Microsatellites /Tandem Repeats database

Genome: Shewanella baltica OS223

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
346327TTGATGACTTGGC-TTGATGACTTGGC-TTGATGACTTGGC-TTGATGACTTGGCDesign primers
363518AACTCACT-AACTCACT-AACTCACTDesign primers
699458AATAAAAATT-AATAAAAATT-AATAAAAATTDesign primers
748448TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTGDesign primers
753178TCTGTT-TCTGTT-TCTGTT-TCTGTTDesign primers
844330GTTAGAGC-GTTAGAGC-GTTAGAGC-GTTAGAGC-GTTAGAGC-GTTAGAGCDesign primers
844379TTAAAGCG-TTAAAGCG-TTAAAGCGDesign primers
1008914CCTCAG-CCTCAG-CCTCAG-CCTCAGDesign primers
1142017TTGTTATCT-TTGTTATCT-TTGTTATCTDesign primers
1157811TTAAGTGACTGTAGT-TTAAGTGACTGTAGT-TTAAGTGACTGTAGTDesign primers
1255648AGACTC-AGACTC-AGACTC-AGACTCDesign primers
1295951ACAGTAACTATGA-ACAGTAACTATGA-ACAGTAACTATGADesign primers
1379312TCAGAC-TCAGAC-TCAGAC-TCAGACDesign primers
1542419TCAATAC-TCAATAC-TCAATAC-TCAATAC-TCAATAC-TCAATACDesign primers
1707506GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGC-GTTGCCTGCDesign primers
1916208ACCTAA-ACCTAA-ACCTAA-ACCTAA-ACCTAA-ACCTAA-ACCTAA-ACCTAA-ACCTAADesign primers
1917221ATGCTGTCT-ATGCTGTCT-ATGCTGTCTDesign primers
2398973TTCTGGAAA-TTCTGGAAA-TTCTGGAAADesign primers
2400523GCACTAA-GCACTAA-GCACTAA-GCACTAA-GCACTAA-GCACTAADesign primers
2439776TGGCGTT-TGGCGTT-TGGCGTT-TGGCGTT-TGGCGTTDesign primers
2473801GAGCAT-GAGCAT-GAGCAT-GAGCAT-GAGCAT-GAGCAT-GAGCAT-GAGCATDesign primers
2574745TATTTACAG-TATTTACAG-TATTTACAG-TATTTACAGDesign primers
2678241CATTAAAC-CATTAAAC-CATTAAAC-CATTAAAC-CATTAAACDesign primers
2696212TGATAGTTGA-TGATAGTTGA-TGATAGTTGADesign primers
2746654CTAAGA-CTAAGA-CTAAGA-CTAAGADesign primers
2811712ATGAAGTA-ATGAAGTA-ATGAAGTA-ATGAAGTA-ATGAAGTA-ATGAAGTADesign primers
2952336GATTAGT-GATTAGT-GATTAGT-GATTAGT-GATTAGTDesign primers
3029265GTTGAA-GTTGAA-GTTGAA-GTTGAADesign primers
3231645CTAAGTT-CTAAGTT-CTAAGTT-CTAAGTT-CTAAGTT-CTAAGTT-CTAAGTT-CTAAGTTDesign primers
3385926CTTTTGCTTTAGC-CTTTTGCTTTAGC-CTTTTGCTTTAGC-CTTTTGCTTTAGC-CTTTTGCTTTAGC-CTTTTGCTTTAGCDesign primers
3448430TCAAAAAGCGCG-TCAAAAAGCGCG-TCAAAAAGCGCGDesign primers
3516725GCAAACGGA-GCAAACGGA-GCAAACGGA-GCAAACGGA-GCAAACGGADesign primers
3541491GGATTAATGGT-GGATTAATGGT-GGATTAATGGT-GGATTAATGGT-GGATTAATGGT-GGATTAATGGT-GGATTAATGGTDesign primers
3874679CCGATTAGTTAAC-CCGATTAGTTAAC-CCGATTAGTTAACDesign primers
3878798TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGG-TGAGCTGGDesign primers
4192103AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTA-AATGCTADesign primers
4278311TGTGGAT-TGTGGAT-TGTGGAT-TGTGGATDesign primers
4500062ATAACGG-ATAACGG-ATAACGG-ATAACGG-ATAACGG-ATAACGGDesign primers
5057684CCTGTACCTGTTCCACCA-CCTGTACCTGTTCCACCA-CCTGTACCTGTTCCACCADesign primers
5057789CCACCTGTGCCTGTTCCA-CCACCTGTGCCTGTTCCA-CCACCTGTGCCTGTTCCA-CCACCTGTGCCTGTTCCA-CCACCTGTGCCTGTTCCADesign primers

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