Microsatellites /Tandem Repeats database

Genome: Shewanella baltica OS223

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
346324GGTTTGATGACTT-GGCTTGATGACTT-GGCTTGATGACTT-GGCTTGATGACTT-GGCTTGATGACTTDesign primers
363518AACTCACT-AACTCACT-AACTCACTDesign primers
699457AAATAAAAAT-TAATAAAAAT-TAATAAAAATDesign primers
738241TAATGCTTTAAATAATGTTTTAAATAATGCTTTAAADesign primers
748445TTTTTGT-TTGTTGT-TTGTTGT-TTGTTGT-TTGTTGT-TTGTTGTDesign primers
752405TAAGCCCTTTATA-TAAGCCCTTTATA-TAAGCCCTTTTTADesign primers
753178TCTGTT-TCTGTT-TCTGTT-TCTGTTDesign primers
844329TGTTAGAG-CGTTAGAG-CGTTAGAG-CGTTAGAG-CGTTAGAG-CGTTAGAGDesign primers
844378GTTAAAGC-GTTAAAGC-GTTAAAGCDesign primers
1002941ACTTAACTTAACTTAATTTAACTTAACTTADesign primers
1008914CCTCAG-CCTCAG-CCTCAG-CCTCAGDesign primers
1142017TTGTTATCT-TTGTTATCT-TTGTTATCTDesign primers
1157808AGCTTAAGTGACTGTAGTTTAAGTGACTGTAGTTTAAGTGACTGTDesign primers
1255648AGACTC-AGACTC-AGACTC-AGACTCDesign primers
1295950CACAGTAACTATG-AACAGTAACTATG-AACAGTAACTATGDesign primers
1379312TCAGAC-TCAGAC-TCAGAC-TCAGACDesign primers
1542417ATTCAAT-ACTCAAT-ACTCAAT-ACTCAAT-ACTCAAT-ACTCAATDesign primers
1707505AGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTG-CGTTGCCTGDesign primers
1916206ATACCT-AAACCT-AAACCT-AAACCT-AAACCT-AAACCT-AAACCT-AAACCTDesign primers
1917221ATGCTGTCT-ATGCTGTCT-ATGCTGTCTDesign primers
2398973TTCTGGAAA-TTCTGGAAA-TTCTGGAAADesign primers
2400522CGCACTA-AGCACTA-AGCACTA-AGCACTA-AGCACTA-AGCACTADesign primers
2439776TGGCGTT-TGGCGTT-TGGCGTT-TGGCGTT-TGGCGTTDesign primers
2473800AGAGCA-TGAGCA-TGAGCA-TGAGCA-TGAGCA-TGAGCA-TGAGCA-TGAGCADesign primers
2574745TATTTACAG-TATTTACAG-TATTTACAG-TATTTACAGDesign primers
2575239ACTATGGTTGAA-ACTATGGTTGAA-ACTGTGGTTGAADesign primers
2678241CATTAAAC-CATTAAAC-CATTAAAC-CATTAAAC-CATTAAACDesign primers
2696209TGTTGATAGTTGATGATAGTTGATGATAGTDesign primers
2746654CTAAGA-CTAAGA-CTAAGA-CTAAGADesign primers
2811711CATGAAGT-AATGAAGT-AATGAAGT-AATGAAGT-AATGAAGT-AATGAAGTDesign primers
2952336GATTAGT-GATTAGT-GATTAGT-GATTAGT-GATTAGTDesign primers
3029265GTTGAA-GTTGAA-GTTGAA-GTTGAADesign primers
3231644ACTAAGT-TCTAAGT-TCTAAGT-TCTAAGT-TCTAAGT-TCTAAGT-TCTAAGT-TCTAAGTDesign primers
3328362TGGTTCAATCAATGGTTAAATCAATGCTTCAATCAADesign primers
3362544ACTATATTGAGTCGCTATATTGAGTCACTATATTGAGTCDesign primers
3385925ACTTTTGCTTTAG-CCTTTTGCTTTAG-CCTTTTGCTTTAG-CCTTTTGCTTTAG-CCTTTTGCTTTAG-CCTTTTGCTTTAGDesign primers
3448424AGCGCATCAAAA-AGCGCGTCAAAA-AGCGCGTCAAAA-AGCGCGTCAAAADesign primers
3516725GCAAACGGA-GCAAACGGA-GCAAACGGA-GCAAACGGA-GCAAACGGADesign primers
3541482ATTCATGGCGG-ATTAATGGTGG-ATTAATGGTGG-ATTAATGGTGG-ATTAATGGTGG-ATTAATGGTGG-ATTAATGGTGG-ATTAATGGTGGDesign primers
3771406ACAGGCAACTAAGCAGCAGGCAACTAAGCAACAGGCAACTATGCADesign primers
3874678ACCGATTAGTTAA-CCCGATTAGTTAA-CCCGATTAGTTAADesign primers
3878796AATGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCT-GGTGAGCTDesign primers
4192100TTTAATG-CTAAATG-CTAAATG-CTAAATG-CTAAATG-CTAAATG-CTAAATG-CTAAATG-CTAAATG-CTAAATG-CTAAATG-CTAAATG-CTAAATG-CTAAATG-CTAAATG-CTAAATG-CTAAATG-CTAAATGDesign primers
4251321TTATAAATCAAAGCTATAAATCAAAGTCATAAATCAAAGDesign primers
4278311TGTGGAT-TGTGGAT-TGTGGAT-TGTGGATDesign primers
4500061AATAACG-GATAACG-GATAACG-GATAACG-GATAACG-GATAACGDesign primers
5057681CCGCCTGTACCTGTTCCACCACCTGTACCTGTTCCACCACCTGTACCTGTTCCADesign primers
5057744CCTGTTCCGCCACCTGTG-CCTGTTCCACCACCTGTG-CCAGTTCCGCCACCTGTG-CCTGTTCCACCACCTGTG-CCTGTTCCACCACCTGTG-CCTGTTCCACCACCTGTG-CCTGTTCCACCACCTGTG-CCTGTTCCACCACCTGTGDesign primers

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