Microsatellites /Tandem Repeats database

Genome: Ralstonia pickettii 12J

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
37138CGTGTTGCCCGTGTTGACCGTGGTGCCDesign primers
99559GCCAGCACCAGCGGCAGCTCCAGCDesign primers
107383AGTTTTT-AGTTTTT-GGTTTTT-GGTTTTT-GGTTTTT-GGTTTTTDesign primers
136700CCTTGCT-TGTTGCT-TGTTGCT-TGTTGCT-TGTTGCT-TGTTGCTDesign primers
180795GGCAAT-GGCAAT-CGCAAT-GGCGATDesign primers
215630GCACCGGCCGCCGCACCGGCGCCCGCGCCGGCCGCADesign primers
257069GCGCGGCTTCGGGCGCCGCTGCGGGCGTGGGTTCGGDesign primers
315920GCAAGGATGCGATGT-CGAAGGACGCGATGT-CGAAGGACGCGATGT-CGAAGGACGCGATGT-CGAAGGACGCGATGT-CGAAGGACGCGATGT-CGAAGGACGCGATGT-CGAAGGACGCGATGT-CGAAGGATGCGATGT-CGAAAGATGCGATGTDesign primers
316071GAAAGATGCGATGAA-GAAAGACTCGATGAA-GAAGGACGCGATGAA-GAAGGACGCGATGAA-GAAGGACGCGATGAADesign primers
431749TGATCGTGGTCGTGATCATGGTCGDesign primers
448371GCCGTTGCCGCTGTCGTTGCCGTTDesign primers
451343ATGGTC-AAGGCC-AGGGCC-AAGGCC-AAGGCC-AAGGCCDesign primers
495531AGATCACCA-GGATCACCA-GGATCACCADesign primers
503863CGCCGCCAT-CGCGGCCAT-CGCGGCCAT-CGCGGCCAT-CGCGGCCATDesign primers
515274GCTGGCGCAGGCGGTGGCGGTGGCDesign primers
613975GGGCGGCATGGGTGGCATGGGCGGCATGGACGGCATDesign primers
688400AGCCGCGTGGCCGCGTAGCCGCGCDesign primers
814329CAACCGGAGCAGCCGGAGCAGCCGGAGDesign primers
831551TCAACTGATCACCTGATCAACGGADesign primers
857507ACGGAA-GCGGAA-GCGGAA-GCGGAADesign primers
867281GCTGTTGCTATTGCTGTTGCCGTTDesign primers
940534GGGCGTGGGCCTGCGCGTGGGCGTDesign primers
979888GCTTCGGCTTCCGCTGCGGCTTCCDesign primers
1014335GGCCGA-GGCCGA-AGCCGA-GGTCGADesign primers
1030579CGATGCAGATGCCGGTGCCGATGADesign primers
1063647GCGGTGGCTGCCGTGGCTGCGGTGGCGDesign primers
1115168CACCCGCATCCGCCCCCGCACCTGDesign primers
1140101CAAGGGCCAGGGCAAGGCCAAGGTDesign primers
1200875GTTCA-GTTCA-ATTCA-GTACA-GGTCADesign primers
1226589CCTGCCAGCGCCTGCCAGGACGTGCCTGCGDesign primers
1369477GGCGCGGGGGGCGCGCGGGGCGCGGCGDesign primers
1534101CGGCGGCAGCGGCGGCAGCGGCGCDesign primers
1648733ATGCCG-GTGCCG-GTGCCG-GTGCCGDesign primers
1737886CTCGCATGACGCGCATGACGCGCATGADesign primers
1789901GGGCCGCGGCGGTTTCGGCGGTGGCAGCGGCGGTTTCGGTGGAGGCGGCGGTGGTTTCGGTGGDesign primers
1855375CTTCGCCATCGCCTGCGCCGTCGCDesign primers
1887158CAGCGCCAGGGCCACCGCCAGCGCDesign primers
1928829TTTGCATCGAGCCATGGTCCATGC-CCTGCATCGAGCCGTGGTCCATGC-CCTGCATCGAGCCCTGATCCATGC-CCTGCATCGAGCCGTGGTCCATGC-CCTGCATCGAGCCGTGGTCCATGC-CCTGCATCGAGCCGTGGTCCATGC-CCTGCATCGAGCCCTGATCCATGC-CCTGCATCGAGCCCTGATCCATGC-CCTGCATCGAGCCCTGATCCATGC-CCTGCATCGAGCCGTGGTCCATGC-CCTGCATCGAGCCCTGATCCATGC-CCTGCATCGAGCCGTGGTCCATGC-CCTGCATCGAGCCCTGATCCATGC-CCTGCATCGAGCCCTGATCCATGC-CCTGCATCGAGCCCTGATCCATGC-CCTGCATCGAGCCGTGGTCCATGCDesign primers
