Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Thioalkalivibrio sp. HL-EbGR7

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
45943	CGCAAATAAACGCGAATCAACGCAAATCGA	Design primers
77730	GCCGGC-CCCGGC-CCCGGC-CCCGGC-CCCGGC	Design primers
83143	GAAGTGGGAAGGGGGAATTGGGAAGTGC	Design primers
85079	CTGATGCTGGTGCTGATCCTGGTG	Design primers
94273	GCCACAGAGGGCACAGAGGTCACAGAG	Design primers
94395	TTCTCTGTG-ACCTCTGTG-ACCTCTGTG-ACCTCTGTG-CCCTCTGTG-CCCTCTGTG	Design primers
104938	CCGCCACCACCACGGCCACCACCA	Design primers
113721	AAATTCAAGATTCAATATTCAAGATTCA	Design primers
113805	TTGAATTTTGAATCTTAAATTTTGAATG	Design primers
118860	GACAGGATTCACAGGATTTACAGGATT	Design primers
122277	GGCCGGGGCCTGGGCCCGGGACGGGGCGGG	Design primers
124901	GATTCAA-AATTCAA-AATTCAA-AATTCAA	Design primers
124960	TTTGAAT-TTTGAAT-CTTGAAT-TTTGAAT	Design primers
129069	CATCTTGTATCTTGCCTCTTGTATCTTG	Design primers
130745	CCTTGCC-CTTCACC-CTTCACC-CTTCACC-CTTCACC-CTTCACC-CCTCACC-CCTCACC-CCTCACC-CCTCACC-CCTCACC-CCTCACC-CCTCACC-CCTCACC-CCTCACC-CCTCACC-CCTCACC-CCTCACC	Design primers
132900	GCCACAGAGGACACAGAGGGCACAGAG	Design primers
133006	CTCTGTGACCTCTGTGTCCTCTGTGAC	Design primers
138807	TTTTGAA-GTGAGAA-GTGAGAA-GTGAGAA-GTGAGAA-GTGAGAA-GTGAGAA-GTGAGAA-GTGCGAA-GTGAGAA-GTGAGAA-GTGAGAA	Design primers
139296	GCAGGGGCACGGGCAGGAGCAGGT	Design primers
168791	TCCCCGTGCCCCCGTGGCCCCGTG	Design primers
178154	CCTCCGTGGCTCCGTGCCCCCGTG	Design primers
182415	CAAGATTCAAAATTCAAGATTCAAAATT	Design primers
187705	CATTCAAGATTCAAAATTCAACATTCAA	Design primers
188874	GGTCTCTG-CGTCTCTG-CGTCTCTG	Design primers
199689	TGGCCGAGGTGGCCAAGGTGGCGGAGG	Design primers
199878	GGCCACCGCCACGGCCATGGCCAC	Design primers
214805	ACCTTCGC-GCCTTCGC-GCCTTCGC	Design primers
224474	CTCTGCGCCTCCGCGCCTCTGCGG	Design primers
229959	AATTCAG-AATTCAA-GATTCAA-AATTCAA-AATTCAA-GATTCAA	Design primers
230016	CTTTGAA-TTTTGAA-TTTTGAA-TTTTGAA	Design primers
232209	AATTCAA-AATTCAA-GATTCAA-AATTCAA	Design primers
232257	TTGAATTTTGAATCTTGAACTTTGAATT	Design primers
238002	GCTGGTGCTGCTGCTGGCGGTGGT	Design primers
238928	CCTTGCC-ACTAGCC-ACTAGCC-ACTAGCC-ACTAGCC-ACTAGCC	Design primers
246301	AGAGGCAAGAGACAAGATGCAAGAGACA	Design primers
253217	CAAGATACAAGAGACAAGATACAAGAGA	Design primers
255277	TGAAGTGGGAAGTGTGAATTGGGAAGTG	Design primers
288853	TCTTAGCGTCTTTGCGTCTTCGCG	Design primers
289312	CGGGGCGGGGGCCGGTGCCGGGGT	Design primers
289912	AGGTCCAGGTCGAAGTCCAGGTGC	Design primers
292031	CACGGGGGCACGGGGCCACGGAGG	Design primers
292204	CGCGAAGACGCCAAGACGCGAAGA	Design primers
298840	TCGCGGAG-GCGCGGAG-GCGCGGAG-GCGCGGAG	Design primers
299367	TCTCCGCGTCCCCGCGCCTCCGCG	Design primers
305520	CACGGAGCCACGGGGCCACGGAGG	Design primers
305565	TTCCGCGT-CTCCGCGT-CTCCGCGT	Design primers
305870	TCTCACGG-AGACACGG-AGACACGG-AGACACGG-AGACACGG-AGACACGG	Design primers
310788	CGCGGAGG-CGCGGAGG-CGCAGAGG-CGCGGAGA	Design primers
310948	TCTTTGCGTCTTCGCGTCTTGGCG	Design primers
312780	AGTGGCAAGTAGCAAGTGGCTGGTGGCA	Design primers
315259	TCTTCGCGTCTTTGCGGCTTCGCG	Design primers
315452	CGCAGAGG-CGCAGAGG-CGCAGGGG-CGCGGAGG	Design primers
316651	TCTTCGCGTCTTGGCGGCTTCGCG	Design primers
316730	TCACGGAGCCACGGAGTCACGGGG	Design primers
320463	GACGCAAAGGCGCAAAGACGCGAA	Design primers
327607	AACGCAAA-GACGCAAA-GACGCAAA-GACGCAAA	Design primers
327685	CCTTTGCG-TCTTTGCG-TCTTTGCG	Design primers
362205	GTGGCGGTGCCGATGGCGGTGGCG	Design primers
365010	TTCCCACTTCCCAATTCACACTTCGCAC	Design primers
