Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Bacillus cereus G9842

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
9038	ATAATATACTATGATATATTATAAA	Design primers
86980	ACTCGTGTTT-TTTCGTGTTT-TTTCGTGTTT	Design primers
155812	GAAAAG-GAAAAG-GAACAG-GAAAAT	Design primers
190896	GATATAACTA-ATTATAACTA-ATTATAACTA-AATATAACTA	Design primers
426859	GCCTTTAGAGCCATT-GCCACCAGAGCCATT-GCCACCAGAGCCATT-GCCACCAGAGCCATT-GCCACCAGAGCCATT-GCCACCAGAGCCATT-GCCACCAGAGCCATT	Design primers
426965	CCACCAGAACCATTGCCACCAGAGCCATTGCCACCAGAGCCATTGCCACCAGAGCCATTGCCACCAGAGCCATTGCCACCAGAACCATTGCCACCAGAGCCGTTGCCACCAGAGCCGTTGCCGCCAGAACCGTTG	Design primers
427142	CTGCCACCAGAACCGTTACCACCAGAGCCGTTGCCGCCAGAACCG	Design primers
427208	CCAGAACCGTTACCGCCGGAACCATTGCCGCCAGAACCGTTACCACCAGAGCCGTTACCG	Design primers
427298	CCAGAACCGTTACCGCCGGAACCATTGCCGCCAGAGCCGTTACCG	Design primers
427391	GAACCATTGTCGCCAGAGCCACTGCCGCCAGAACCACTGCCGCCAGAACCATTGCCGCCAGAACCGTTGTCACCA	Design primers
429740	GGCGAAGGTGAAGGCGATGACGAA	Design primers
443939	AGATGATGAGATGGTGAAATGATG	Design primers
523067	AGAAAAAGCAAAAGAAAAAGGAAA	Design primers
530282	TCAAAAGAAGAAGTGAAAGAACCAACAAAAGAAGTGGAAGAAACAAAAGAAGAAGTGAAAGAA	Design primers
619976	TTATCCAGCGCCATATCCAGTAACTTATCCATCACCATATCCAGTAACTTATCCATCACCATACCCTGTAAC	Design primers
629300	AATAAGGAATAAAGAAGAAATAAAAAAGGAAGA	Design primers
678135	TATATTCTATTTTCTATTTTCTTTATTC	Design primers
698395	TCTGCTTCTGCATATGCTTTTGCT	Design primers
770636	TTTTTATTTTTTTCTTATTTTTGTT	Design primers
782893	TTGAGCTTTAGCCGCTTCACGAGCTTTAGCTGCTTCTTGAGCCTTAGCCGCTTC	Design primers
782972	TTAGCTGCTTCACGAGCTTCAGCTGCTTCTTGAGCTTTAGCCGCTTCACGAGCTTTAGCTGCTTCTTGAGCC	Design primers
783107	TCTTGAGCTTTAGCTTCTGCTTGAGCTTCAGCATCTGCCTGAGCTTTAGCTGCTTCTTGAGCCTTAGCTGCT	Design primers
860143	CCGGAAAAACCAGGTGAAGGAACAGAAAAACCAGGTGAAGGAACAGAAAAGCCGGGTGAAGGAACAGAGAAGCCAGGTGAAGGAACAGAGAAGCCAGGTGAAGGAACAGAGAAGCCAGGTGAAGGAACAGAAAAGCCGGGTGAAGGAACAGAAAAGCCAGATGAAGGA	Design primers
948306	AACCTAAACAAGAAAACACTAAACAGGAAAACACTAAACAAGAAC	Design primers
948850	AC-AG-AG-AT-AG-AG-AC-AG-AG-AC-AA-AG	Design primers
955205	TCTTGAAGAAAAATCAGTGACGCTTAAAGAAAAACCAGCGACTCTTAAAGAAAAAACAATGAC	Design primers
990122	GTTCGTAATTCTTCTGCTTGCATTTGTAGTTCTTCCGCTTGCGTTTGCAATTCTTCTGATTGA	Design primers
1045478	TCCAGAAACACCAGATCCAGAAAA-GCCTGGAACACCAGATCCAGAGAA-ACCTGGAACACCAGATCCAGAGAA-ACCTGGAACACCAAATCCAGAAAA-ACCTGGAACACCAGATCCAGAGAA	Design primers
