Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Gluconacetobacter diazotrophicus PAl 5

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
19807	GGCCCA-GGCCCA-GGACCA-GGCCCA	Design primers
49118	GCC-GCC-GCC-GTC-GCC-GGC-GTC-GCC	Design primers
113546	GTCGGCGTGGGCGACGGCATCGGC	Design primers
220914	GGGCGGCAA-CGGCGGCGA-CGGCGGCGA-CGGCGGCGA-CGGCGGCGA-CGGCGGCAA	Design primers
231659	GCGCGGAATAGCGCGGGATAGCGCCGGATA	Design primers
254874	CAGCGCCAGCCCCAGCACCACCGC	Design primers
263580	CCCGGGCGGCCACCCGCCCGGCCACCCCGGCGGCCC	Design primers
292332	CCCATGGAACGCCCGCTGGAACGCCCGCTGGAACGC	Design primers
301847	CCATGTCGCCCATGCCGCCCATGCCGC	Design primers
377825	CACCGGCCGCCCAGGCCCCGGCGCCCCAGGCACCAGCCACCCAGT	Design primers
432610	GCTGCTTCTGCTTCTGCTGCTGCG	Design primers
483440	ATCGGCTGGTCGTTGATCGGATCGGCGTTGATCGGATCGTCGTTC	Design primers
486167	ACGGGCGCTGCCGTTACCGGCGGTGCCGCTGCTGGCGCTGCCGGT	Design primers
488801	CGCCATGCGCGCCTTGCGCGTCATGCG	Design primers
538039	GGCCAG-GGCCAG-GCCCAG-GACCAG	Design primers
539491	GCCGGTGCCGGCGCTGGTGCCGGC	Design primers
613096	TAAAAAAATGAAGAAAAATGAAGAAAAATG	Design primers
623822	AAAATCAAAACCAAAATCAAAAAC	Design primers
659026	CGC-CGC-CGC-CGG-CGG-CGC-CGT-CGC	Design primers
659590	CCCCGCCGCCGCACCCGCGCCCGC	Design primers
673538	GCCGCGTGCGGCCGCGACCGGCCGCATCCG	Design primers
683609	CCGCCGCCGACGCCGCCGCCGCCC	Design primers
686371	ACCCTGC-CCCCTGC-CCCCTGC-CCCCTGC	Design primers
688640	CCGCGC-CCGCGC-CCGCCC-CCGCGC	Design primers
706301	GCATGCTGGGCATCCTGGGCATGCTGC	Design primers
722361	GGCCGCGCCGGGCCGCGCCGTGCCG	Design primers
779249	TTCCTGATCCTGGTCCTGTTCCTG	Design primers
902085	CCGCCGCCGCCCGCGCCGCCGGCG	Design primers
1225049	GCCGTGACGCGCCGTGCCGACCCGCGACGC	Design primers
1235120	CCGGTTTCATGGCTGGTTTCATAGCCGGATTCAGGG	Design primers
1264220	CCCCGGCCGAAGCCGCCGCCGAAGCCACGGCCGAAC	Design primers
1325105	CCCGGCCAAG-CCCTGCCATG-CCCTGCCATG-CCCTGCCATG	Design primers
1351613	CCGGCGGCGCCGGCGGGGTCGGCGGCG	Design primers
1351717	GGCGGCGGCGGCATGGGCGGCGGCGGAGGGGGCGGCGGCGGCGGT	Design primers
1421100	CGGCGGCGCCGGCGGGGGCGGAGG	Design primers
1473651	GCCGCCCAGTCACGAACAGTCCAGTCACGAGCAGCCCGGTCACGC	Design primers
1479402	GCC-GCT-GGC-GCT-GCT-GCT-GCC-GCT	Design primers
1490008	GCCTGG-GCCTGG-GCCAGG-GGCTGG	Design primers
1530084	TGCAGCAGGCCATGGGGCAGCAGGCCACAGGGCAGCAGGGCATGG	Design primers
1541227	GGCGGAGGCATGGGCGGCGGTATGGGTGGAGGAATGGGGGGCGGCATG	Design primers
1585883	GCCGAGGACGCCCCGATGACGCCCCGATGACGC	Design primers
1587361	CCCCGGCTGCCCCGGTTGGCCCGGCTG	Design primers
1588814	GCCGGCGCGGGCGCGGGCGGCGGC	Design primers
1623048	TCCGGAACGCCGCAATCCGGCACACCGAAATCCGGCACGGCGAAA	Design primers
1674576	GCCGCCCCAGCCGCCTCCACCCCAGCCACCGCCGCCCCAGCCGCC	Design primers
1674622	CCCCAGCCG-CCCCAGCCG-CCCCAGCCA	Design primers
1676123	CCCGC-CCCGC-CCGGC-GCCGC-ACCGC-CCGGC	Design primers