1929989GTCCATGCC-AGACATGCC-AGACATGCC-AGACATGCC-AGACATGCC-AGACATGCCDesign primers
1941061GACATGGGCATGGACATGAACATGDesign primers
1951379CACCGC-CACCGC-CGCCGC-CACCGCDesign primers
2005214CGCCGGCGCGGGAGCCGGTGCCGGDesign primers
2018143TCTGCATCTGCTCCTGCATCTGCADesign primers
2052452CGACAG-CGACAG-CGGCAG-CGTCAGDesign primers
2108323CTGCACATCTGCATATCTGCCCATDesign primers
2113079GCTTTTTGCTCCGCGCCTCGAGCTTTTTACTCGGCGAGTCGAGCTTTTTACTCGGCGAGTCGAGCTTTTTACTCCGCGTGCCGAGCTTTTTGCTCCGCGTGCCGADesign primers
2117583TCAGGCCCAGGCTCAGGGCCAGGCDesign primers
2207945CAGAACGCCGAGAACGCCCAGCACGCCDesign primers
2208931CGCAACCGCAAGCGCAGCCGCAACDesign primers
2232239GGAGCCGCCCAAGCAGCAGCCGGTCAAGCAAGAGGCGCCCAAGCCDesign primers
2268746GCCCGG-CACCGG-CACCGG-CACCGG-CACCGG-CACCGGDesign primers
2295906GGTGCCGGTGGCGGGGCCAGTGCCDesign primers
2342369GCGCCCGAACCTGCCGCTGCCGCACCTGCCGCTGCCGCACCTGCCDesign primers
2383285CGGCCCCCACGGGCCCCAAGGCCCCCADesign primers
2385260CACGCACACGTACACGCTCACGCTDesign primers
2435983ACGACT-CCGACT-TCGTCT-ACGTCT-ACGTCT-ACGTCT-ACGTCT-ACGTCT-ACGTCT-ACGTCT-ACGTCT-ACGTCTDesign primers
2468020GCGCGGCTCGGCGCGACGCGGCGTGGCGAGDesign primers
2517397GCAAGTGCGAGTGCAACTGCAAGADesign primers
2523950GCTTCAGCTTCTTCTTCAGCTTCCDesign primers
2593828GGTGCCGGAGCCGCTGCCGGTGCGGATGCCDesign primers
2661837GCCATCGCCACCGCCCTCGCCATCDesign primers
2664721CAAGATCGAGATCAAGACCAACATDesign primers
2684091AGCGCGCAGCAGCACGCGGCGGCGCGCATCDesign primers
2700586CACCGGCACTGGCTCCGGCGCCGGDesign primers
2855548CGCGTGACATTGTGTGACATCGCGTGACTGDesign primers
2883033GCGGCGGCGGCTTCGGCGGGGGCGDesign primers
2975751CTCCTTCACCTTCTCCTGCACCTTDesign primers
3079917CCGAACCCG-GCGAACCCG-GCGAACCCGDesign primers
3161316CAGCGT-CCGCGT-CCGCGT-CCGCGTDesign primers
3164734AGCCTTCTTGGCTGCAACCTTCTTCACTGCAGCTTTCTTGGCCGGGGCCTTCTTGGCTGCAACCTTCTTCACTGCAGCTTTCTTGGCCGGGGCCTTCTTGGCTGCAACCTTCTTCACTGCAGCTTTCTTGGCCGGGGCCTTCTTGGCTGCAACCTTCTTCACTGCAGCTTTCTTGGCCGGAGCCTTCTTGGCAGCDesign primers
3338347ATTTGCGACGGATCTGCGATGGATTTGCGGCAGDesign primers
3562949CCAAACCAAAACCAAAACCAAAACCAAAACDesign primers
3562998TCACGACA-TCACGACA-TCACCACADesign primers
3581465CAGCCACATCGGCCACATCGGCCACATDesign primers
3624619CACCAACGACAGCGCCAAGGACAGCGCCAACGAGAGDesign primers
3637479CAAACCA-CAAACCA-CGAACCA-CGAACCADesign primers
3867682GCGCCAGCACCAGCAGCGGCAGCACATGCAGCGCCTGCGACAGCADesign primers
3874278ACCTGAATACCGGAATACCTGAGTDesign primers
3898963CTGCTGCCA-CTGCTGCCA-CTGCGGCCADesign primers
3917341GGTGCGGCGCGCGGCGGCGCAGTACGGCGCDesign primers

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