Microsatellites /Tandem Repeats database

Genome: Beutenbergia cavernae DSM 12333

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
49080GGTCGGGCCACGAACCTCTCGCGGTGCGGCCACGAACCTCTCGCGGTGCGGCCACGAACCTCTCGCDesign primers
54880CGGCGTCGCCCGGCGTCGCTCGGAGTCGCCDesign primers
56358GTGGGTGCGGG-GTGGGTGCGGG-GTGAGTGCGGGDesign primers
236755TCGTGGCCC-TCGTGGCCC-TCGTGGCCCDesign primers
331949CGCGTCCCACGGCGGCTCGCGTCCCACAGCGGCTCGAGTCCCACGGCGGCTDesign primers
397876GACCAGACG-GACCAGACG-GACCAGACGDesign primers
410144TCGCGAGAGGTGAGTGGCCGCACCGCGAGAGGTGTGTGGCCGCACCGCGAGAGGTGTGTGGCCGCADesign primers
415833GCCACGAACCTCTCGCGGTGGG-GCCACGAACCTCTCGCGGTGGG-GCCACGAGCCTCTCGCGGAGGG-GCCACGAGCCTCTCGCGGTGGG-GCCACGAACCTCTCGCGGATGGDesign primers
440006TGCGCGACCGCGAGAGGTTCTGTGCGTGACCGCGAGAGGATCTGTGCGTGACCGCGAGAGGTTCTTDesign primers
508223GGGGCCACGAACCTCTCGCGGTCGGGCCACGGACCTCTCGCGGTGGGGCCACGGACCTCTCGCGGTCGGGCCACGAACCTCTCGCGGTGGGGCCACGAACCTCTCGCGAAGGGGCCACGAACCTCTCGCGAADesign primers
515668CGCCCCGCCCGGCCCCGCCCCGCCTCGCCCCGCCCGGCCCCGCCCCGCCCCGCCTCGCCCDesign primers
559531GGCCTCCAGCTC-CGCCTCCAGCTC-CGCCTCCAGCTCDesign primers
569048GTCGACCCCGGTGACCCGGGCGACCCCGGTGACCCGGGCGACCCCGGTGACCCGDesign primers
677131TCGCAGAGAACCTCTCGCGGTT-GCGCAGAGAACCTCTCGCGGTT-GCGCAGAGATCCTCTCGCGGTT-GCGCAGAGAACCTCTCGCGGTTDesign primers
689545GTG-GTG-CTG-GTG-CTG-GTG-CTG-GTG-CTG-GTG-CTG-GTGDesign primers
762734ATCCTCTCGCGGTGGCGCAGAA-ATCCTCTCGCGGTGGCGCAGAA-ACCCTCTCGCGGTCGCGCAGAADesign primers
813685TCGCGAGAGGAAGTCTGCGCCA-CCGCGAGAGGAAGTCTGCGCGA-CCGCGAGAGGAAGTCTGCGCGA-CCGCGAGAGGAAGTCTGCGCGA-CCGCGAGAGGAAGTCTGCGCGA-CCGCGAGAGGAAGTCTGCGCCA-CCGCGAGAGGAAGTCTGCGGCADesign primers
822947CGGGTGCAGGTGCGGGTGCGGGTGCGGGTGCTGGTGDesign primers
920080GCGCGCAGAGTTCCTCTCGCGG-TGGCGCAGAGTTCCTCTCGCGG-TGGCGCAGAGTTCCTCTCGCGG-TGGCGCAGAGTTCCTCTCGCGG-TGGCGCAGAGTTCCTCTCGCGG-TGGCGCAGAGTTCCTCTCGCGGDesign primers
948062CGACGCCGC-CGACGCCGC-CGACGCCGCDesign primers
948455CGCCGAGCCGGAGCCCGCGCAGGACGCCGAAACGGAGCCCGCGCAGGACGCCGAGCCGGAGCCCGCGCAGGADesign primers
1147168CGGCCACGT-CGGCCACGT-CGGCCACGTDesign primers
1159397CTCCGC-CTCCGC-CTCCGC-CTCCGC-CTCCGCDesign primers