1045599	CCTGGAACACCGAATCCAGAAAAACCTGGAACACCAGATCCAGAGAAACCTGGAACACCGAATCCAGAAAAACCTGGAACACCAGGTCCAGAAAAGCCTGGAACACCGGGTCCAGAAAAA	Design primers
1051248	TGTGCTTGTCCTTCTGCTTGTGCA	Design primers
1173446	TCCAGTCGGTCCAGTAGCCCCCGTAGGTCCAGTAGCTCCCGTAGGTCCGGTAGC	Design primers
1173501	CCAGTAGCC-CCAGTAGCC-CCAGTAGCC	Design primers
1173783	CCAGTAGGTCCGGTAGGCCCCGTAGGTACAGTAGGCCCGGTAGGTCCGGTAGGTCCAGTAGGCCCGGTAGGC	Design primers
1181971	AGAACAAGAACAACAAGAACAACAAGAACAACAAGA	Design primers
1207751	TTTCGGTTCTTTTGGTTCTTGCGGTTC	Design primers
1233127	GAAGCGGAAGGACAAAAGAAAGCCGAAGGACAAAAGAAAGCCGAAGAACAAAAG	Design primers
1233182	AAGTAGAAGAACAGAAGAAAGCCGAAGAACAAAAGAAAGTAGAAGAACAAAAGAAAGTAGAAGAACAGAAGAAAGTAGAAGAACAGAAGAAAGTAGAAGAGCAAAAGAAAGCCGAAGAACAGAAAA	Design primers
1248820	TTCTTCAGCAGGCTTTTGCTCAGCAGGTTTTTGCTCAGCAGGTTT	Design primers
1422913	AAATATTT-AAATATTT-AAGTATTT	Design primers
1424673	AAAAATAAAATAAAAATAAAAAAGA	Design primers
1473702	TTGTTTCTTAGCTTCGTCTTCAGCTTTTTTCTTGGCCTCTTCTTCAGCTTTCTTCTTAGCTTCGTCTTCAGCTTTTTTCTTAGCTTCGTCTTCAGC	Design primers
1473851	GTTGTTGTTCTTGTTGCTGCTGTTCTTGTT	Design primers
1473955	GCTTCCTCATCAGCTTTTTTCTTAGCTTCTTCATCGGCCTTTTTCTTAGCCTCTTCATCAGCTTTTTTCGCA	Design primers
1563929	GAAGAGAAACAAAAAGAAGTAGAACAAAAAGAAGTAAAACAACAA	Design primers
1572739	TTTTTATA-TTTTTATA-TTTTTCTA	Design primers
1624157	CAGATG-AAGATG-AAGATG-AAGATG	Design primers
1651050	AAGAAAAGGAAAGAAAAGCAAAGCA	Design primers
1654507	TTATT-AAATT-ATATT-TAATT-AAATT-AAATT	Design primers
1668134	TTGTAGGTTTTTGTATGATTTTGTAGGTTC	Design primers
1672960	TATTTTTCTTTTTATTATTATTTT	Design primers
1686621	ATTATAAATTTTAAGTTATAAATTATAA	Design primers
1834411	AAATAA-CAATAA-CAATAA-CAATAA-CAATAA	Design primers
1982259	AATA-AATA-AATG-AATA-AATA-AATA	Design primers
2052991	TATAATCGCTGATATATCTTGAAAATCGCCGATATATTTTAAGAATCGCTGATATATTTA	Design primers
2109695	TTTATTTTCTTTTCTTTTCTTTTAG	Design primers
2169114	CAAGAAGAATTAAAGAAACAAGAAGAACTGAAAAAACAAGAAGAACAAAAGAAA	Design primers
2169180	AAGAAGCAAGAAGAACAAAAGAAACTAGAAGAGCAAAAGAAACAAGAAGAAGAAAAGAAACAAAATGAACAA	Design primers
2189270	GGATTAGCATTAGGACTAGGATTA	Design primers
2259133	AAACCAGTACTTCCGGTAGGCCCAGTACTTCCGGTAGGTCCAGTACTTCCGGTA	Design primers
2259624	CAACCGGAGAAACGGGACCGACCGGAATAACGGGACCGACCGGAATAACGGGAC	Design primers