366616	TCGCAGAG-GCGCAGAG-GCGCAGAG-GCGCAGAG	Design primers
366687	CTCTGCGCCTCAGCGCCTCTGCGA	Design primers
370421	CACTTCCCAATTCCCACTTCGCACTTCA	Design primers
371488	GTCCTCTGTGGCCTCTGTGACCTCTGT	Design primers
380648	CTTTGACTTCGACTTCGATTTTGACTTTGT	Design primers
407987	GAAGTGGGAAGTGTGAATTGGGAAGTTG	Design primers
410337	GCAAGTG-GCTAGTG-GCTAGTG-GCTAGTG-GCTAGTG	Design primers
413917	GATTTACAAGATTTACATGATCTACAA	Design primers
415179	GAATTTTGAATGTTGAATCTTGAATTTT	Design primers
419132	CAGGGACAGCGACAGGGCCAGGGC	Design primers
421970	GCCTTT-GACTTT-GACTTT-GACTTT	Design primers
459602	AGATTCA-AGAGACA-AGAGACA-AGAGACA-AGAGACA-AGAGACA	Design primers
461488	TTTCACT-TCTCACT-TCTCACT-TCTCACT	Design primers
463638	GGCGGCATGGGCGACATGGGCGGCATG	Design primers
468078	CCTCCG-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC-CCGAAC	Design primers
468199	CGAACCGGAGCC-CGAACCGGAGCC-CGAACCCGAACC-CGAACCCGAACC	Design primers
468248	GAGCCCGAACCG-GAGCCCGAACCG-GAGCCCGAACCG-GAGCCCGAACCG	Design primers
470392	CCGGGTGCGGGTGCGGGTCCAGGT	Design primers
472143	TTTGAAT-TTTGAAT-CTTGAAT-TTTGAAT	Design primers
473702	TCCCCGTGGCCCCGTGTCTCCGTG	Design primers
479656	TCCTTGC-CACTTGC-CACTTGC-CACTTGC-CACTTGC-CACTTGC	Design primers
480667	TGGGAAGTGTGAAGTGGGAATTTGGAAGTGCGAAG	Design primers
482286	TATTCAA-AATTCAA-AATTCAA-AATTCAA	Design primers
496726	AAATCATGTTAATCATGTAAATCCTGT	Design primers
498186	TAATCCTGTTAATCATGTAAATCCTGT	Design primers
518327	CTTGCCACTAGCCACTTGCTACTTGCCA	Design primers
524947	CGTCGCCTTCGCCGTCGCCTTCGC	Design primers
525771	AAATCCTGTAAATCATGTTAATCCTGT	Design primers
530077	GATTCAA-AATTCAA-AATTCAA-TATTCAA	Design primers
530137	CTTTGAA-TTTTGAA-TTTTGAA-TTTTGAA	Design primers
534876	CGCGAATGAACGCCAATCAACGCGAATGCC	Design primers
535019	CTTCATTCGC-GTTCATTCGC-GTTCATTTGC	Design primers
542941	AAATTCA-AAATTCA-AGATTCA-AAATTCA	Design primers
542990	TTTGAAT-TTTGAAT-CTTGAAT-TTTGAAT	Design primers
546135	GCAGGCGCTGGCCCAGGCGAAGGC	Design primers
550897	CTTTGAATTTTGAACCTTGAATTTTGAA	Design primers
552286	TTCAAAATTCAAGATTCAAAATTCAAAG	Design primers
587057	ACTCTGTGA-CCTCTGTGA-CCTCTGTGA	Design primers
599721	TTTGAATCTTGAATTTTGAATCTTGAAT	Design primers
602188	GCCACAGAGGACACAGAGGTCACAGAG	Design primers
604997	AGAGACAAGAGGCAAGATACAAGATACAAGAGAAA	Design primers
610644	GCCACAGAGGACACAGAGGTCACAGAG	Design primers
610787	CTCTGTGACCTCTGTGCCCTCTGTGGC	Design primers
619867	CCTCCGTGCCTCTGTGGCTCCGTG	Design primers
619977	TCTCCGCG-CCTCCGCG-CCTCCGCG	Design primers
629879	CGCAAAGA-CGCAAAGA-CGCGAAGA-CGCGAAGA	Design primers
629935	TCTTGGCGTCTTCGCGTCTTCGCG	Design primers
663661	GGAAGTGCGAAGTGGGAATTGGGAAGGGCGAAGTG	Design primers
664369	TCCCCCTTCCCACTTCCCCATTCACCCT	Design primers
665323	AATTCAAGATTCAAAATTCAAGATTCAA	Design primers
670407	CGCGAATGAACGCGAATGGACGCAAATGGA	Design primers
670545	TCATTCGCGTTGATTAGCGTTCATTTGCGG	Design primers
671123	GGAAGTG-CGAAGTG-GGAATTG-GGAAGTA-GGAAGTA-GGAAGTA	Design primers
675516	CAATTCC-CACTTCC-CACTTCC-CACTTCC	Design primers
680867	ACAGGATTAACATGATTAACAGGATTA	Design primers
681721	GATAATT-CAAAATT-CAAAATT-CAAAATT-CAAAATT-CAAAATT	Design primers
681798	TTTGAAT-TTTGAAT-CTTGAAT-GTTGAAT	Design primers
708701	AAGGATG-AAGGGTG-AAGGGTG-AAGGGTG	Design primers
708825	GTTCACC-CCTCACC-CCTCACC-CCTCACC-CCTCACC-CCTCACC	Design primers
715634	TCATACT-TCCAACT-TCCAACT-TCCAACT-TCCAACT-TCCAACT	Design primers
735283	GACAGGATT-AACAGGATT-AACAGGATT	Design primers
746152	GACGCCT-CCCGCCT-CCCGCCT-CCCGCCT-CCCGCCT-CCCGCCT	Design primers
