAGGTG	Design primers
2913613	GCCGACGCCGAGGCGGACGCCGTCGCCGGC	Design primers
2919193	AGGTCGAGCTCGACGTCGAGGCCG	Design primers
2932358	CGCCGTCGACGTCGCCGTCGCCGT	Design primers
2942231	CCTCCGCGTCCGCCGCCGGCTCCG	Design primers
2968168	ATCGCGATCCCGCTCGCGCTCGCG	Design primers
2972779	CACGAGGATCGTCACGAGGATGATCACGACGAGCGT	Design primers
2982681	CGGCGCGCGGCGGCGAGCGTCGGCACGCAG	Design primers
2985146	CGTCGGGTCGGGTCGGGTCGGGTCGCGTCA	Design primers
2997083	GGCGC-CGCGC-CGCGC-GCCGC-GGCGC	Design primers
3044681	ACGTCCTCGGCGTCCTCGTCGTCCTCG	Design primers
3110959	CGAGCCCGATCCCGAGGCCGAGGC	Design primers
3141761	CGATCTCGACCTCGAGCTCGACCTCGAGCT	Design primers
3161782	CCGACGACGACGCTGACGCCGACA	Design primers
3165177	CCTCCG-CCTCCG-CCCCCG-CCTCCG	Design primers
3167109	CCAGGTCGTCCGGGTCGTCCAGGGCGT	Design primers
3219247	GTCGGTCGGTTCCTCGGTCGGCTCGTCCGTCGGCTCCTCGGTCGGCTCCTCCGTCGGTTC	Design primers
3221961	CGACGATGACGACGCCGAGGACGA	Design primers
3227057	AGTCCGACGGCGAGTCCGAGGACGTGGCCGACGGCG	Design primers
3248515	GCGCGGTGGCCGGGACGGCGAGCGGCGCGGCCGGGACGGCGAGCGGCGCGGCCGCGACGGCGA	Design primers
3259517	CTTCGGCTTGGGTTTCGGCTTCGG	Design primers
3261082	CGGGCCGGA-CGGGCCGGA-CGGGCCACC-CGGGCCGGA-CGGGCCGGA-CGGGCCGGA-CGGGCCGGA-CGGGCCGGA	Design primers
3261294	CCGGTCCGACGGGCGGCTCGACCGGCGCGGCGGGTGGCTCGACCGGCGCGGCAGGCGGCTCGA	Design primers
3261426	CCTCGGAAGCCTCCCCCTCGGAAGCCTCGCCCTCGGACGTCTCGC	Design primers
3295863	GCCCCTTCGCGAGAGGATTTCTGCGCCACCGCGAGAGGATTTCTGCGCCACCGCGAGAGGTTTTCT	Design primers
3300727	GGCCACGCTGGGCCGCCCTGGGCCGCCCTG	Design primers
3300806	CGCCGGGCCGCCGGGTCGGCGGGC	Design primers
3306433	CCGAGGGCGACGGCGAGGGGGACGGCGAGGGCGAGG	Design primers
3310766	TCGCCGTCGACGTCGTCGTCGCGG	Design primers
3363867	CGGCGACGACGACGCCGAGGGCGA	Design primers
3369643	GTCGGCGGCGGCGTCGCCGTCGGG	Design primers
3369800	CGCGG-GGCGG-GGCGG-CGCGA-GGCGG	Design primers
3380690	GGTGATGATGCCGGCGATGATGCTCGTGATGATCCC	Design primers
3381519	GGGCGACGGCGAGGGGACGGCGAGGCGACGGCGAGGCGACGGCG	Design primers
3385116	CGACCCCCGCGCCCCCCGCGGCCCCCG	Design primers
3385851	CGAACGAGGCGAACGAGCTGAACGAGG	Design primers
3386945	CGGCGCCGGCGTCGGGGCCGTCGC	Design primers
