Microsatellites /Tandem Repeats database

Genome: Halothermothrix orenii H 168

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
248063AGTTATATAAAAAGTTATAAAAAAAGTTATATAAAADesign primers
309761GATATTCTTAGATATTCTCAGATATCCTTADesign primers
363433AATAAATCG-AATAAATCG-AATAAATCGDesign primers
425101ATTATTTAAA-ATTATTTAAA-ATTTTTTAAADesign primers
642698ATATGTTACT-TTATGTTACT-TTATGTTACTDesign primers
1539639TTTTATATTAA-GTTTATATTAA-GTTTATATTAADesign primers
1649103CCTTTTCTAAAGAATCACTATATCCTTTTTTAAAGAATCTCTATATCCTTTTTTAAAGAATCACTATATDesign primers
1655983TTATTAATAATTTAC-ATATTAATAATTTAC-ATATTAATAATTTACDesign primers
1702566TATAAATCACATATCAATAATTTAAATCACATATCATTAATATAAATTACATATCAATAADesign primers
1727131TGTTAGATGTTAAATGCTAGATGTTAAATGTTAGATGTTAAADesign primers
1738575ATAACTTATAGTCTTCTAACTTATAGTCTTGTAACTTATAGTCTTDesign primers
1919391ATCTTACAGTAAAAT-CTCTTACAGTAAAAT-CTCTTACAGTAAAATDesign primers
2518250ATTTCTTTATCTCCCATTTGACCATATTACTTTATCTCCCATTTGACTATATTACTTTATCTCTCATTTGACCATDesign primers
2520546TCCTTATATATACTTATATAACCTTATATADesign primers

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