Microsatellites /Tandem Repeats database

Genome: Thioalkalivibrio sp. HL-EbGR7

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
77731CCGGCC-CCGGCC-CCGGCC-CCGGCC-CCGGCCDesign primers
94397CTCTGTGAC-CTCTGTGAC-CTCTGTGACDesign primers
124902ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAADesign primers
130750CCCTTCA-CCCTTCA-CCCTTCA-CCCTTCA-CCCTTCADesign primers
130786CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCAC-CCCTCACDesign primers
138810TGAAGTGAGAAGTGAGAAGTGAGAAGTGAGAAGTGAGAAGTGAGAAGTGAGAAGTGCGAAGTGAGAAGTGDesign primers
188875GTCTCTGC-GTCTCTGC-GTCTCTGCDesign primers
214806CCTTCGCG-CCTTCGCG-CCTTCGCGDesign primers
230017TTTGAAT-TTTGAAT-TTTGAAT-TTTGAATDesign primers
238929CTTGCCA-CTAGCCA-CTAGCCA-CTAGCCA-CTAGCCA-CTAGCCADesign primers
298841CGCGGAGG-CGCGGAGG-CGCGGAGG-CGCGGAGGDesign primers
305566TCCGCGTC-TCCGCGTC-TCCGCGTCDesign primers
305872TCACGGAG-ACACGGAG-ACACGGAG-ACACGGAG-ACACGGAG-ACACGGAGDesign primers
327608ACGCAAAG-ACGCAAAG-ACGCAAAG-ACGCAAAGDesign primers
327686CTTTGCGT-CTTTGCGT-CTTTGCGTDesign primers
366617CGCAGAGG-CGCAGAGG-CGCAGAGG-CGCAGAGGDesign primers
410340AGTGGCT-AGTGGCT-AGTGGCT-AGTGGCT-AGTGGCTDesign primers
421972CTTTGA-CTTTGA-CTTTGA-CTTTGADesign primers
459606TCAAGAG-ACAAGAG-ACAAGAG-ACAAGAG-ACAAGAG-ACAAGAGDesign primers
461490TCACTTC-TCACTTC-TCACTTC-TCACTTCDesign primers
468082CGCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGA-ACCCGADesign primers
468221CCCGAA-CCCGAA-CCCGAA-CCCGAADesign primers
468246CGGAGCCCGAAC-CGGAGCCCGAAC-CGGAGCCCGAAC-CGGAGCCCGAACDesign primers
479657CCTTGCC-ACTTGCC-ACTTGCC-ACTTGCC-ACTTGCC-ACTTGCCDesign primers
482287ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAADesign primers
530138TTTGAAT-TTTGAAT-TTTGAAT-TTTGAATDesign primers
535020TTCATTCGCG-TTCATTCGCG-TTCATTTGCGDesign primers
587058CTCTGTGAC-CTCTGTGAC-CTCTGTGACDesign primers
675519TTCCCAC-TTCCCAC-TTCCCAC-TTCCCACDesign primers
681722ATAATTC-AAAATTC-AAAATTC-AAAATTC-AAAATTC-AAAATTCDesign primers
708826TTCACCC-CTCACCC-CTCACCC-CTCACCC-CTCACCC-CTCACCCDesign primers
715637TACTTCC-AACTTCC-AACTTCC-AACTTCC-AACTTCC-AACTTCCDesign primers
735284ACAGGATTA-ACAGGATTA-ACAGGATTADesign primers
746154CGCCTCC-CGCCTCC-CGCCTCC-CGCCTCC-CGCCTCCDesign primers
778238TTGGCCA-CTTGCCA-CTTGCCA-CTTGCCA-CTTGCCA-CTTGCCA-CTTGCCA-CTTGCCA-CTTGCCA-CTTGCCA-CTTGCCA-CTTGCCADesign primers
790128AAGGCTGAATTCG-AAGGCTAAATTCG-AAGGCTAAATTCG-AAGGCTAAATTCGDesign primers
882321ATTCAAG-ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAADesign primers