3408452	GATCGCCGCCGCGCTGGCCGCCGCGATCGCCGACGG	Design primers
3436617	ACCCGGGCA-CCCCGGGCA-CCCCGGGCA	Design primers
3436645	CCCGGACAC-CCCGGACAC-CCCGGACAC-CCCGGACAC	Design primers
3436750	CCCGGAGGC-CCCGGAGGC-CCCGGCGGC	Design primers
3442430	CGCCCTCCTCGCCCTGCTCGCCCTCCG	Design primers
3487005	GTCACCGCCCCGGCGGTCGCCGCCGCGGCGGTCCCCACCCCGACG	Design primers
3518038	GGGCTCGTCGGAGGT-GGGCTCGTCGGAGGT-GGGCTCGGCCGGGGT	Design primers
3519036	CGTCGCCGCCGCTGTCGCCGCCGC	Design primers
3520312	CCGACG-CCGACG-CCCACG-CCGTCG-ACGACG-CCGACG	Design primers
3536663	GGGCGAGGCGCGGCGGGTCGGGGTG	Design primers
3560055	CCCGGAGCCCCCGGCGGACCGGGCGGCCCCGGCGGACCCGGCATCCCCGGCGGA	Design primers
3569965	CGCGAAGGCGCACAGAACCTCTCGCGGTGCCGCACACAACCTCTCGCGGTGACACACAGAACCTCT	Design primers
3575994	CGGCGGCGGCAGCGGAGGCGGCGA	Design primers
3577037	ACGAGCATGAGCACGAACACGAAC	Design primers
3605781	CGCGGGCCGGCCGCG-ACCGGGCCGGCCGCG-ACCGGGCCGGACGCG	Design primers
3634830	GACTGGGCCGACTGGGCGGACCGGGCC	Design primers
3636136	CATCGCCGTCGCCCTCGCCGTCGC	Design primers
3652596	GCGGCGCGGCCGGGCGAGGCGCAGGCGGGCGAGGCGCAGGCGGGC	Design primers
3652646	CGCCGACGAGGCGCAGACCGACGAGGCGCGGGCGGGCGAGGCGCA	Design primers
3667714	CGTCGCCGTCACCGTCACCGACGC	Design primers
3683231	AAACCTCTCGCGGTGGCGCAGAAACCCTCTCGCGGTGACGCCAACTTCCTCTCGCGGTTGCGCAGAAAACCTCTCGCGGTGGCGCAGACTTCCTCTCGCGGTGGCGCAGA	Design primers
3694948	AGCACGAGC-AGCACGAGC-AGCACGAAC	Design primers
3706734	CGGAGG-CGGAGG-CGGTGG-CGGCGG	Design primers
3735354	ACG-ACG-AGG-ACG-AGG-ACG-AGG-ACG	Design primers
3737667	CACCTTCGCGAGAGGCTCGTGGCCCCACCGCGAGAGGTTCGTGGCGCCACCGCGAGAGGTTCGTGG	Design primers
3744015	TGCTCGGCGTGCTCGGTGTGCTGGGCG	Design primers
3745648	CGAACC-CGAACC-CGATCC-CGAACC-CGACCC	Design primers
3752140	CGCGAGCACGAGCACGAGCGGGAG	Design primers
3760794	GCTCACCCGCTCACTCGCTCACCC	Design primers
3766756	TCG-CCG-CCG-CCG-GCG-CCG-TCG-GCG	Design primers
3773930	CTCCGGCGGCTCCGGCGACTCCGGGGG	Design primers
3803242	CGCTCGCGCTGGCGCTCGCGCTCC	Design primers
3832966	CGCCGGCCCGCGGCCGGTCCGCCGTCGGTCCGC	Design primers
3888858	CCCCTTCGCGAGAGGATCCGTG-CGCCACCGCGAGAGGATCCGTG-CGCCACCCCGAGAGGATCCGTG-CGCCACCGCGAGAGGATCCGTG	Design primers
