Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Bifidobacterium animalis subsp. lactis AD011

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
933	CGGTGGCGCTGGCAGTGGCGGAGG	Design primers
18005	GGCAGGTGACAATGCTCAGTCTGGTGACAATGCTCAGTCTGGTGACAATGCCCA	Design primers
18763	AAGGCCATGGCCAAGGTCAAGGGC	Design primers
110536	CATGACTATAGCGTGATTATAGCGTGATTATAG	Design primers
110635	CGCAGAGT-TGCAGAGT-TGCAGAGT	Design primers
110660	GCGGATTT-GCGGATTT-GCGGATTT	Design primers
111565	ATGACGATGAAGCTGACGATGGCG	Design primers
152316	GCGGCTCGTCGGGCGGCGCGTCCGGCGGATCGTCGA	Design primers
180123	CGCAGATAG-GGCAGATAG-GGCAGATAG	Design primers
199008	GCGGAGGCA-ACGGAGGCA-ACGGAGGCA-ACGGAGGCA	Design primers
216902	TCGCCGTCCCCGTCGCCTTCACCG	Design primers
241457	ACTGTGCAGACCGCTGCGCAGACCACTGTGCACCCC	Design primers
254773	ACTGTTGTTGCT-GCCGTTGTTGCT-GCCGTTGTTGCT-GCCGTTGTTGCT	Design primers
258590	TTCTCCTTCTTCTTCTTCTTCTCCTCCTCC	Design primers
258673	TTTTTACGCAGACG-GATTTACGCAGACG-GATTTACGCAGACG	Design primers
263649	GTGACATCCCGTAAGCATTGACGACATCCCGTAAGAGTTGGTGACATCCCGTACGCACTG	Design primers
263772	CCTGTTACGGGCCAGCTTGTTACGGGCCAGCCTGCTGCGGGCTAG	Design primers
274114	GCCGAGTCCGAGGCCGAGGCGGAG	Design primers
274348	AATCCCTTACGGGATGTCACCAACTCTTACGGGATGTCGCCATCCATTACGGGATGTCAG	Design primers
278329	CTTCAACTCTTACGGGATGTCGCAATCTCTTACGGGATGTCGCAATCTCTTACGGGATGT	Design primers
278578	GGGATGATGACATCCCGTAAGGGTTGGTGGCATCCTGTAAGGGTTGATGGCCTCCCGTAG	Design primers
281370	ACATCCCGTAACAGATTAGGGTAGCCCGTAACAGATTAGGGTAGCCCGTAACAGATTTGG	Design primers
284775	AG-CG-CG-CG-AG-GG-CG-TG-CG-AG-GG-CG-CG-CG-GG	Design primers
286987	TGACATCCCGTAACGGATAAGGACATCCCGTAAGAGATTATGACATCCCGTAACAGAAAA	Design primers
296325	GCGCGCTAATGCTTACGGGATGTCGTTAATGCTTACGGGATGTCGTTAATGCTTACGGGA	Design primers
299531	GAATCCGAATGCCAATCCGAACCC	Design primers
300222	GAGGACATCGACGAGGATATCGACAACGACATCGAC	Design primers
307024	CGCGGATCTCGTGGATCTCGCGGATCTCCCGGATCT	Design primers
310351	GCAGAAGGAGAAGCAGAAGAAGAA	Design primers
316301	GTGCAGTTCGGCGCAGTTCGATGTAGTTCGACGCAGTTCG	Design primers
324841	GTGCAGTTCGGCGCAGTTCGATGTAGTTCGACGCAGTTCG	Design primers
331804	GAGCGCGGTGGTTGCGCCAG-GGTGCCGGTGGTTGCGCCAG-GGTGCCGGTGGTTGCGCCAG-GGTGCCGGTGGTTGCGCCAG	Design primers
333591	AAGGGGTAGAGGGGGGTAGAGAGGGGTAGA	Design primers
336126	GAAGAAAGG-CAAGAAAGG-CAAGAAAGG	Design primers
341473	GGAATCTCAAGGAATTCCAAGGAATATCAAGGAATATCAA	Design primers
378419	CCGAGGCCGCGGCCGAAGCCGAGG	Design primers
389806	TCGACCTCGACATCCACCTCGACA	Design primers
496357	GGTCGATGTGGTCGACGTCGTCGATGT	Design primers
508974	GATTAGGTGGATTGGGTGGATTGGGTG	Design primers
510852	GCTCGTGCGCGTGCTCATGGTCGT	Design primers
532902	CGACACCGT-GGACACCGT-GGACACCGT	Design primers
542220	AGAGGTCGCGCACAGATCGCGCACAGATCGCGC	Design primers
684731	TCGTCGGCATCGTTGGCATCGGCGGCA	Design primers
804652	TGGATTCAGTGGATTCATTGGATTCTG	Design primers
830413	TCTGCCATCCTCAGCTATCCTCTGCCACCT	Design primers
849749	GTTGATGCAGCTGATGCAGCTGATGCA	Design primers
863100	GTCTTCCGTATCTTCCGTGTCTTCCGA	Design primers
869661	CAGTGCAGATCAGCGCAGCTCAGTGCAGCT	Design primers
932962	GCATCACTTGGACATCACCTGGACATCACTTGG	Design primers
938019	CGATGTCATCGTCGGCGTCATCGTCGGCGTCATCGT	Design primers
949874	ATTACGCAGAGGCGGAGAGATTACACAGCGGCGGGGAGATTACGCATAGCCGGAGAG	Design primers
954033	CGATATTTCAATATTTCAATATTT	Design primers
1006405	CTCTTACC-CTCTTACC-CTCTTCCC	Design primers
1092788	GCGGCGGTGGCGGAGGCGGCGCCGGCGACG	Design primers
1352419	CGCAGATT-GGCAGATT-GGCAGATT	Design primers
1496586	CGTCGGAATCGCCGTCGCAGTCGCCGTCGCAGTCGC	Design primers
1560039	CCACAATGGCCGCAATGGCCACAAGGG	Design primers
1623067	GGATGCTGCGGTTGCTGCGGATGCAGC	Design primers
1819330	ACCGCCACCGTCACCGACACCGTC	Design primers
1920891	GATGCCAACGATGCCGACGATGCCAGC	Design primers
1923279	AGCATCCCCCCGAGCATGCCGCCGAGCTTCCCGCCG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

933

CGGTGGCGCTGGCAGTGGCGGAGG