2259750	CGACCGGAATAACGGGACCGATCGGAATAACGGGAG-CAACCGGAGAAACGGGACCGATCGGAATAACGGGAG-CAACCGGAGAAACGGGACCGACCGGAATAACAGGTT-CAACGGGAATAACGGGAC	Design primers
2261290	CAACAGGTCCAACAGGCCCAACAGGTCCAACAGGTC	Design primers
2261339	AACAGGTCCAACAGGCCCAACAGGTCC	Design primers
2261386	CAACGGGAGCAACAGGAGCAACAGGAG	Design primers
2261440	CAACAGGTCCAACAGGCCCAACAGGTC	Design primers
2261468	AACAGGAGCAACAGGCTT-AACAGGAGCAACAGGCTT-AACAGGAGCAACAGGCTT-AACAGGAGCAACAGGTCC	Design primers
2261548	TAACAGGAG-CAACAGGTC-CAACAGGTC-CAACAGGTC-CAACAGGAG-CAACAGGAG-CAACAGGAG-CAACAGGAG	Design primers
2344702	CCTTTATCTTA-TCTTTATCTTA-TCTTTACCTTA	Design primers
2370562	TATACTTAATATATTGTTAATATATACTTAATT	Design primers
2432443	ATAATTTGTAATTTATAATATATAATTA	Design primers
2446114	TT-TT-TA-AA-TA-TT-TC-TA-AA-GA-TA-TT-TA-TA-TA	Design primers
2471176	GGCGGTTGTGGCGGAGGTCGTTGTGGCGGATTCCGTTGTGGCGGA	Design primers
2471298	TGGTACTACTGATACTACTGGTACTAT	Design primers
2479911	TACAGAGATTACTACAAATATTACTACAGAGATTAC	Design primers
2619984	GA-AA-AA-GA-AA-GA-GA-AA-TA-GA-AA-CA	Design primers
2684643	CAATCCCAATTATAATCCCAATCACAATTCCGATTA	Design primers
2706032	CAAATACAAGTACAACTACAACTA	Design primers
2755298	ATATATATAATATAAATATATAACTTATAAATATATATAATATAT	Design primers
2807436	GAATCCTGATTTATTGGCTCAGAAACCTGTTTTTTTGGTTCACAATCCTTTTTTATTGGCTCA	Design primers
2881996	TCTTTTTCTTCTTCTTTAACTTTT	Design primers
2882149	TCTTCTTTAACTTTTACTTCTTCTTTGACTTTTGCCTCTTCTTTAGGCTTTACT	Design primers
2882293	TCTTCTTTAACTTTTACTTCTTCTTTGACTTTTGCCTCTTCTTTAGGCTTTACT	Design primers
2931539	TAGCTTTTTATATTTTTTTATATTTTTTTA	Design primers
2948365	GGAAATGAAAATGGAAAATGAAAT	Design primers
2975251	TACAG-TTAAG-TTAAG-TTAAG-TTAAG-TTAAG	Design primers
3065212	TCTCTTCTT-TCTCTTCTT-TCCCTTCTT	Design primers
3133633	TTTGTTTGT-TTTGTTTGT-TTCGTTTGT	Design primers
3226080	CTGGTGGTACTG-GTGGTGGTACTG-GTGGTGGCACTG	Design primers
3264926	TTCCTGTTGCTCCTGTTGCTCCTGTCGCCCCTGTTGCCCCTGTTGCTCCTGTCG	Design primers
3266550	ATTCCTTGTATACCTTGTATTCCTTGC	Design primers
3267701	TACTCCTTGTATTCCTTGAACTCCTTG	Design primers
3268038	CCTTGTATTCCTTGTATGCCCTGTATT	Design primers
3274108	TTCTCTTCCTCTTCCTCTTTCACT	Design primers
3468421	AATCCATATGATCCATATAATCAATAT	Design primers
3630594	TTTGTATATTAGTATTTCGTTTATTAGTAGTTATTCTATTAGTAT	Design primers
3642339	GGTGCTACTGGTGCCACTGGCGCTACT	Design primers
3650469	CAACCATAAACAATCAAAAATAATCATAAACATTCATAAA	Design primers