1159428GCCTCC-GCCTCC-GCCTCC-GCCTCC-GCCTCCDesign primers
1277554GCTGAGGCGCACGGATCCTCTC-GCGGTGGCGCACGGATCCTCTC-GCGGTGGCGCACGGATCCTCTC-GCGGTGGCGCACGGATCCTCTC-GCGGTGGCGCACGGATCCTCTCDesign primers
1289094TCCGCGAGAGGATCTGTGCGCGACCGCGAGAGGGTCTGTGCGCGACCGCGAGAGGGTCTGTGCGCGACCGCGAGAGGATCCGTGCGCGDesign primers
1293101CTCGCGGTGGCGCAGGGAACCT-CTCGCGGTCGCGCAAGGAACCT-CTCGCGGTGGCGCACAGAACCT-CTCGCGGTGGCGCACAGAACCT-CTCGCGGTGGCGCACAGAACCT-CTCGCGGTGGCGCACAGAACCTDesign primers
1305500CCCGGCGCCGGACCCGGCACCGGACCCGGCGCCGGCDesign primers
1448220GCCGGCGCCTCGGGG-GCCGGCGCCTCGGGG-GCCGGCGCCGCGGGG-GCCGGCGCCGCGGGGDesign primers
1596386GACCCGTCGCGAGAGGTTCGTGGCCCCCTCGCGAGAGGTTCGTGGCCCCCTCGCGAGAGGTTCGTGDesign primers
1779603CAGGTCGGC-CAGGTCGGC-CAGGTCGGCDesign primers
1796650ACCCTTCGCGAGAGGTTCGTGGCCCGTTCGCGAGAGGTTCGTGGCCCGTTCGCGAGAGGTTCGTGGDesign primers
1911445CGGCGCGG-CGGCGCGG-CGGCGCGGDesign primers
1939134CTTCGCGAGAGGTTTTCTGCGC-CACCGCGAGAGGTTTTCTGCGC-CACCGCGAGAGGTTTTCTGCGC-CACCGCGAGAGGTTTTCTGCGCDesign primers
1974616GTCCGTCCGCGAGAGGTTCGTGGCCCGTCCGCGAGAGGTTCGTGGCCCGGCCGCGAGAGGTTCGTGDesign primers
1991990GCGAGAGGCTCGTGGCCCTTTGGCGAGAGGCCTGTGGCCCTTTGGCGAGAGGCTCGTGGCCCTTTGDesign primers
1993107GGCTCTCGCGAAGGGGCCACGG-ACCTCTCGCGAAGGGGCCACGG-ACCTCTCGCGAAGGGGCCACGGDesign primers
2009058CCGGAG-CCGGAG-CCGGAG-CCGGAGDesign primers
2009207GCCGGA-GCCGGA-GCCGGA-GCCGGADesign primers
2106522TGCGCTCGCT-GGCGCTCGCT-GGCGCTCGCTDesign primers
2223310TCCCCGAGAGGAAGTCTGCGTCACCGCGAGAGGAAGTCTGCGTCACCGCGAGAGGAAGTCTGCGTCDesign primers
2254925CGCCGCGC-CGCCGCGC-CGCCGCGCDesign primers
2281008TGGCCTCGGGCTCAG-CGGCCTCGGGCTCAG-CGGCCTCGGGCTCAGDesign primers
2281071CAGCCTCGGGCTCAGCGGCCTCGGGCTCAGCGGCCTCGGGCTCAGDesign primers
2588701TCGCGAGAGGATCTGTGCGCCACCGCGAGAGGTTCTGTGCGCCACCGCGAGAGGTTCTGTGCGCCADesign primers
2615521GCCATGGGCGGCGAGGCCGTGGGCGGCGAGGCCGTGGGCGGCGAGDesign primers
2628130ACTCCGCGAGAGGTTCGTGGCCCCACCGCGAGAGGTTCGTGGCCCCACCGCGAGAGGTTCGTGGCCDesign primers
2670599ATGGTGGCGCCTCCGCGAGAGG-TTCGTGGCGCCTCCGCGAGAGG-CTCGTGGCGCCTCCGCGAGAGG-CTCGTGGCGCCTCCGCGAGAGG-CTCGTGGCGCCTCCGCGAGAGG-CTCGTGGCGCCTCCGCGAGAGG-CTCGTGGCGCCTCCGCGAGAGGDesign primers