756181	CCG-GCG-CCG-ACG-GCG-GCG-GCG-GCG	Design primers
764400	GAAGGATGAAGGTTGAAGGTTGAAGAAT	Design primers
764446	TTCATCC-TTCAACC-TTCAACC-TTCATCC	Design primers
768157	ACCTTCGTGGCCTTCGTGAGCTTCGTG	Design primers
778236	TCTTGGC-CACTTGC-CACTTGC-CACTTGC-CACTTGC-CACTTGC-CACTTGC-CACTTGC-CACTTGC-CACTTGC-CACTTGC-CACTTGC	Design primers
786849	CTTGCCACTAGCCACTTGTCACTAGCCA	Design primers
790131	GCTGAATTCGAAGGCTAAATTCGAAGGCTAAATTCGAAGGCTAAATTCGAAGGCTAAATTCAAAG	Design primers
793442	GGCCCTGGCCCGGGCCATCGCCCT	Design primers
799339	CTCTGTGACCTCTGTGTCCTCTGTGGC	Design primers
810148	CGGTGGCGCCGGTGGTGCCGGTGCCGC	Design primers
844485	TTTGAAT-TTTGAAT-CTTGAAT-TTTAAAT-TTCGAAT-TGTGAAT	Design primers
862097	TCTTGGCGTCTTCGCGTCTTGGCG	Design primers
875241	AATTCAA-AATTCAA-GATTCAA-CATTCAA	Design primers
875690	TTTGAATTTTGAGTTTTGAATCTTGAAT	Design primers
876608	ATTCAAAATTCAATATTTAAAATTCAAA	Design primers
876689	TTTGAATGTTGAATTTTGAATATTGAAT	Design primers
882319	AGATTCA-AGATTCA-AAATTCA-AAATTCA-AAATTCA-AAATTCA	Design primers
882381	TTTGAAT-TTTGAAT-CTTGAAT-CTTGAAT	Design primers
885060	CGCGAATGAACGCCAATCAACGCAAATGAA	Design primers
885202	TTTATTGGCGTTGATTCGCGTTCATTCGCG	Design primers
885613	TGAAGTGGGAAGTGTGAATTGGGAAGTG	Design primers
886017	GGGCCAGGGTCAGGGCCAGGACCAGGCCCA	Design primers
903226	CTTTGTGTTTTGTGCTTGGTGTTTTGTGCGTTGTG	Design primers
907704	TTTGAAT-TTTGAAT-CTTGAAT-CTTGAAT-GTTGAAT-TTCGAAT	Design primers
912633	GTGGAACTGGAAGTGGATGAGGAA	Design primers
913495	TGCTTTT-GACTCCT-GACTCCT-GACTCCT-GACTCCT-GACTCCT-GACTCCT-GACTCCT-GACTCCT	Design primers
927087	CAAAGACG-CAAAGACG-CAATGACG	Design primers
927714	CGTGGA-ACCGGA-ACCGGA-ACCGGA-ACCGGA-ACCGGA-ACCGGA-ACCGGA-ACCGGA	Design primers
927769	CCGGAA-CCCGAG-CCCGAG-CCCGAA-CCCGAA-CCCGAG-CCCGAA-CCCGAA-CCCGAA-CCCGAA-CCCGAA-CCCGAA-CCCGAA-CCCGAG-CCCGAA-CCCGAG-CCCGAA-CCCGAG-CCCGAA-CCCGAG-CCCGAG	Design primers
933808	CCAGGCCGAGGCCGAGGCCCTGGC	Design primers
939078	CGCAAAGACGCGAAGACGCAGAGA	Design primers
946336	GAAGTGAGAAGTGGGAATTGAGAAGTGGGAAGTGA	Design primers
952315	TCACTTCGCACTTCCCAATTCCCACTTCCCAATTCCCACTTCCCACTTCTCACTTCCCCGTTC	Design primers
952755	TGAGGGC-AAGTGGC-AAGTGGC-AAGTGGC-AAGTGGC-AAGTGGC-AAGTGGC-AAGTGGC-AAGTGGC-AAGTGGC-AAGTGGC-AAGTGGC-AAGTGGC-AAGTGGC-AAGTGGC	Design primers
952916	CCTCTGCGCCTCCGCGTCTCTGCG	Design primers
963652	TCTCTGTGA-CCTCTGTGA-CCTCTGTGA-CCTCTGTGA	Design primers
965310	AGACTTG-CCACTTG-CCACTTG-CCACTTG-CCACTTG-CCACTTG	Design primers
970303	CGGCGGTGGCGGCGGCAGCGGTGG	Design primers
997343	TAAATTC-AAAATTC-AAGATTC-AAAATTC-AAAATTC-AAAATTC	Design primers
997407	TTTCCAC-CTTTGAA-TTTTGAA-TTTTGAA-TTTTGAA-TTTTGAA-TTTTGAA-TTTTGAA-TTTTGAA-TTTTGAA-TTTTGAA-TTTTGAA	Design primers
1002490	TGAAGTGCGAAGTGTGAATTGGGAAGTG	Design primers
1002525	GAAGTGGGAAGTGTGAATTGGGAAGTCG	Design primers
1015690	CGCCAAGACGCGAAGACGCCAAGA	Design primers
1015733	TCCCCGTGGCCCCGTGTCTCCGTG	Design primers
1023756	AGATTCA-AAATTCA-AAATTCA-AAATTCA	Design primers
1033512	TCACGGGGTCACTGGGACACGGGG	Design primers
1039152	CGCGGAGACGCAGAGACGCGGGGA	Design primers
1039195	TCGCAAAG-GCGCAAAG-GCGCAAAG	Design primers
1046040	TTCCCACTTCCCAATTCACACTTCCCAC	Design primers
1047009	GGCAAGAGGCAAGTTGCAAGAGGCAAGT	Design primers
1050570	CGACGCCGAGGCCCACGCCGACGA	Design primers
1051378	GCGACATCTTCGAGGACATCTTCGGCGACATCTTCG	Design primers
1052264	AGAGGCAAGTGGCAAGAGACAAGAGGCA	Design primers
1052307	TCTTGTCTCTTGCCTCTTGTATCTTGTCTCTAGTC	Design primers
