Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Shewanella baltica OS223

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
59858	TTACTGTTGTTATGCGTTAAGTTACCAATGCTATGCGTTAAGCTTCTGGCGTTATGCGTTAAG	Design primers
87240	CAGTGTATCGGTGTATCAATGTAT	Design primers
346323	AGGTTTGATGACT-TGGCTTGATGACT-TGGCTTGATGACT-TGGCTTGATGACT-TGGCTTGATGACT	Design primers
363517	CAACTCAC-TAACTCAC-TAACTCAC	Design primers
382065	TGCACCATAATCAGCTCCATAATCAGCTCCATAATC	Design primers
534586	TTAAGCGGGTAATTTTTAGGCAGGTGATTTTTAAGCGGGTGGCTT	Design primers
553285	AAAAATCTAATTGATAAAAACTTCATTGATAAAAATCTAATTGAC	Design primers
655239	ATATTTATTAGCCTATTTACTAGCTTATTTATTAGC	Design primers
667871	CCAGTACGGCCAGCACGGCCTGTACGGCCAATACGG	Design primers
670152	TAGGTTTATACTGCTTGGGCTTATACCGCTTAGATTTATGCCGCT	Design primers
738239	ATTAATGCTTTAAATAATGTTTTAAATAATGCTTTA	Design primers
748444	ATTTTTG-TTTGTTG-TTTGTTG-TTTGTTG-TTTGTTG-TTTGTTG	Design primers
752404	CTAAGCCCTTTAT-ATAAGCCCTTTAT-ATAAGCCCTTTTT	Design primers
753176	TATCTG-TTTCTG-TTTCTG-TTTCTG	Design primers
781507	ACTATGTTTACACGAACGCTGTTTACACAAACGATGTTTATACAA	Design primers
810842	TATGGGCGGTATGGGTGGCATGGGCGGAATGGGCGG	Design primers
814683	TGGCTTTGGGGTTTAGTTGCTGTGGGGTTTAGTTACTTTGCGGTTTAG	Design primers
844325	AAACTGTT-AGAGCGTT-AGAGCGTT-AGAGCGTT-AGAGCGTT-AGAGCGTT	Design primers
844374	GAGCGTTA-AAGCGTTA-AAGCGTTA-AAGCGTTA	Design primers
970471	AACCGCAACAAGCTAAGCAACAACAAGCTAAACCGCAAAAAAATA	Design primers
998736	GAACTGTTGTTTGTGGAGCTGTTGTTTGCAGAGTTGTTTTTTGTG	Design primers
1001669	TTTGCTTAAGCTCAGTTTGCTTAAGTTCTATCTGCTTAAGTTCTG	Design primers
1002940	CACTT-AACTT-AACTT-AATTT-AACTT-AACTT	Design primers
1008878	TCGCAATCTCAATCACAATCACAA	Design primers
1008903	CTCAGT-CTCATC-CTCAGC-CTCAGC-CTCAGC-CTCAGC	Design primers
1011256	ATGCTCGA-ATGCTCGA-ATGCTTGA	Design primers
1030587	GCTGATATTTAGGCCGACATTTAGATTGATATTTAG	Design primers
1055800	CAAACTTAAACTCAAAATCAAACG	Design primers
1126078	CTATGCTCAAACACTATATTCAAACACTATATTCAAACA	Design primers
1139736	CGCGGCC-TGCGGCC-TGCGGCC-TGCGGCC	Design primers
1142016	ATTGTTATC-TTTGTTATC-TTTGTTATC	Design primers
1157803	AATGCAGCTTAAGTG-ACTGTAGTTTAAGTG-ACTGTAGTTTAAGTG-ACTGTAGTTTAAGTG	Design primers
1157864	CTGGAGTTTAAGTTACTGGAGCTTAAGTTACTGGAGCTTAAGTGA	Design primers
1192526	GCAGAGCTAAAACAGCAGAACTAAAACAGCAGAGCTTGAACA	Design primers
1228751	TTTCGGCGATATTTTCGGTGATGTCTTTGGCGATAT	Design primers
1255647	AAGACT-CAGACT-CAGACT-CAGACT	Design primers