913497CTTTTGA-CTCCTGA-CTCCTGA-CTCCTGA-CTCCTGA-CTCCTGA-CTCCTGA-CTCCTGA-CTCCTGADesign primers
927716TGGAAC-CGGAAC-CGGAAC-CGGAAC-CGGAAC-CGGAAC-CGGAAC-CGGAAC-CGGAAC-CGGAACDesign primers
927777CGAGCCCGAGCCCGAACCCGAACCCGAGCCCGAACCCGAACCCGAACCCGAACCCGAACCCGAACCCGAACCCGAGCCCGAACCCGAGCCCGAACCDesign primers
952757AGGGCAA-GTGGCAA-GTGGCAA-GTGGCAA-GTGGCAA-GTGGCAA-GTGGCAA-GTGGCAA-GTGGCAA-GTGGCAA-GTGGCAA-GTGGCAA-GTGGCAA-GTGGCAA-GTGGCAADesign primers
963653CTCTGTGAC-CTCTGTGAC-CTCTGTGAC-CTCTGTGACDesign primers
965311GACTTGC-CACTTGC-CACTTGC-CACTTGC-CACTTGC-CACTTGCDesign primers
997344AAATTCA-AAATTCA-AGATTCA-AAATTCA-AAATTCA-AAATTCADesign primers
997412ACCTTTG-AATTTTG-AATTTTG-AATTTTG-AATTTTG-AATTTTG-AATTTTG-AATTTTG-AATTTTGDesign primers
1023758ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAADesign primers
1039196CGCAAAGG-CGCAAAGG-CGCAAAGGDesign primers
1114873TCTTGCC-ACTAGCC-ACTAGCC-ACTAGCC-ACTAGCC-ACTAGCC-ACTAGCC-ACTAGCC-ACTAGCCDesign primers
1119459GAAGTGA-GAAGTGA-GAAGTGA-GAAGTGA-GAAGTGADesign primers
1220512CGGGTTCGGGCTCGGGCTGAGGTTCCGGTTCGGGCTCGGGCTGAGGTTCCGGTTCGGGCTCGGGCTGGGGTTCCGGTTCGGGCTCGGGCTGAGGTTCCGGTTCGGGCTCGGGCTGGGGTTDesign primers
1260947TTGTCAC-TTCTCAC-TTCTCAC-TTCTCAC-TTCTCAC-TTCTCAC-TTCTCAC-TTCTCACDesign primers
1288504TTTGAAT-TTTGAAT-TTTGAAT-TTTGAATDesign primers
1313251TTGAATC-TTGAATC-TTGAATC-TTGAATC-TTGAATCDesign primers
1325052TACACCCTTCCCAA-TTCACCCTTCCCAA-TTCACCCTTCCCAA-TTCACCCTTCCCAADesign primers
1351333CTCTTGC-CACTAGC-CACTAGC-CACTAGC-CACTAGC-CACTAGC-CACTAGC-CACTAGC-CACTAGCDesign primers
1351414AGCTACT-AGCTACT-AGCTACT-AGCTACTDesign primers
1366242AGGCGTA-AGGCGTA-AGGCGTA-AGGCGTA-AGGCGTADesign primers
1373451GTTCTCA-CTTCTCA-CTTCTCA-CTTCTCA-CTTCTCA-CTTCTCADesign primers
1425970CGTGAGG-CGTGAGG-CGTGAGG-CGTGAGGDesign primers
1454545CCTCTGTGT-CCTCTGTGT-CCTCTGTGTDesign primers
1550079GCCACTA-GCCACTA-GCCACTA-GCCACTA-GCCACTADesign primers
1553493TTGATTTGCGTTGATTCGCGTTCATTTGCGDesign primers
1582267GACTTGC-CACTTGC-CACTTGC-CACTTGC-CACTTGC-CACTTGCDesign primers
1624280CTTTGCGGA-CTTTGCGGA-CTTTGCGGADesign primers
1640845AATTCAA-AATTCAA-AATTCAA-AATTCAADesign primers
1691907CGCGAATGAACGCGAATCAACGCGAATAAADesign primers
2095312GTCAGTG-GTCAGTG-GTCAGTG-GTCAGTGDesign primers
2095535GTCTTCGC-GTCTTCGC-GTCTTCGCDesign primers
2097858GTGTGTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTT-GTGCTTTDesign primers
2102147CGCAGAGG-CGCAGAGG-CGCAGAGGDesign primers
2105906CGCGGAGG-CGCGGAGG-CGCGGAGGDesign primers
2134293ATTCAAC-ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAADesign primers