1054959	ATTTGCGTCCATTCGCGTTCATTTGCGGAC	Design primers
1092657	TATTCAA-GATTCAA-GATTCAA-GATTCAA	Design primers
1096018	TTGACAGGATTGACATGATTTACAGGA	Design primers
1096115	TCTCTGCGTCTCCGCGCCTCTGCG	Design primers
1099751	TCATCCATAATCCATCAGCCATCATCCT	Design primers
1113978	AATTCAA-GATTCAA-GATTCAA-GATTCAA	Design primers
1114871	TTTCTTG-CCACTAG-CCACTAG-CCACTAG-CCACTAG-CCACTAG-CCACTAG-CCACTAG-CCACTAG	Design primers
1119015	GGGCCAGGGCGAAGGCCAGGGTCA	Design primers
1119456	TCTGAAGTGAGAAGTGAGAAGTGAGAAGTGAGAAGTGAGAAGTCAGAAGTGAGAGG	Design primers
1143493	AATTCAA-GATTCAA-AATTCAA-AATTCAA	Design primers
1162239	CAAGATG-CAAGATG-CAAGAGG-CAAGAGG	Design primers
1166305	CTCTGTGTCCTCTGTGACCTCTGTGGC	Design primers
1213022	GCCACAGAGGTCACAGAGGGCACAGAG	Design primers
1213093	CACGCCTGACGCCTCACTCCTCACGTCT	Design primers
1219287	CGGGCGCAGGTTCGGGCTCAGGCTCGGGCTCAGGTG	Design primers
1220510	CACGGGTTCGGGCTCGGGCTGAGGTTCCGGTTCGGGCTCGGGCTGAGGTTCCGGTTCGGGCTCGGGCTGGGGTTCCGGTTCGGGCTCGGGCTGAGGTTCCGGTTCGGGCTCGGGCTGGGG	Design primers
1220651	GGGTTCCGGTTCGGGCTCGGGTTG	Design primers
1227040	CGCAGAGGCGCGGAGGCGCAGAGG	Design primers
1227077	ACAGGATTTACATGATTTACAGGATTG	Design primers
1227199	CTCTGCGCCTCCGCGCCTCTGCGG	Design primers
1228082	GTGAAGTGGGAAGTGTGAATTGGGAAGTGGGAAGT	Design primers
1242491	CTCTTGTCTCTTGAATCTTGTCTCTTGC	Design primers
1260943	CCTATTG-TCACTTC-TCACTTC-TCACTTC-TCACTTC-TCACTTC-TCACTTC-TCACTTC-TCACTTC	Design primers
1269876	TGAAGTGCGAAGTGTGAATTGGGAAGTG	Design primers
1277394	TGTTAATCCTGTTAATCATGTAAATCC	Design primers
1283007	GCCGCGGAGACGCGGAGGCGCGGA	Design primers
1286780	GGAAGTG-GGAAGTG-TGAAGTG-GGAAGTG	Design primers
1288460	ATTTAAA-ATTCAAA-ATTCAAA-ATTTAAA	Design primers
1288503	CTTTGAA-TTTTGAA-TTTTGAA-TTTTGAA	Design primers
1313250	TTTGAAT-CTTGAAT-CTTGAAT-CTTGAAT-CTTGAAT	Design primers
1325051	CTACACCCTTCCCA-ATTCACCCTTCCCA-ATTCACCCTTCCCA-ATTCACCCTTCCCA-ATTCACCCTTCCCA	Design primers
1327584	GGTCAGGGGTGAGGGGTGAGGAGTCAGGGGGCAGG	Design primers
1327753	CCTCACTCCTTACTCCTCATTCCTCACT	Design primers
1329279	ACGCAAAGACGCGAAGACGCAGAG	Design primers
1338214	TAAATCCTGTAAATCATGTTAATCCTG	Design primers
1342242	CTG-GTG-CTG-CTG-CTG-GTG-CTG-CTG	Design primers
1348830	AATTCAAGATTCAAAGTTCAAGATTCAA	Design primers
1348917	TTGAATCTTAAATCTTGAATTTCGAATC	Design primers
1351331	TACTCTT-GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTA	Design primers
1351395	CCACCAGCTACTAG-CCACCAGCTACTAG-CTACTAGCTACTAG	Design primers
1365888	TCTTGGCGTCTTCGCGTCTTGGCG	Design primers
1366240	TGAGGCG-TAAGGCG-TAAGGCG-TAAGGCG-TAAGGCG-TAAGGCG	Design primers
1372173	GCCACAGAGGGCACAGAGGTCACAGAG	Design primers
1372267	CGCCAAGACGCGAAGACGCCAAGG	Design primers
1372752	CTCTGTGACCTCTGTGCCCTCTGTGGC	Design primers
1372924	CGCTGGCGCCGGCGGTGGCGCCGG	Design primers
1373449	CCGTTCT-CACTTCT-CACTTCT-CACTTCT-CACTTCT-CACTTCT	Design primers
1425968	GCCGTGA-GGCGTGA-GGCGTGA-GGCGTGA	Design primers
1429748	AGGCCGAGACCGAGGCCAAGCCCG	Design primers
1447795	CACTCCT-CACTCCT-CATTCCT-CACTTCT-CACTCCT-CACTTCT-CACTTCT-CACTTCT	Design primers
1454526	GACTCTGTG-ACCTCTGTG-ACCTCTGTG-TCCTCTGTG-TCCTCTGTG-TCCTCTGTG	Design primers
1455332	TTCCCACTTCCCAAATCCCACTTCTCAC	Design primers
1470326	AAATTCAAGATTCAAAATTCAAAATTCA	Design primers
1476460	ACGCAAAGGCGCAAAGACGCGAAG	Design primers
1491366	GCCACAGAGGGCACAGAGGTCACAGAG	Design primers
1491494	CTCTGTGACCTCTGTGCCCTCTGTGGC	Design primers
1526452	TGCTGGTGCAGGCGCTGGTGATGG	Design primers