1278169	ATTAAGTACCTCTAAATTTAAGTGCTTCTAAATCTAAGTGCCTCTAAA	Design primers
1295949	ACACAGTAACTAT-GAACAGTAACTAT-GAACAGTAACTAT	Design primers
1302636	CTAATGTGAGTGCTGTGCCCAATGTAAATGCTGTGCCCAATGTAAATGCTGTGC	Design primers
1312501	TGCTCAGAAACACACCGCTCTGAAACAAACGGCTCAGATGCACAC	Design primers
1379311	TTCAGA-CTCAGA-CTCAGA-CTCAGA-CTCAGA	Design primers
1423670	GAGTGATTGAAAGTTATTGATTGAAAGTGAGTGATTAAACGT	Design primers
1438977	TATTGTTTAGAAA-CATTGTTTAGAAA-CATTGTTTAGACA-TACTGTTTAGAAA	Design primers
1497242	ATAAATTAGCTTGATAAATCAGCTTGAAAAACTAGCTTGATAAATCAGCTTGAAAAACTAGCTTGATAAATCAGCCTG	Design primers
1504150	TTATGACTGGACATTATGAGTGAACACTATGACTGGGCATTATGAGTGAACA	Design primers
1529285	TTCGTATTTAAGAGCTCATATTTAAGAGTTCATATTTAACAGTTCGGATTTAAAAG	Design primers
1542416	CATTCAA-TACTCAA-TACTCAA-TACTCAA-TACTCAA-TACTCAA	Design primers
1593841	TAATCACTTGCTCAATGACTTGCTTAATCGTTTGCT	Design primers
1602174	CCCGTAGCTCAACAAACTGTAGTTCAACAACCTGTAGCTCAACAG	Design primers
1707502	TTTAGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC-CTGCGTTGC	Design primers
1748081	AGCACCAGCAGCAGTACCAACACC	Design primers
1770439	TGTTTCTCAGTCACAGTGTTTATGAGTCACATTGCTGCTGAGTCACAG	Design primers
1848708	TAACTCTTAAGTCTTAACTATTAACTAT	Design primers
1916203	TCAATA-CCTAAA-CCTAAA-CCTAAA-CCTAAA-CCTAAA-CCTAAA-CCTAAA-CCTAAA	Design primers
1917220	CATGCTGTC-TATGCTGTC-TATGCTGTC	Design primers
1919142	GGCTTACAAAACTAGGGCTCACAGAACTAGCGCTCACAGAACTAG	Design primers
1958406	AAATTAAACTAAAGTTAATTAATTT	Design primers
2029378	GTTAAG-GTTAAG-GCTAAG-GCTAAG	Design primers
2039724	GTTAGCTATGAATATTGGCTATGAATATTGGCTATGAAT	Design primers
2058098	CATTTAGTAACTGAAAATTTAGTAACTGAAGATTCAGTAATTGAA	Design primers
2078516	TTGCTGAAACACATACAGCTGAACCACATACAGCTGAACCACATA	Design primers
2079270	TGTTCAACACTCAGCTAATGTTCAACACTCAGATAGTGTTCAACATTCTGCTGA	Design primers
2212148	AATTTCAGCTAATAACTAATTTCAGTTAAAAACTAAGTTCAGTTAAAAACT	Design primers
2236930	TCAGGCAAAAAGACTCAGGCATAAAGGCTCAGGCAAAAAGAC	Design primers
2380786	TTATCGTTTGAGTTAGCGTTTGAGTTAGCGTTTGTG	Design primers
2384058	CCAGACTTAAACCCAGACATAGACCCACACTTAAAC	Design primers
2398971	AGTTCTGGAAATTCTGGAAATTCTGGA	Design primers
2400520	TTCGCAC-TAAGCAC-TAAGCAC-TAAGCAC-TAAGCAC-TAAGCAC	Design primers
2439775	ATGGCGT-TTGGCGT-TTGGCGT-TTGGCGT-TTGGCGT	Design primers
2473798	GCAGAG-CATGAG-CATGAG-CATGAG-CATGAG-CATGAG-CATGAG-CATGAG-CATGAG	Design primers
2574744	TTATTTACA-GTATTTACA-GTATTTACA-GTATTTACA-GTATTTACA	Design primers
2575238	TACTATGGTTGA-AACTATGGTTGA-AACTGTGGTTGA	Design primers
