Microsatellites /Tandem Repeats database

Genome: Burkholderia cenocepacia J2315

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
65778CCACGA-CCACGA-CCACGA-CCACGA-CCACGA-CCACGA-CCACGA-CCACGADesign primers
77830ACATCGGC-ACATCGGC-ACATCGGCDesign primers
95860GGCACCC-GGCACCC-GGCACCC-GGCACCC-GGCACCCDesign primers
115864GGCTCGGAC-GGCTCGGAC-GGCTCGGAC-GGCTCGGACDesign primers
197918GGCCC-GGCCC-GGCCC-GGCCC-GGCCC-GGCCCDesign primers
360499CCATCC-CCATCC-CCATCC-CCATCC-CCATCC-CCATCCDesign primers
559334TGGCCGAC-TGGCCGAC-TGGCCGAC-TGGCCGACDesign primers
675652AGGCAGG-AGGCAGG-AGGCAGG-AGGCAGGDesign primers
1133861GGGAAAGC-GGGAAAGC-GGGAAAGC-GGGAAAGCDesign primers
1242692GACGACATC-GACGACATC-GACGACATC-GACGACATC-GACGACATCDesign primers
1592068CCGGGCGCCCCTAG-CCGGGCGCCCCTAG-CCGGGCGCCCCTAG-CCGGGCGCCCCTAGDesign primers
2024266CGCCCCGT-CGCCCCGT-CGCCCCGTDesign primers
2179242CGGGCGACCGGCAG-CGGGCGACCGGCAG-CGGGCGACCGGCAG-CGGGCGACCGGCAGDesign primers
2754565GGGGCTTGGTGC-GGGGCTTGGTGC-GGGGCTTGGTGCDesign primers
2881814GTCGAA-GTCGAA-GTCGAA-GTCGAA-GTCGAADesign primers
3013996GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGTDesign primers
3014067CGGCGGCGGCAA-CGGCGGCGGCAA-CGGCGGCGGCAA-CGGCGGCGGCAA-CGGCGGCGGCAA-CGGCGGCGGCAA-CGGCGGCGGCAADesign primers
3049865CGCGCCGC-CGCGCCGC-CGCGCCGCDesign primers
3397015CACGAT-CACGAT-CACGAT-CACGAT-CACGATDesign primers
3480065GGCGTT-GGCGTT-GGCGTT-GGCGTT-GGCGTTDesign primers
3865601CTCAAGCCG-CTCAAGCCG-CTCAAGCCG-CTCAAGCCGDesign primers

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