1541300	TTAATCCTGTTAATCGTGTAAATCCTG	Design primers
1542297	CGCGAATGAACGCAAATCAACGCGAATTCA	Design primers
1542456	CATTCGCGTTGATTTGCGTTCATTCGCGGA	Design primers
1545489	CGGCGCGGCCCTGCGCGCCGAGGCG	Design primers
1550015	GCGTGAGGGGTGAGGCGTGAGGCGTGAC	Design primers
1550076	CTTGCCA-CTAGCCA-CTAGCCA-CTAGCCA-CTAGCCA	Design primers
1553492	CTTGATTTGCGTTGATTCGCGTTCATTTGC	Design primers
1564752	AATTCAA-TATTCAA-AATTCAA-AATTCAA	Design primers
1564806	TTTTGAATGTTGAACTTTGAATCTTGAA	Design primers
1571336	GAGGTCATGGCCGAGGGCGTGGCCAAGGTCAAGGCC	Design primers
1572217	GCACCGGCCCCGGCTCCGGCTCCG	Design primers
1582266	TGACTTG-CCACTTG-CCACTTG-CCACTTG-CCACTTG-CCACTTG	Design primers
1588240	AATTCAA-AATTCAA-GATTCAA-AATTCAA-GATTCAA	Design primers
1588326	TTGAATTTTGAATCTTAAATTTTGAATT	Design primers
1592466	AGAGACA-AGAGACA-AGAGGCA-AGAGACA	Design primers
1593152	ACGCAAAGACGCGAAGACGCAAAG	Design primers
1593223	TCTTTGCGTCTTCGCGTCTTTGCG	Design primers
1613917	AGCGCAGCGAAGCCCAACGCAGCGG	Design primers
1615156	GCCACAGAGGTCACAGAGGTCACAGAG	Design primers
1618061	CACTTCCCAATTCCCACTTCGCACTTCA	Design primers
1624278	GTCTTTGCGGACTTTGCGGACTTTGCG	Design primers
1632119	CTTTGCGT-CTTTGCGT-CTTCGCGT	Design primers
1640844	GAATTCA-AAATTCA-AAATTCA-AAATTCA	Design primers
1640894	TTTGAAT-ATTGAAT-CTTGAAT-CTTGAAT-CTTGAAT	Design primers
1649888	AACTCTGTGACCTCTGTGACCTCTGTG	Design primers
1662626	CAGGGCAAGGGCCAGGGGCAGGAC	Design primers
1668246	CAGGCC-CAGGCC-CAGGAC-CAGGCA	Design primers
1691906	CCGCGAATGAACGCGAATCAACGCGAATAA	Design primers
1710396	CGCGGAGGCGCGGAGACGCAGAGG	Design primers
1718611	CGGCCA-CGGCCA-CGCCCA-CCGCCA	Design primers
1757005	ACCGCCGCCAGCCGCTGCCAGCCGCGGCCA	Design primers
1757099	GCTCGGGCGCGGCCTCGGGCTCGG	Design primers
1830573	GCGGTGGCGGTCACGGTGGCGGAG	Design primers
1865684	ACCCGAGGTTCGTACGAATGAATGTGACGTTCGTACGAATGAATGTGACGTTCGTACGAATGA	Design primers
1898554	AACAACCATAGTGGTTTAACCAACCATGGTGGTTTAACTAACCACAGTGGTTTA	Design primers
1926091	TGGGACAGTTCCAGTTCCTGGGACAGTTCCAGCAGCTGGGACAGCTCAAGTTCA	Design primers
1940565	TTTGAATCTTGAATTTTGAACGTTGAAT	Design primers
1996637	GCCGAGGACGAGGCCAAGGCCGAG	Design primers
2046952	GAATTGG-GAAGTGG-GAAGTGG-GAAGTGG	Design primers
2064544	CGCAAAGGCGCAAAGCCGCGAAGG	Design primers
2064648	CTCCGCGCCTCAGCGCCTCCGCGA	Design primers
2070302	TCACGGAGGCACGGAGCCACGGAG	Design primers
2070965	TCTTGGCGTCTTTGCGTCTTCGCG	Design primers
2072721	CTCTGTGACCTCTGTGCCCTCTGTGGC	Design primers
2080048	GCACCAGCACCGACACCAGCACCG	Design primers
2091554	CGCCACCGCCGCCGCCAGCGCCAC	Design primers
2095310	TTGTCAG-TGGTCAG-TGGTCAG-TGGTCAG	Design primers
2095469	CGCAAAGCCGCGAAGCCGCAAAGG	Design primers
2095533	GTGTCTTCGCGTCTTCGCGTCTTC	Design primers
2097854	CCTCGTG-TGTTGTG-CTTTGTG-CTTTGTG-CTTTGTG-CTTTGTG-CTTTGTG-CTTTGTG-CTTTGTG-CTTTGTG-CTTTGTG-CTTTGTG-CTTTGTG-CTTTGTG-CTTTGTG	Design primers
2102024	TCACGGAGCCACGGAGGCACGGAG	Design primers
2102146	TCGCAGAG-GCGCAGAG-GCGCAGAG	Design primers
2103531	CGCAGAGG-CGCAGAGG-CGCGGAGG	Design primers
2104974	CACGGGGACACGGAGACACGGGGA	Design primers
2105905	TCGCGGAG-GCGCGGAG-GCGCGGAG	Design primers
2106197	CGCAGAGGCGCAGAGACGCGGAGG	Design primers
2113710	AGTGGCAAGTAGCAAGTGGCAAGTGGCA	Design primers
2113843	CTTGCCACTAGCCACTTGCCACTTGCCA	Design primers
2123784	CACTTCCCAATTCCCACTTCCAACTTCC	Design primers
2132587	GGAAGTGGGAATTGCGAAGTGCGAAGTG	Design primers
2134292	GATTCAA-CATTCAA-AATTCAA-AATTCAA-AATTCAA-AATTCAA-AATTCAA	Design primers