3890040	ACCGCAGAGATCCTCTCGCGGTCGCGCAGAGATCCTCTCGCTGTCGCGCACAGAACCTCTCGCGGTCGCGCAGAGAACCTCTCGCGGTGGCGCAGAGATCCTCTCGCGGT	Design primers
3912915	GCCGCACGAATCCTCTCGCGGTCGCGCACGGAACCTCTCGCGGTCGCGCACGGAACCTCTCGCGGTCGCGCACGAATCCTCTCGCGAA	Design primers
3926515	GCGGCGGCGGGGGCCGCGGCGTCG	Design primers
3932943	CGCCGACGTCGATGCCGACGGCGA	Design primers
3935814	CCCGCCGGGCCCGCGGGGACCGCCGGG	Design primers
3938869	CGCCGGGCCGCGCCGCGCCGCGTCG	Design primers
3944802	CCCCGG-GACCGG-GACCGG-GACCGG-GACCGG-GACCGG	Design primers
3945394	CCGAGCGGCCGGGCCTGACCGGGCGGCCGGGCCCGAGCGGGCGGCCGGGCCTTA	Design primers
3952906	CGCCGCGGCCGCCGACGCCGTCGC	Design primers
3957429	CGG-GGG-CGC-GGG-CGG-CGG-CGC-GGG-CGG-CGG-CGG-GGG	Design primers
3966373	CGACGGCGAAGGCGACGGCGACGC	Design primers
4003229	CGTCCGCGAGAGGATCTCTGCGCCACCGCGAGAGGATCTCTGCGCCACCGCGAGAGGAAGTCTGCGCCACCGCGAGAGGAAATCTGCG	Design primers
4033598	CGC-CAC-CGC-CGC-CCC-CGC-CGC-CCC-CGC	Design primers
4038019	CCGCCGACGCCGTCGACGCCGCCCACG	Design primers
4040249	AGGCGCAGGCACAGGCGACGGCGCTGGCGC	Design primers
4046769	CC-GG-GT-CT-GG-CG-CG-GG-CG-CG-GG-GT-CT-GG-TG-CG-GG-CG-CC-GG-GG-CG-GG-TG-CG-GG-CG	Design primers
4057172	CGCATCCGCTCACCCCTGGGGCGGCCGCTCACCCCTGGGGCGGCCGCTCACCCCTGG	Design primers
4090202	TCGTGTTCGCGTTCGCGTTCGTGC	Design primers
4098542	GCGCG-GCGCA-GCTCG-GCTCG-ACGCG	Design primers
4099395	CGGCGGTGGGCTCCTGCGTCGGCTCGGCGGTCGGCGACGGCGTCGGCTCGCCGGTGGGCTCCTGCGTCGGCC	Design primers
4101150	CGGCCGGCG-CGGCGAGAG-CGGCGAGAG-CGGCGAGAG-CGGCGAGAG-CGGCGAGAG	Design primers
4101407	CCCGTTGC-CTCGATGC-CTCGGTGC-CTCGGTGC-CTCGGTGC-CTCGGTGC	Design primers
4134688	GTCGACGTGGACATCGACGTCGAG	Design primers
4159640	CCGCTCAGGTCGGCGCCGCGCAGGTCGGTGTCCCGCAGGTCGGCG	Design primers
4198608	TGGCCG-AGGCCG-GGGCCG-GGGCCG	Design primers
4198827	GGCGAGAGCGAGGACGAGGGCGAT	Design primers
4217118	CCGGACGATCCGACCGACCCGGTGGACCCGACCGACCCCGTCGACCCGACCGAC	Design primers
4283795	GGCCCGGGCC-GGCCCGGGCC-GGCCCGGCAC	Design primers
4288481	GGCCGTCGAGCAGAAAACCTCTCGCTGTCGCGCAGAAAACCTCTCGCGGTGGCGCAGAAAACCTCTCGCGGTGGCGCAGAAAACCTCT	Design primers
4311552	CG-CG-AG-CC-CG-AG-CG-CG-TG-CG-CG-AG	Design primers
4341285	CTCTCGCGATAGCGCAGAAATCCTCTCGCGGTCGCGCAGAGAACCTCTCGCGGTCGCGCAGAGAAC	Design primers