2172386CACAGAGGG-CACAGAGGG-CACAGAGGGDesign primers
2210128TTTGTGC-TTGGTGC-TTGGTGC-TTGGTGC-TTGGTGC-TTGGTGCDesign primers
2210865TAGTGCT-TGGTGCT-TGGTGCT-TGGTGCT-TGGTGCT-TGGTGCTDesign primers
2232305CTTTGTG-CTTTGTG-CTTTGTG-CTTTGTGDesign primers
2232467GGTCAGG-GGTCAGG-GGTCAGG-GGTCAGGDesign primers
2233291TTCGTCA-GTGGTCA-GTGGTCA-GTGGTCA-GTGGTCA-GTGGTCA-GTGGTCA-GTGGTCA-GTGGTCADesign primers
2250217CGCAAAGGG-CGCAAAGGG-CGCAAAGGG-CGCAAAGGGDesign primers
2253095GATACAA-GATACAA-GATACAA-GATACAADesign primers
2264657TTTGAAT-TTTGAAT-TTTGAAT-TTTGAATDesign primers
2352472CGCAGAGA-CGCAGAGA-CGCAGAGA-CGCAGAGA-CGCAGAGADesign primers
2363703AGTGGCA-AGTGGCA-AGTGGCA-AGTGGCADesign primers
2430456GGCAAGT-GGCAAGT-GGCAAGT-GGCAAGTDesign primers
2561796GAAGTGA-GAAGTGA-GAAGTGA-GAAGTGA-GAAGTGADesign primers
2567214TTTGAAT-TTTGAAT-TTTGAAT-TTTGAATDesign primers
2580513TACATTACGTAATACATTTCGTAATACATTTCGTAADesign primers
2594934CTTGCCA-CTTGCCA-CTTGCCA-CTTGCCADesign primers
2630507ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAA-ATTCAAADesign primers
2662787TCCGGCATGGGCATGGGG-CCCGGCATGGGCATGGGG-CCCGGCATGGGCATGGGGDesign primers
2662842CCGGCATGGGCATGGGAC-CCGGCATGGGCATGGGAC-CCGGTATGGGCATGGGAC-CCGGTATGGGCATGGGACDesign primers
2662915CGGTAT-GGGTAT-GGGTAT-GGGTAT-GGGTAT-GGGTATDesign primers
2676738AATTCAA-AATTCAA-GATTCAA-GATTCAA-GATTCAA-GATTCAA-GATTCAA-GATTCAA-GATTCAADesign primers
2820066GGGCAGT-GGCTAGT-GGCTAGT-GGCTAGT-GGCTAGT-GGCTAGT-GGCTAGT-GGCTAGT-GGCTAGTDesign primers
2834784CAACTGA-CAACTGA-CAACTGA-CAACTGADesign primers
2879389GACGCAGAG-GACGCAGAG-GACGCAGAGDesign primers
2905898AATTCAA-AATTCAA-AATTCAA-AATTCAADesign primers
2905945TTTGAAT-TTTGAAT-TTTGAAT-TTTGAATDesign primers
2924509GGGGGTC-AGGGGTC-AGGGGTC-AGGGGTC-AGGGGTC-AGGGGTCDesign primers
3025908TCTCTGCG-TCTCTGCG-TCTCTGCGDesign primers
3067845AGAGACA-AGAGACA-AGAGACA-AGAGACA-AGAGACADesign primers
3067901CTTGTCT-CTTGTCT-CTTGTCT-CTTGTCTDesign primers
3070459GAAGTGA-GAAGTGA-GAAGTGA-GAAGTGADesign primers
3070501AAACTTC-CTACTTC-CTACTTC-CTACTTC-CTACTTC-CTACTTC-CTACTTC-CTACTTC-CTACTTCDesign primers
3099352GACAAGT-GACAAGT-GACAAGT-GACAAGTDesign primers
3099381GCAAGTG-GCAAGTG-GCAAGTG-GCAAGTG-GCAAGTG-GCAAGTG-GCAAGTGDesign primers
3113530AATTCAAGATTCAAGATTCAAGATTCAAAATTCAAAATTCAADesign primers
3216397AATTCAA-AATTCAA-AATTCAA-AATTCAADesign primers
3242575GGTGTGC-TTTGTGC-TTTGTGC-TTTGTGC-TTTGTGC-TTTGTGC-TTTGTGC-TTTGTGC-TTTGTGCDesign primers
3419439AAGTGGC-AAGTGGC-AAGTGGC-AAGTGGCDesign primers

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