1753157	CGAGGACTGGGGCGAAGACTGGGACGAAGACCGGGG	Design primers
1804911	CAAGAAGACCGTTGCCAAGAAGGTCGGTGCCAAGAAGACGGTTGC	Design primers
1997474	CGCC-GGGA-CGGA-CGCG-GGAA-CGGA-CGGA-GGGA-CGGA	Design primers
2051516	CACCACCCCCACCACCAGCAGCAC	Design primers
2068069	CGC-CGG-CGG-CGG-CGG-CGG-CGG-CGG	Design primers
2178769	CCGGCGCGGCCCCGCCCAGCGCGGC	Design primers
2198305	CGCCGGCAGGGGCCGGAAGGCGCCGGGCGG	Design primers
2205439	TGCATGACGTGGCCTTGCGTGATGCGGCCTTGCATAACGGGACCT	Design primers
2233025	TGGCCCTGGCGCTGGCCGAGGCCC	Design primers
2233932	CCCTTCCCGTTCCCCTTCCCGTTC	Design primers
2241776	GTGCGGTTCGGTGGGGTTCGGGGCG	Design primers
2247044	AGGGCCAGGCCGCCGGGGGCCAAGCCGCCGGGGGCCACGCTGCCG	Design primers
2251491	GCGGCT-GGGGCT-GGGGCT-GGGGCT	Design primers
2253680	AGGGCCAGCCCGTCCAGGGCCTGCCCGGCGAAGGCCAGGCCGCCC	Design primers
2255475	GGGCTGGCGCGGCGGATGGGGGCCTGGCTGGCATGGCGGATGGGGACCCGGCTGGCGTGGCGGCTGGGGGCC	Design primers
2255668	TATCCCGCCTATCCTGTCTATCCCGCGTACCCTGCCTATCCCGCCTATCCGGCA	Design primers
2266702	GCGCCGGCCCCGGCGGCGGCGCTG	Design primers
2272814	TGACGCTTGCCTCGGCGCTTGCCTCGACGATTGCCT	Design primers
2295682	CGCGGCCGAGGAAGCGCGCCGGCGGGACGAGGAAGCGCGCCGCGCGGCCGAGGACGAGGTCCG	Design primers
2318072	AGC-CGC-CGC-CGC-CGC-CCC-CGC-CGC-CGC-CGC-CGC-CGC	Design primers
2326938	CGCTGGCCCTGGCGCAGGGGCTGGCGCTGG	Design primers
2356200	CCGTCG-CCGTCG-CGGTCG-CCGTAG-CGGTCG	Design primers
2369244	GGGCAAGGGGGCAGGGGGGCAAGG	Design primers
2384067	CGCCGCAGCCGCCGTCGCGGCCGC	Design primers
2450766	ACCACGACCAGGACCAGGACCACC	Design primers
2455489	GCTTCGGCTTCCGCTGCGGCTTCC	Design primers
2486415	CGGCCCCGCCCGGCGCGACCCCGCC	Design primers
2589627	TGGCCGTGGCGGTGGCCGTGGCGG	Design primers
2590846	TGCTGGCGCTGGTGCCGGTGCTGG	Design primers
2742364	TCTCTCGGCACGGCCACGGCGGGC-ATTCGCGGCGCGGCCACGGCGGGC-AATCGCGGCACGGCCACGGCGGGC-GATAGCGGCACGGCCACGGCGGGC-GATAGCGGCACGGCCACGGCGGGC-AATCGCGGCACGGCCACGGCGGGC-ATTCGCGGCACGGCCACGGCGGGC-AATCGCGGCGCGGCCACGGCGGGC-GATGGCGGCACGGCCACGGCGGGC-AATCGCGGCACGGCCACGGCGGGC-GATAGCGGCACGGCCACGGCGGGC-TATGGCGGCGCGGCCACGGCGGGC-GATATCGGCACGGCCACGGCGGGC-GATAGCGGCACGGCCACGGCGGGC-AATCGCGGCACGGCCACGGCGGGC	Design primers
2742725	ATGGCGGCGCGGCCACGGCGGGCATTCGCGGCACGGCCACGGCGGGCGATAGCGGCACGGCCACGGCGGGCAATCGCGGCGCGGCCACGGCGGGCGATAGCGGCACGGCCACGGCGGGCTATGGCGGCACGGCCACGGCGGGCGATAGCGGCACGGCCACGGCGGGCAATCGCGGCACGGCCACGGCGGGCGATAGCGGCACGGCCACGGCGGGCATTCGCGGCACGGCCACGGCGGGCGATAGCGGCACGGCCACGGCGGGCAATCGCGGCGCGGCCACGGCGGGCGATAGCGGCACGGCCACGGCGGGCTATGGCGGCACGGCCACGGCGGGCGATAGCGGCACGGCCACGGCGGGCAATCGCGGCACGGCCACGGCGGGCGATAGCGGCACGGCCACGGCGGGCTATGGCGGCACGGCCACGGCGGGCGATGGCGGCACGGCCACGGCGGGCG	Design primers
2756219	CAGTTCGGCCAGCTCGGCCAGTTCGGC	Design primers
2758219	CAGGGCCAGGGTCATGGCCCGGGC	Design primers
2764958	GCCCTGGCCCAGACCCTGCCCCTG	Design primers
2768405	GGCCCCGGC-TGCCCCGGC-TGCCCCGGC	Design primers