2134363	CTTGAAT-TTTGAAT-TTTGAAT-ATTGAAT	Design primers
2135879	TTCCCACTTCCCAATTCACACTTCGCAC	Design primers
2148155	CTTTGCGTCTTCGCGTCTTTGCGT	Design primers
2150447	GCTCGCGCACGCGCTCCCGCTCGG	Design primers
2151169	GCGGCCTGGGCGGCCTCGGCGGCCTGG	Design primers
2151474	TTCCAGTTCCCGGTCCAGTTCCCG	Design primers
2153113	ATTCAAAATTCAAGATTTAAAATTCAAA	Design primers
2153188	TTTGAAT-CTTGAAT-TTTGAAT-TTTGAAT-GTTGAAT	Design primers
2172384	GCCACAGAG-GGCACAGAG-GGCACAGAG-GGCACAGAG	Design primers
2172542	CTCTGTGAC-CTCTGTGAC-CTCTGTGGC	Design primers
2177051	GCCACAGAGGGCACAGAGGACACAGAG	Design primers
2186306	CTTGTCTCTTGCCTCTTGTCTCTTGTCT	Design primers
2190750	AATTCAA-AATTCAA-GATTCAA-AATTCAA	Design primers
2190848	TTTGAATCTTGAATTTTGAATCTTGAAT	Design primers
2208238	CTTCGTG-CTTTGTG-CTTTGTG-CTTTGTG	Design primers
2210126	GGTTTGT-GCTTGGT-GCTTGGT-GCTTGGT-GCTTGGT-GCTTGGT	Design primers
2210864	GTAGTGC-TTGGTGC-TTGGTGC-TTGGTGC-TTGGTGC-TTGGTGC	Design primers
2232303	TCCTTTG-TGCTTTG-TGCTTTG-TGCTTTG	Design primers
2232466	TGGTCAG-GGGTCAG-GGGTCAG-GGGTCAG	Design primers
2233288	TTCTTCG-TCAGTGG-TCAGTGG-TCAGTGG-TCAGTGG-TCAGTGG-TCAGTGG-TCAGTGG-TCAGTGG	Design primers
2241106	AGAGACAAGATACAAGAGGCAAGAGACAAGAGAAA	Design primers
2245508	CGCCAAGCCGCGAAGCCGCCAAGA	Design primers
2245554	CCTTCGCG-TCTTCGCG-TCTTCGCG	Design primers
2249195	CCTTTGCGCCTTCGCGCCTTTGCG	Design primers
2250200	ACGCAAAGGCGCAAAGACGCAAAG	Design primers
2250225	GCGCAAAGG-GCGCAAAGG-GCGCAAAGG-GCGCAAAGA	Design primers
2251099	CCTTTGCGCCTTCGCGTCTTTGCG	Design primers
2253094	TGATACA-AGATACA-AGATACA-AGATACA	Design primers
2256605	AATTCAA-GATTCAA-GATTCAA-AATTCAA	Design primers
2256669	TTTGAATCTTGAATGTTGAATCTTGAAT	Design primers
2258528	GAAGTGAGAAGTAAGAATTGAGAAGTGG	Design primers
2259539	GAAGTGG-GAAGTGG-GAAGTAG-GAAGTAG-GAAGTAG	Design primers
2264604	AATTCAA-GATTCAA-AATTCAA-GATTCAA-GATTCAA	Design primers
2264656	CTTTGAA-TTTTGAA-TTTTGAA-TTTTGAA	Design primers
2266976	AATTCAA-GATTCAA-GATTCAA-AATTCAA	Design primers
2267022	TTTGAAT-TTTGAAT-CTTGAAT-CTTGAAT	Design primers
2284328	AAGTGGGAAGTGAGAATTGGGAAGTGCG	Design primers
2291215	TATCTTGTCTCTTGTATCTTGTCTCTTG	Design primers
2309206	ACGCAAAGACGCGAAGACGCAAAG	Design primers
2309299	TCTTCGCGTCTTTGCGTCTTTGCG	Design primers
2311533	GCCACTAACCACTAGCCACTTGCCACTG	Design primers
2352470	CTCGCAGAGACGCAGAGACGCAGAGACGCAGAGACGCAGAGACGCGGA	Design primers
2352537	TCTCCGCGCCTCCGCGTCTCTGCG	Design primers
2363702	CAGTGGC-AAGTGGC-AAGTGGC-AAGTGGC	Design primers
2365793	AGAGACAAGATACAAGAGGCAAGAGACA	Design primers
2371295	TTTGAAT-TTTGAAT-CTTGAAT-CTTGAAT	Design primers
2380416	CTCTGTGACCTCTGTGTCCTCTGTGGC	Design primers
2381923	TGGTCAG-TAGTCAG-TAGTCAG-TAGTCAG	Design primers
2381961	CTACTGA-CCACTGA-CCACTGA-CCACTGA	Design primers
2387203	CACCGCCACCACCAGCGCCACCGC	Design primers
2390186	TCTTGCC-CCTTGCC-CCTTGCC-TCTTGCC	Design primers
2401238	TCTTGCCTCTTGTCTCTTGCATCTTGCC	Design primers
2404359	GACAAGAGACAAGTGGCAAGAGACAAGT	Design primers
2418653	CTTTGCGTCTTCGCGTCTTTGCGT	Design primers
2421202	GATTCAA-GATTCAA-CATTCAA-GATTCAA	Design primers
2421256	TTTGAATATTGAATCTTGAATATTGAAT	Design primers
2430454	GGGGCAA-GTGGCAA-GTGGCAA-GTGGCAA-GTGGCAA	Design primers
2444210	ACCTCAC-CCCTCAC-CCCTCAC-CCCTCAC	Design primers
2459500	CAGTGGCTAGTGGCAAGTGGCTAGTGGC	Design primers
2472050	TCTCCGCGTCTCTGCGCCTCCGCG	Design primers
2489263	TCGCGGAG-GCGCGGAG-GCGCGGAG	Design primers
2491304	TCGCGGAG-GCGCGGAG-GCGCGGAG	Design primers