4351460	TCCTCG-CCCTCG-CCCTCG-ACCTCG	Design primers
4354870	CGACGTCGTCGTCGAAGTCGTCGT	Design primers
4354925	GTCGTCGAACTGGTCGTCGATGTGGTCGCCGAACGG	Design primers
4374544	GGCGATCGCGATCGCGATGGCGAG	Design primers
4383049	AGCAGCAACAGCAGCAGGAGGAGC	Design primers
4383120	TCCTCCGACCCGTCGTCCGATCCGTCGTCGGACCCG	Design primers
4383233	GTCGCC-GTCGCC-GTCCCC-GTCACC	Design primers
4387462	GCCTCG-GCCTCG-GCGTCG-ACCTCG	Design primers
4393083	CCCCGCCCGTCGCGGGCCGGGCGCCCCCGCCGTCGCGGGCCGGGCGCCCCCGCCGTCGCGGGCCAGGAG	Design primers
4401900	CCGACCCCGTCCGCGAGAGGAT-CCCTGCGCGTCCGCGAGAGGAT-CCCTGCGCGTCCGCGAGAGGAT-CCCTGCGCGTCCGCGAGAGGAT	Design primers
4410816	CCGCGT-CGGCGT-CGGCGT-CGGCGT-CGGCGT	Design primers
4435258	GGGCGCGGCGCCGGGCCGGGCGCCGGGCCGGGCGCCGAGCGCCGCGCC	Design primers
4439019	CGCCCG-CACCCG-CACCCG-CACCCG	Design primers
4439049	CGCCCG-CACCCG-CACCCG-CACCCG-CACCCG	Design primers
4439173	CGAGCC-CCAGCC-CCAGCC-CGAGCC-CGAGCC-CCAGCC-CGAGCC-CGAGCC	Design primers
4459958	CGTCACGGTCACCGTCGCCGTCAT	Design primers
4483818	GCCGC-CGCGG-CGCCG-CGCCG-CGGC	Design primers
4519619	GAACAG-CAACAG-CAACAG-CAACAG	Design primers
4519652	CAACAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGGAACAG	Design primers
4521675	GGCGTGA-GTCGTGA-GGCGTCA-GGCGTGA-GGCGTGA-GGCGTCA	Design primers
4542622	CGGCGTCGGGGTCGGGGTCGGCGC	Design primers
4549224	CGCCACAGCCACCGCCTCCGCCGC	Design primers
4549292	CCGCCGGCGCCGCTGCCGCCGGCG	Design primers
4559782	GCTGCC-GGCGCC-GGTGCC-GGTGCC-GGTGCC-GGTGTC-GGTGCC-CGTGCC-GGTGCC	Design primers
4608610	GGATCCTCGGTGGGATCTTCCGTGGGTTCCTCGGTC	Design primers
4642113	CCGCCCGACTCAGCGGCACCCCCCGACTCGGCGACACCTCCCGACTCAGCGGAGCCGCCCCACTCGGCGGCG	Design primers
4651584	ACCCGCCCGCACCCGACCGCGCCGGCCCGC	Design primers
4660954	AGCACCGCGCACCGAGCACCGAGCACCGAGCACCC	Design primers
4661573	GCACCC-GCAGCC-GCACCC-GCACCC-ACACCC-ACACCC-GCACCC-GCACCC	Design primers
4661622	CCGGCA-CCGGCA-CCGGCA-CCGGCA-CCGGCA-CCGGCA-CCGGCA-CCGGCA-CCGGCC	Design primers
4664702	CCGGGAGCAGCGGGAGCACCGCGAGCAGCGGGAGCA	Design primers
4664739	CCGGGAGCA-GCGGGAGCA-GCGGGAGCA-GCGGGAGCA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

11418

CACCCAGGCTCCCGC-CACCCAGGCTCCCGC-CACTCGGGCGCCCGC