Microsatellites /Tandem Repeats database

Genome: Burkholderia cenocepacia J2315

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
65775CGGCCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCADesign primers
77830ACATCGGC-ACATCGGC-ACATCGGCDesign primers
95860GGCACCC-GGCACCC-GGCACCC-GGCACCC-GGCACCCDesign primers
115864GGCTCGGAC-GGCTCGGAC-GGCTCGGAC-GGCTCGGACDesign primers
197917TGGCC-CGGCC-CGGCC-CGGCC-CGGCC-CGGCCDesign primers
360493CCATCG-CCATCC-CCATCC-CCATCC-CCATCC-CCATCCDesign primers
559334TGGCCGAC-TGGCCGAC-TGGCCGAC-TGGCCGACDesign primers
579966GGGGACGGCCATCCGGGGACGGGCATCCGGGGACGGCCATCCDesign primers
675652AGGCAGG-AGGCAGG-AGGCAGG-AGGCAGGDesign primers
1133861GGGAAAGC-GGGAAAGC-GGGAAAGC-GGGAAAGCDesign primers
1170524GCCGCTACTCGCCGCTACTTGCCGTTACTCGCCGTTACTCDesign primers
1180016GGACGCCCGGTTAG-GGACGCCCGGTTAG-GGACGCCCGGTCAGDesign primers
1242692GACGACATC-GACGACATC-GACGACATC-GACGACATC-GACGACATCDesign primers
1462866ATCGCCGGCCGCCGGAGCGCCGGCCGCCGGATCGCCGGCCGCCGGDesign primers
1592067ACCGGGCGCCCCTA-GCCGGGCGCCCCTA-GCCGGGCGCCCCTA-GCCGGGCGCCCCTADesign primers
2024266CGCCCCGT-CGCCCCGT-CGCCCCGTDesign primers
2179240ATCGGGCGACCGGC-AGCGGGCGACCGGC-AGCGGGCGACCGGC-AGCGGGCGACCGGC-AGCGGGCGACCGGCDesign primers
2754564TGGGGCTTGGTG-CGGGGCTTGGTG-CGGGGCTTGGTGDesign primers
2881813CGTCGA-AGTCGA-AGTCGA-AGTCGA-AGTCGA-AGTCGADesign primers
3013993GGC-GGC-GGT-GGC-GGT-GGC-GGT-GGC-GGT-GGC-GGT-GGC-GGT-GGC-GGT-GGCDesign primers
3014042GTGGCAACGGCGGCGGCGGCAACGGCGGCGGCGGCAACGGCGGCGDesign primers
3014088CAACGGCGGCGG-CAACGGCGGCGG-CAACGGCGGCGG-CAACGGCGGCGG-CAACGGCGGCGG-CAACGGCGGCGGDesign primers
3049865CGCGCCGC-CGCGCCGC-CGCGCCGCDesign primers
3397015CACGAT-CACGAT-CACGAT-CACGAT-CACGATDesign primers
3480039TCGGCGTTGGCGTTGGCGTTGGCGTCGGCGTTGGCGTTGGCGTTGGCGTTGGCGTTGGCGTCGGCGTCGGCGDesign primers
3680267TCAGGGACGCCCGGTTAGGGACGCCCGGTCAGGGACGCCCGADesign primers
3865601CTCAAGCCG-CTCAAGCCG-CTCAAGCCG-CTCAAGCCGDesign primers

Please help us improve this resource by reporting problems, suggestions etc.