2499587	GCGACATCACACCGACAGCACAGGGGCATCACA	Design primers
2516348	TCTCCGCGTCTCAGCGCCTCCGCG	Design primers
2517395	CGCGGAGGCGCTGAGGCGCGGAGA	Design primers
2548053	ACTAGCC-ACTAGCC-ACTGGCC-ACTTGCC	Design primers
2557767	GCTGCTGCTGGTGGTGCTGCTGAT	Design primers
2561792	GTCTGAA-GTGAGAA-GTGAGAA-GTGAGAA-GTGAGAA-GTGAGAA	Design primers
2561841	CCCACTTCCCAATTCCCCCTTCCCACTT	Design primers
2567213	CTTTGAA-TTTTGAA-TTTTGAA-TTTTGAA	Design primers
2580512	CTACATTACGTAATACATTTCGTAATACATTTCGTA	Design primers
2594933	CCTTGCC-ACTTGCC-ACTTGCC-ACTTGCC	Design primers
2596174	CACTTCCCAATTCCCACTTCGCACTTGC	Design primers
2600314	ATTCAAAGTTCAAAATTCAAGATTCAAA	Design primers
2600356	TTTGAATCTTGAATTTTGAATCTTGAAT	Design primers
2601322	GACAGGATTGACATGATTAACAGGATT	Design primers
2608703	GAAGTGGGAAGTTGGAATTGGGAAGTGC	Design primers
2611091	ACAGGATTAACATGATTAACAGGATTT	Design primers
2611132	CCTGTTAATCATGTTAATCATGTTAAT	Design primers
2613136	GCCACTTGCTACTTGCCACTAGCCACTG	Design primers
2617937	AATCATGTCAATCATGTTAATCCTGTC	Design primers
2630497	AAAATCC-AAGATTC-AAAATTC-AAAATTC-AAAATTC-AAAATTC	Design primers
2630562	TTTGAAT-CTTGAAT-TTTGAAT-TTTGAAT	Design primers
2647832	CTCCTT-CTCCTT-GTCCTT-CTCCTC	Design primers
2662780	GATGGGATCCGGCATGGGCATGGGGCCCGGCATGGGCATGGGGCCCGGCATGGGCATGGGGCCCGGCATGGGCATGGGACCCGGCATGGGCATGGGACCCGGTATGGGCATGGGACCCGGTATGGGCATGGGACCCGGTATGGG	Design primers
2662925	ATGGGT-ATGGGT-ATGGGT-ATGGGT-ATGGGT-ATGGGC	Design primers
2671513	AACAGC-ACCAGC-ACCAGC-AGCAGC	Design primers
2676731	GATTCGG-AATTCAA-AATTCAA-GATTCAA-GATTCAA-GATTCAA-GATTCAA-GATTCAA-GATTCAA	Design primers
2676833	TTTGAATCTTGAATTTTGAATGTTGAAT	Design primers
2691067	TTCCCACTTCCCAATTCACACTTCCTAC	Design primers
2762448	CTCCGCGCCCCCGCGCCTCCGCGA	Design primers
2763936	CTTGCCTCTTGTCTCTTGCATCTTGCCT	Design primers
2769527	CTCTGCGCCTCCGCGCCTCTGCGG	Design primers
2770786	CGCAGAGGCGCGGAGGCGCAGAGA	Design primers
2775267	TCTCCGCG-TCTCCGCG-CCTCCGCG	Design primers
2780416	TAATCCTGTTAATCATGTAAATCCTGT	Design primers
2785970	CGGCAT-GGGCAT-CGGCAT-CGGCAT	Design primers
2797903	AATTCAAGATTCAATATTCAAAATTCAA	Design primers
2797985	TTTGAATTTTTAATCTTGAATCTTGAAT	Design primers
2802888	CGCCGTGGGTGCCGTGGGCGCCGTGGT	Design primers
2803462	AATTCAACATTCAAAGTTCAAAATTCAA	Design primers
2804375	GCCACAGAGGGCACAGAGGACACAGAG	Design primers
2804522	CTCTGTGACCTCTGTGTCCTCTGTGGC	Design primers
2820059	GGCTTGA-GGGCAGT-GGCTAGT-GGCTAGT-GGCTAGT-GGCTAGT-GGCTAGT-GGCTAGT-GGCTAGT	Design primers
2834783	GCAACTG-ACAACTG-ACAACTG-ACAACTG	Design primers
2846896	GATTCAAAATTCAAGATTCAAAATTCAA	Design primers
2846968	TTTGAAT-TTTGAAT-TATGAAT-TTTGAAT	Design primers
2848125	AGAGACAAGAGGCAAGTGACAAGATACA	Design primers
2860211	TCTCCGTGTCCCCGTGGCTCCGTG	Design primers
2862572	GCCACAGAGGTCACAGAGGACACAGAG	Design primers
2862635	CTCTGTGACCTCTGTGTCCTCTGTGGC	Design primers
2875847	ACTTCCCAATTCCCAATTCCCAATTCCCACTTCTC	Design primers
2877211	GAAGTGA-GAAGTGA-AAAGTGA-GAAGTGC	Design primers
2879387	AAGACGCAGAGGACGCAGAGGACGCAG	Design primers
2885120	GCCACAGAG-GCCACAGAG-GTCACAGAG	Design primers
2885262	TCCTCTGTGACCTCTGTGGCCTCTGTG	Design primers
2888859	AATTCAAGATTCAAAGTTCAAGATTCAA	Design primers
2891368	CTCTGCGCCTCAGCGCCTCTGCGG	Design primers
2892302	GGTCGTGGTGGTGGTCGTGGGCGT	Design primers
2895958	AATTCAA-AATTCAA-GATTCAA-GATTCAA-AATTCAA	Design primers
2898656	GCCACAGAGGTCACAGAGGTCACAGAG	Design primers
2898818	CTCTGCGCCTCCGCGCCTCTGCGG	Design primers
2900849	TCTCTGCGTCTCCGCGCCTCTGCG	Design primers