2670780GCGCGAACTTCCTCTCGCGAACGCACCAACTTCCTCTCGCGAACGCACCAACTTCCTCTCGCGAACDesign primers
3261108CCGGGCCGG-ACGGGCCGG-ACGGGCCGG-ACGGGCCGG-ACGGGCCGG-ACGGGCCGGDesign primers
3261300CGACGGGCGGCTCGACCGGCGCGGCGGGTGGCTCGACCGGCGCGGCAGGCGGCTCGACCGGCGDesign primers
3295870CGCGAGAGGATTTCTGCGCCAC-CGCGAGAGGATTTCTGCGCCAC-CGCGAGAGGTTTTCTGCGCCGCDesign primers
3300732CGCTGGGCCGCCCTGGGCCGCCCTGGGCCGDesign primers
3306434CGAGGGCGACGGCGAGGGGGACGGCGAGGGCGAGGGDesign primers
3381520GGCGACGGCGAGGGGACGGCGAGGCGACGGCGAGGCGACGGCGADesign primers
3436618CCCGGGCAC-CCCGGGCAC-CCCGGGCACDesign primers
3436646CCGGACACC-CCGGACACC-CCGGACACC-CCGGACACCDesign primers
3888863TCGCGAGAGGATCCGTGCGCCA-CCGCGAGAGGATCCGTGCGCCA-CCCCGAGAGGATCCGTGCGCCA-CCGCGAGAGGATCCGTGCGCCADesign primers
3890042CGCAGAGATCCTCTCGCGGTCGCGCAGAGATCCTCTCGCTGTCGCGCACAGAACCTCTCGCGGTCGCGCAGAGAACCTCTCGCGGTGGCGCAGAGATCCTCTCGCGGTGGDesign primers
3912917CGCACGAATCCTCTCGCGGTCGCGCACGGAACCTCTCGCGGTCGCGCACGGAACCTCTCGCGGTCGDesign primers
3944803CCCGGG-ACCGGG-ACCGGG-ACCGGG-ACCGGG-ACCGGGDesign primers
3957433GGCGCGGGCGGC-GGCGCGGGCGGC-GGCGGGGGCGGCDesign primers
4003232CCGCGAGAGGATCTCTGCGCCA-CCGCGAGAGGATCTCTGCGCCA-CCGCGAGAGGAAGTCTGCGCCADesign primers
4057176TCCGCTCACCCCTGGGGCG-GCCGCTCACCCCTGGGGCG-GCCGCTCACCCCTGGGGCGDesign primers
4101158GCGGCGAGA-GCGGCGAGA-GCGGCGAGA-GCGGCGAGA-GCGGCGAGADesign primers
4101412TGCCTCGA-TGCCTCGG-TGCCTCGG-TGCCTCGG-TGCCTCGG-TGCCTCGGDesign primers
4288490GCAGAAAACCTCTCGCTGTCGCGCAGAAAACCTCTCGCGGTGGCGCAGAAAACCTCTCGCGGTGGCDesign primers
4401904CCCCGTCCGCGAGAGGATCCCTGCGCGTCCGCGAGAGGATCCCTGCGCGTCCGCGAGAGGATCCCTDesign primers
4410818GCGTCG-GCGTCG-GCGTCG-GCGTCG-GCGTCGDesign primers
4439021CCCGCA-CCCGCA-CCCGCA-CCCGCADesign primers
4439051CCCGCA-CCCGCA-CCCGCA-CCCGCA-CCCGCADesign primers
4519620AACAGC-AACAGC-AACAGC-AACAGCDesign primers
4521713GTCAGGG-GTCAGGG-GTCAGGG-GTCAGGGDesign primers
4559791GCCGGT-GCCGGT-GCCGGT-GCCGGTDesign primers
4661619CCACCG-GCACCG-GCACCG-GCACCG-GCACCG-GCACCG-GCACCG-GCACCGDesign primers
4664740CGGGAGCAG-CGGGAGCAG-CGGGAGCAG-CGGGAGCAGDesign primers

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