2776431	CGCGGCCAGGCATGATTCGGCCAGGCATGATCCGGACAGGCATGA	Design primers
2787855	CCGAGCCGCCGTCTGGGCCGCCGTCTGGGCCGCCGT	Design primers
2799479	AGGAGGAGGATGAGGGGGAGAAGG	Design primers
2806352	CCGCGCTGCGCCACGCTGCGCCGGG	Design primers
2821477	CGGTGCGATAGGACGGTGCGACAGGACGGGGCGACAGGA	Design primers
2824863	GGCCGGAGCGGCCGGCGCGGCCGGAGC	Design primers
2828251	CGCTGGGGCTGGCGCTGCTGCTGG	Design primers
2854244	GTGGCGGTGTCGGTGACGGTGGGG	Design primers
2856395	GTCTGG-TTCTGG-TTCTGG-TTCTGG-CTCTGG	Design primers
2858229	GTACCTTGGGCCGTACCTTGGGCTGTAGCCTGGGCCGTATTTTGGGCC	Design primers
2871709	CGGTGCGGTCCGGGGCGGCGCGGGG	Design primers
2894098	TGGCGGCGGCTGGGGCGGCGGCGGCTGGGGTGGACCCGGCTGGGG	Design primers
2937739	GCAGCAGCCGCAGCAGCCGCAGCG	Design primers
2938362	GGCGCCGGGGCGGGCGCCGAGACGGGTGCAGGGGCG	Design primers
2984151	CGGGCCTGGCCGGGCCGGGTCGGGG	Design primers
2985455	CGTGGCCGGGGCGGTGGCCGAGGC	Design primers
3020456	CTGGC-GGGGC-GGGGC-GGGGC-GGGGC-GGGGC	Design primers
3127331	CGACCGGCCAGACCGGCCCGACCGGCG	Design primers
3135261	CAGGGCGGCCGGCAGCAGGACGGTCCGCAGCAGGGCGGCCCGTGG	Design primers
3144077	TCAGGGTGCCGGCGAGGGTGCCGGTCCCGGTGCCGG	Design primers
3144696	GGTCAGGGTGCCGGCGAGGGTGCCGGTCCCGGTGCC	Design primers
3145008	GGTCAGGGTGCCGGCGAGGGTGCCGGTCCCGGTGCC	Design primers
3145322	GGGTGCCGGCGAGGGTGCCGGTGCCGGTGCCGGCCA	Design primers
3145629	GGTCAGGGTGCCGGCGAGGGTGCCGGTCCCGGTGCC	Design primers
3145938	GGTCAGGGTGCCGGCGAGGGTGCCGGTCCCGGTGCC	Design primers
3184292	ATGCTGGCGGGTTCG-ATGCTGGCGGGTTCG-ATGCTGGCGGGCATG	Design primers
3184368	CGGCACCGGCGGTGCAGGGGCCGGCGGTGCAGGGGCCGGCGGTGC	Design primers
3200813	GG-CG-CG-CG-CG-GG-AT-CG-CG-CG-AG-CG-GG-CG-CG	Design primers
3208953	GGAGCGGCAGCGGGAACGGGAGTG	Design primers
3224614	GGGCGGGCGCGGCCGGGCGGGGGCGGATGC	Design primers
3283677	AACACCAGCACCACCAGCACCACCAGC	Design primers
3337629	ATGCCGGCCATGCCGGCGATCCCGGCC	Design primers
3345940	GGCGGCCGGACTGGTGCCCGGACTGGCGCCCAGACT	Design primers
3356421	GGTCCGGGGAAGGGCCCAGGGAAGGGCCCAGGGAAG	Design primers
3414362	CGTCATCGGATGTCA-CGTCATCGGATGTCA-CGTCATCGGGCGCCA	Design primers
3419859	CGCAGGCGCCGGCGCAGCAGCAGG	Design primers
3439461	AGGCGCCC-CGGCGCCC-CGGCGCCC	Design primers
3443055	CTGTCGCGGTCGCTGCCGGTGTCG	Design primers
3484129	TTTTATGGGATATCATGGGATTTTATGGGA	Design primers
3509281	GGCTGGTGCTGGGGCTGGCGCTGGGCCTGG	Design primers
3517374	GCC-GCC-GCC-TCC-TCC-GCC-CCC-GCC	Design primers
3517448	CGCCCCCGCC-CGCCCCCGCC-CCGCCCCGCC	Design primers
3586572	GCCGCCGCCGCCGCTGCCGCGGCC	Design primers
3600435	GACGGCGCGGCTGACGGCATGGCTGACGGGGCGGCT	Design primers
3684118	TGCCGCTGCCGTTGCGGCTGCCGA	Design primers
3703553	AGTGCCCAGGGAAGTGATCAGGGAAGTGACCAGGGA	Design primers
3799462	TTCCGGCGGATTTCGTCCCGGTCCCGATGGATTTCGTCCCGGTTCCCGTGGATTTCGAGCCGG	Design primers
3882898	CCAGCACCGGCACCAGCACCAGCC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

19807

GGCCCA-GGCCCA-GGACCA-GGCCCA