2905897	CAATTCA-AAATTCA-AAATTCA-AAATTCA	Design primers
2905944	CTTTGAA-TTTTGAA-TTTTGAA-TTTTGAA	Design primers
2912119	GAAGAAAGCGGTGAAAAAGGCGGTGAAGAAGGCCGT	Design primers
2912231	AAGAAGGCAGCACCGAAGAAGAAGGCAACAACCAAGAAGAAGGCCGCCCCCAAG	Design primers
2924507	TTGGGGG-TCAGGGG-TCAGGGG-TCAGGGG-TCAGGGG-TCAGGGG	Design primers
2938781	GAACAGGGACAGGAACACGAACAC	Design primers
2939962	TATATACACAGATATATACACATATACACC	Design primers
3019054	TTGACAGGATTGACATGATTAACAGGA	Design primers
3022275	AATTCAA-AATTCAA-GATTCAA-CATTCAA	Design primers
3022325	CTTGAAT-CTTGAAT-ATTGAAT-CTTGAAT	Design primers
3025068	GATTCAA-AATTCAA-AATTCAA-GATTCAA-AATTCAA	Design primers
3025907	TTCTCTGC-GTCTCTGC-GTCTCTGC	Design primers
3026720	ACCTTTGCG-CCCTTTGCG-CCCTTTGCG	Design primers
3067840	AGGCCAG-AGACAAG-AGACAAG-AGACAAG-AGACAAG-AGACAAG	Design primers
3067900	ACTTGTC-TCTTGTC-TCTTGTC-TCTTGTC	Design primers
3070457	GGGAAGT-GAGAAGT-GAGAAGT-GAGAAGT-GAGAAGT	Design primers
3070499	CTAAACT-TCCTACT-TCCTACT-TCCTACT-TCCTACT-TCCTACT-TCCTACT-TCCTACT-TCCTACT	Design primers
3070566	ACTTCCCAATTCCCAATTCCCACTTCTCACTTCCG	Design primers
3096457	AATTCAA-AATTCAA-GATTCAA-AATTCAA	Design primers
3099351	GGACAAG-TGACAAG-TGACAAG-TGACAAG	Design primers
3099380	GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGT	Design primers
3113528	ACAATTC-AAGATTC-AAGATTC-AAGATTC-AAAATTC-AAAATTC	Design primers
3113598	TTTGAAT-CTTGAAT-CTTGAAT-TTTGAAT-TTTGAAT-CTTGAAT-TTTGAAT	Design primers
3126870	TCCATTTGCGTTCATTCGCGTTCATTCGCG	Design primers
3129024	TTGTGCTTCGTGCTTTGAGCTTTGTGCT	Design primers
3133409	TTTGAAT-CTTGAAT-CTTGAAT-CTTGAAT	Design primers
3172646	CTTCCCACCTCCCACTTCCTACTTCTCACTTCCCA	Design primers
3215588	GACAGGATTGACATGATTTACAGGATT	Design primers
3216396	CAATTCA-AAATTCA-AAATTCA-AAATTCA	Design primers
3216448	TTTGAAT-CTTGAAT-TTTGAAT-TTTGAAT	Design primers
3219394	GATTCAAAATTCAAGATTCAAAATTCAA	Design primers
3219455	TTTGAAT-TTTGAAT-CTTGAAT-TTTGAAT	Design primers
3226885	GCCACAGAGGACACAGAGGTCACAGAG	Design primers
3227007	TCCTCTGTG-ACCTCTGTG-ACCTCTGTG	Design primers
3242571	GAGGGGT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT	Design primers
3246816	GGCCTGGCCCTGGGGCTGGGCATG	Design primers
3252217	AATTCAACATTCAAGATTCAAAGTTCAA	Design primers
3252268	AATGTTG-AATGTTG-AATTTTG-AATGTGG	Design primers
3253138	CGGCACCGGCCCCGCCACCGGCAC	Design primers
3266599	CGCAGAGACGCTGAGACGCAGAGG	Design primers
3266657	CTCTGCGTCCCTGCGTCTCTGCGG	Design primers
3284343	ATTCAAAATTCAACGTTCAAAATTCAAA	Design primers
3294379	CGCGAAGACGCAAAGACGCCAAGA	Design primers
3295524	CAATTTGCGTCCATTCGCGTCTATTTGCGG	Design primers
3311643	GGCGGTATG-GGCGGTATG-GGCGGCATG	Design primers
3314368	GCCACAGAGGGCACAGAGGACACAGAG	Design primers
3327792	CCGCCCTGCCCCGACTCGCCCTGCC	Design primers
3336374	TTGACAGGATTGACATGATTTACAGGA	Design primers
3336952	TTGACAGGATTGACATGATTTACAGGA	Design primers
3355732	CAAGATACAAGATCCAAGAGACAAGATACAAGAAA	Design primers
3357564	AGACAAGAGGCAAGATACAAGAGACAAG	Design primers
3357745	GGA-CGG-CGG-TGA-CGG-CGG-CGA-CGG-CGG	Design primers
3363467	CCTTTGCGCCTTCGCGTCTTTGCG	Design primers
3387525	ACGTGGACCTGGGCGTGGGCGTGG	Design primers
3389798	GCCGCAGAGCCGCGGAGGCGCAGA	Design primers
3389918	TCTCTGCGTCTCCGCGCCTCTGCG	Design primers
3419438	GAAGTGG-CAAGTGG-CAAGTGG-CAAGTGG	Design primers
3419541	CTTGCCA-CTAGCCA-CTAGCCA-GTTGCCA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

45943

CGCAAATAAACGCGAATCAACGCAAATCGA