3722465	TGCTCCTCTTTCTTTGGTTCTTCTTTCTTTAGTTCTTCTTTCTTTGGCTCTTCTTTCTTT	Design primers
3777687	GTT-CTT-CTT-GTT-GTT-GTT-CTT-TTT-CTT-CTT-CTT-TTT	Design primers
3945377	AAAAAATAAACAAAATAAAAAACAA	Design primers
3980293	TCACAACCACAATCTCAATTACAA	Design primers
4023026	GTATATTTTTTGAACATTTTTTGAATATTTATT	Design primers
4100238	GTTGTGGTA-TTTGTGGTA-TTTGTGGTA-TTTGTGGTA	Design primers
4158525	TCTTTTTTACTTGTTTCTTTTTTAGTATTTTCTTTTTTGTCTGTTTCTTTATTTGTTGTT	Design primers
4178895	TTCTCATTCTCGTTATCATTTTCA	Design primers
4186027	CAGAAAATG-AAGAAAATG-AAGAAAATG	Design primers
4239752	CCGCAGCAATATCAACAGCAATATCAGCAGCAATACCAGCAACAATATCCTCAGCAACAT	Design primers
4240161	AAAAGAAACGAAAACGAAAGAAAAT	Design primers
4320682	TTCTTCTTCAGCTTTTTTCTTTTCTTCCTCAGCCTTTAACTTCTCTTCTTCAGCTTTTTGCTT	Design primers
4442109	TTATCTTTATCCTTATTTTTATCA	Design primers
4443442	TATTATATTTTAATATATAATATAA	Design primers
4476646	GGGTTATTATTTCCACCT-TGGTTGTTGTTTCCACCT-TGGTTGTTGTTTCCACCT-TGGTTGTTGTTTCCACCT	Design primers
4476719	GGTTGTCGTTTCCACCTT-GGTTGTCGTTTCCGCCTT-GGTTGTCGTTTCCGCCTT-GGTTGTCGTTTCCGCCTT-GGTTGTCGTTTCCACCTT	Design primers
4477219	TTGTTTCCACCTTGATTGTCGTTTCCGCCTTGGTTGTTATTTCCGCCTTGATTGTCGTTTCCACCTTGGTTGTTGTTTCCGCCTTGGTTGTTATTTCCACCTTGGTTGTTGTTTCCGCCTTGATTGTCGTTTCCACCTTGGTTA	Design primers
4477753	TTTTCATCTGGTTTT-TCTACTTCTGGTTTT-TCTACTTCTGGTTTT-TCTACTTCTGGTTTT-TCTACTTCTGGTTTT-TCTACTTCTGGTTTT	Design primers
4647976	CCTGTCGCTCCTGTTGCTCCTGTAGCT	Design primers
4658456	TGACCGTGT-TGACCGTGG-TGACCTTGG-TGACCTTGG-TGACCTTGG-TGACCTTGG-TGACCTTGG-TGACCTTGG-TGACCTTGG-TGACCTTGG	Design primers
4658547	GACCTTGGTGGCCTTGGTGGCCTTGGT	Design primers
4658575	GCCGTGATG-GCCTTGATG-ACCTTGATG-GCCTTGATG-GCCTTGATG-GCCTTGATG-GCCTTGATG-GCCTTGATG-GCCTTGATG-GCCTTGATG	Design primers
4735281	TTCTCTTTTTCTCTTCTTCACTTT	Design primers
4843408	GATTCTCTTTAC-CTTTCTCTGTAT-CTTTCTCTGTAT-CTTTCTCTGTAT-CTTTCTCTGTAT-CTTTCTCTGTAT	Design primers
4997058	GATGCTGTTGCTGATGCGGATCCT	Design primers
5034659	AGAAAT-AGACAT-AGACAT-AGACAT-AGACAT	Design primers
5056128	TTTAGGTGCCTCTTTTTTAGGTTCTTCCTTTTTAGGTTCTTCTTTTTTAGGCTCTTCTTT	Design primers
5136353	TCTTGTTTTTTCTCTTCCTTTTTCTCTTCTTTCTTC	Design primers
5153945	TTCTTTTCTATACTTTTGTTTTGTT	Design primers
5308251	AGAAAAACATCGAAGAACATAGAAAATTAT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

9038

ATAATATACTATGATATATTATAAA