2678239	AACATTAA-ACCATTAA-ACCATTAA-ACCATTAA-ACCATTAA	Design primers
2696207	GCTGTTGATAGTTGATGATAGTTGATGATA	Design primers
2711641	ATAAACTGAGTTGATAAATTGAGTTAATACACTGATTTG	Design primers
2746653	TCTAAG-ACTAAG-ACTAAG-ACTAAG-ACTAAG	Design primers
2811709	TCCATGAA-GTAATGAA-GTAATGAA-GTAATGAA-GTAATGAA-GTAATGAA	Design primers
2833203	AAGTTCTTTTTATTCCAGCTCTTTTTATTCAAGTTCTGTTCGTTCAAGTTCTTTTCGCTC	Design primers
2842201	AGCTAATACTCTGGACTAATACTCTGAGCTAATACCATG	Design primers
2854021	ACAATCTTGTAAGCAATCTTCTAAACAATCTTGTAA	Design primers
2885606	CATGATCACGGTCATGATCATGATCATGATCATGGC	Design primers
2938826	AGTACTTTGATCGGTACTTTAATCAGTACTGTGATC	Design primers
2952332	TCGCGAT-TAGTGAT-TAGTGAT-TAGTGAT-TAGTGAT-TAGTGAT	Design primers
2952469	ACCAAAGTTAAAAACCATAGTTAAACGCTAAAGTTAAAA	Design primers
2967463	ATGGCGCCTAAATGTGGCGCCTATATATGGCACCTAAATGTGGCACCTAAAT	Design primers
3024079	GGCTTTGGCTTCAGCATCGGCTTTGGCCTTAGCATCCGCTTTAGCTTTAGCATCTGCTTTGGCTTTAGCTTCGGCTTTCGCATCTGCATC	Design primers
3029263	AGGTTG-AAGTTG-AAGTTG-AAGTTG-AAGTTG	Design primers
3069170	AAATGCTTGATCAATGTTTGATGGATGCTTGAT	Design primers
3069251	CTTAACGTATAAGCTTAACGCATAGGCTTAACGTATAAG	Design primers
3139317	GACTTTTCAATGGACTTCCCAATGAACTTTACAATG	Design primers
3231639	TCACGAC-TAAGTTC-TAAGTTC-TAAGTTC-TAAGTTC-TAAGTTC-TAAGTTC-TAAGTTC-TAAGTTC	Design primers
3255675	CTGACGA-CTGACCA-CTGACCA-CTGACCA-CTGACTA	Design primers
3267428	ACTAATATCTCAAGTGACTAATATCTCGAGCGGCTAATATATCAAGAGACAAATATATCAACTG	Design primers
3283551	ACTATTTC-TCTATTTC-TCTATTTC	Design primers
3288579	GCTTGAGTTGCTTGAGTCACTTGAGTT	Design primers
3313894	GACTGACTTATC-GATTCACTTATC-GATTCACTTATC-GCCTTACTTATC-GACTCACTTATC	Design primers
3328355	AAATCAGTGGTTCAATCAATGGTTAAATCAATGCTT	Design primers
3362538	TGAGTAACTATATTGAGTCGCTATATTGAGTCACTATAT	Design primers
3374269	CACCTGGCACACCAGGTACACCCGGAACACCAGGCACTCCCGGAACACCAGGTA	Design primers
3381044	GGTTTG-GGTTTG-GATTTG-GGTTTG	Design primers
3385922	TAAACTTTTGCTT-TAGCCTTTTGCTT-TAGCCTTTTGCTT-TAGCCTTTTGCTT-TAGCCTTTTGCTT-TAGCCTTTTGCTT	Design primers
3391889	TCCTACTTTCCTGCTTTCCTACTA	Design primers
3392345	TAACGTCTGATTGAGTAACGTCTGATTGAATCACGTCCAATTGAG	Design primers
3448415	GCGTCAAACAGCGCATCAAAAAGCGCGTCAAAAAGCGCGTCAAAAAGCGCGTCAAAAATC	Design primers
3456927	TTTGAGTTAGCACCTAATTTAAACTTGAGTTAGAACCTAATTTAAACTTGAGTTAGAACCTGATTTCAA	Design primers
3464731	GAAGCGATAGTACCTTAAGCGATAACACCTTAAGCAATAGTGCCT	Design primers
3509708	TTCACCGACAGTGCCTTTATCGACAGCGCCTTTATCGACAGCGCC	Design primers
3516721	ATGTGCAAA-CGGAGCAAA-CGGAGCAAA-CGGAGCAAA-CGGAGCAAA-CGGAGCAAA	Design primers
3522956	ACATTAGTCACTAACATTAGTCACTCACTTTAATCACTA	Design primers
3541480	ACATTCATGGC-GGATTAATGGT-GGATTAATGGT-GGATTAATGGT-GGATTAATGGT-GGATTAATGGT-GGATTAATGGT-GGATTAATGGT	Design primers
3571317	TTGGGCTTAGCTTATTTTGGCTTAACTTATTTAGACTTAGCTCAT	Design primers
3749090	GATGAAGATGACGAAGAAGATGAC	Design primers
3771398	GCTAAGCTACAGGCAACTAAGCAGCAGGCAACTAAGCAACAGGCA	Design primers
3804523	AAAACTAATACTGTACAAAACTAATACTGTTTAAAATTAGTGCTGTAC	Design primers
3855055	ATATGACTATCGCTAAATGACTAGCGCTATATGACTAATGCT	Design primers
3872002	TGCGCTTAGTCATAGTACGCTTATTCACAGTCCGCTGAGTCAAAG	Design primers
3874677	TACCGATTAGTTA-ACCCGATTAGTTA-ACCCGATTAGTTA	Design primers
3878794	AAAATGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG-CTGGTGAG	Design primers
3896172	AATGCTTAGCTTT-TGTGCTTAGCTTT-TGTGCTTAGCTTT	Design primers
3898078	TACTAAG-TTCTAAG-TTCTAAG-TTCTAAG	Design primers
3968354	AAACCGCATTAACTTAAGCCGCATTCACTTAAGTCGCGTTAACTT	Design primers
4007459	CTTCAATTCAAACACTGGTTCAATTCAGACACAGGTTGAATTGAAACACTG	Design primers
4030706	CTAATAAAAACTGAAAAAAACAACTAAAAA	Design primers
4088130	AGGTGTTAGTTAAGTGTTAGCTGGGTGCTAGTT	Design primers
4088216	GTTAGTCAGTTGCTATTT-ATTAGTCAGTTGCTATTT-ATTAGTCAGCCGCTATTT	Design primers
4158794	CCCTAAACTTCAGCCTTAAACTCCAGCGTTAAACTTCAGCCTTAAACTCCAGCGTTAAACTTCAG	Design primers
4192098	GCTTTAA-TGCTAAA-TGCTAAA-TGCTAAA-TGCTAAA-TGCTAAA-TGCTAAA-TGCTAAA-TGCTAAA-TGCTAAA-TGCTAAA-TGCTAAA-TGCTAAA-TGCTAAA-TGCTAAA-TGCTAAA-TGCTAAA-TGCTAAA	Design primers
4213761	TGTTCCGTCACTAATAGTTACGTCGCTAATAGTTCAGTCACTAAC	Design primers
4251319	ATTTATAAATCAAAGCTATAAATCAAAGTCATAAATCAA	Design primers
4278310	CTGTGGA-TTGTGGA-TTGTGGA-TTGTGGA	Design primers
4293555	CTGAGTTAAAT-CTGAGTTAAAT-CTGAGCGAAAT	Design primers
4364133	ACTCAAATTCAACTCAAGCTCAACTCAAGCTCA	Design primers
4500059	CAAATAA-CGGATAA-CGGATAA-CGGATAA-CGGATAA-CGGATAA	Design primers
4544890	CTGCTACTTAATAGACAGCTACTTAATTGGAAGCGACTTAATAGA	Design primers
4705764	CATTTGGATTCCATTGGGAGTCCTTTTGGAGTC	Design primers
5057678	GCGCCGCCTGTACCTGTTCCACCACCTGTACCTGTTCCACCACCTGTACCTGTTCCACCACCTGTACCTGTTCCGCCACCTGTGCCTGTT	Design primers
5057769	CACCACCTGTGCCAGTTC-CGCCACCTGTGCCTGTTC-CACCACCTGTGCCTGTTC-CACCACCTGTGCCTGTTC-CACCACCTGTGCCTGTTC-CACCACCTGTGCCTGTTC-CACCACCTGTGCCAGTTC-CGCCGCCGGTGCCAGTTC-CACCACCTGTACCTGTTC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

59858

TTACTGTTGTTATGCGTTAAGTTACCAATGCTATGCGTTAAGCTTCTGGCGTTATGCGTTAAG