Microsatellites /Tandem Repeats database

Genome: Burkholderia phymatum STM815

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
82122CGTGAT-CGTGGT-CGTGAT-CGTGAT-CGTGGT-GGTGATDesign primers
105341TTCGCTTTTTCGGTTTTTCGCTGTDesign primers
120191GCTCGATTCAGCTGGATGCAGCTCGATGCADesign primers
145959TGCCGATAC-CGCCGATAC-CGCCGATAC-CGCCGATACDesign primers
230605AGCCGATTGAGTCGATTGAGTCGATTGDesign primers
318834GGCGCAGCAGCGGCCGCAGCATCGGACGCCGCAGCGDesign primers
426328CGTCGCCGTCACCTTCGCAGTCGCDesign primers
454413CAG-CCG-CTG-CCG-CCG-CCG-CCG-CCGDesign primers
533776CCGCGCGCGCCGCTCGCGCCGCGCGCCDesign primers
578156CACCACGCAGATACCACGCGGATACTACGCAGADesign primers
727977GATCGCGCGATCGCGTGGTCGCGCDesign primers
816531GGGCACGGGCATGGTCACGGGCATDesign primers
885678GATGCGGCTGCGGTTGCGGTTGCGGATGCTDesign primers
885826CTGCGG-CTGCGG-CTGAGG-CTGCGGDesign primers
885869TGCGGCTGAGGCTGAGGCTGCGGADesign primers
890689GCGCTGGCGGCGCTCGCGACGCTGGCGDesign primers
916744CAGGTTCGACGA-CCGGCTCGACGA-CCGGCTCGACGA-CCGGCTCGACGADesign primers
917360ACGGCGACCGCGACGGCGACGGCGDesign primers
938213TCGGCT-TCGGCT-TCCGCT-GCGGCTDesign primers
949954CGCCGCGAATCAGGCCGCGAGTCAGGCCGCGAAGCADesign primers
1013234CTGCCGCAG-TTGCCGCAG-TTGCCGCAGDesign primers
1030748CGAGCGCGATCGCGGGCGCGATCGGGAGCGDesign primers
1044717GTGGTTTGCGTCGTCGTTTGCATCGGGTTTTGCGTCDesign primers
1066068CAATCCCGACGCCAAACCCGGCGCCAAACCCGGCGCDesign primers
1087018GTGCAGATGCAGGAGCAGATGCAGDesign primers
1091314AAAAGGAAACAACGAGGAAACAACGAGGAAACADesign primers
1107125TCCGCTCCGACCA-GACGCTCCGACCA-GACGCTCCGACCADesign primers
1182601GCTCGTTAAACCCACGTTAAACCCTCGTTAAACDesign primers
1206129CGTCGCCGTCGATGTCGCCGTCGADesign primers
1265326ATCGATAAGCGGATCGACAAGCGCATCGATACACGGDesign primers
1312119ACGTATGTAACGCATGTAACGTATGTGDesign primers
1314861TGGCGCCGCGTT-TGGCGCCGCGTT-TGCCGGCGCGTTDesign primers
1374438CAGCGCGACCAGCGCGGCCAGCGCGCCDesign primers
1382510GCGGCCGCC-GCAGCGGGC-GCAGCGGGC-GCAGCGGGC-GCAGCGGGC-GCAGCGGGCDesign primers
1488712CGTTGCCGATGCCGTTGCCGTAGCDesign primers
1519230GCATTCGCTCGCAT-TCATTCGCCCGCAT-TCATTCGCCCGCAT-TCATTCGCCCGCATDesign primers
1558538CGGATTTGCCGGGTTTGCCGGGTTTGCDesign primers
1561419TTCGCTTGTTGCTTCCCTTCTTGCTTCGCTTGTTGCDesign primers
1577999GCT-TCG-GCA-CCG-GCT-GCT-GCT-GCT-TCG-GAT-TCG-GCT-GCT-GCT-GCT-TCG-GGC-GCT-GCT-GCT-GCTDesign primers
1581171CTGCTGTTGCTGCTTCTGTTGCTGDesign primers
1581196TCGAGCTGCTGTTGCTGT-TCGAGCTGCTGTTGCTGT-TCGAGCTGCTGTTGCTGT-TCGAGCTGCTGTTGCTGCDesign primers
1644690GTCGCGCCGCGCCGCGTCGCCTCGCDesign primers
1652081CGACAG-CGACAG-CGGCAG-CGTCAGDesign primers
1668025CTTTTGCTTTTTGCTTTTTGCCTTTTGGCTTATGCDesign primers
1704642GCGTGCGCGGGCGCGTGAGCGTCCDesign primers
1715495CACGGCTACTGGGGCGGTGGCCACGGCACCTGGGCTGGTGGCCACGGCACCTGGGGCGGCGGTDesign primers
1718743CGATTCGCCGC-ATATTCGCCGC-ATATTCGCCGCDesign primers
1821986TTTTTG-CTTTTG-CTTTTG-TATTTGDesign primers
1848654GTGTGCGGCTCA-ATGTGCCGCTCA-TTGTGCCGCTCA-TTGTGCCGCTCADesign primers
1883392GCCGTC-ACAGTC-ACAGTC-ACAGTC-ACAGTC-ACAGTCDesign primers
1901673GCCCTCGCCG-CGCCTCGCCG-CGCCTCGCCGDesign primers
1902040GTCGCACCGTCT-CGCGCACCGTCT-CGCGCACCGTCTDesign primers
1904475TGAGGCGCGACCTGCGGCACGACCTGGGACGCGACCDesign primers
1925383CGCCTCGTGCCGTCTTGTGCCGTCTCGTGCCGTCTCGTGCDesign primers
1937423CGCTGTCGGGCGCGCTTTCGGGCATGCTGGCGGGCGDesign primers
1948464GTCGCGTGG-ATCGCGTGG-ATCGCGTGGDesign primers
1949117GCGGCGCCCTGCATCGTCGCCCTGCATCGTCGCCCTGCADesign primers
2027147AATCAGGGCGATCAGGGCAAACAGGGCDesign primers
2080807CAC-CGC-CGC-CGC-CTC-CGC-CGC-CGCDesign primers
2091429CTGAGTGTCA-CTGAGTGTCA-GTGAGCGTCA-CTGAGCGTCGDesign primers
2286323CGAGCACGATCACGAGCGCGAGCGDesign primers
2310766CCGCGACAGCGACGGCGAACGCGADesign primers
2315965GCG-GCG-TCG-GCG-GCG-TCG-ACG-GCGDesign primers
2344426CGGCCGCGGCTGCGGCCCCCGCCGDesign primers
2349803GTAACTCGCGTAACTAGCGTAACTCGCDesign primers
2413034GCGAACGCGAAGGCGACCGGGAACDesign primers
2470573AACGGGATCGC-CGCGGGATCGC-CGCGGGATCGC-CGCGGGATCGCDesign primers
2488269CGGCGAGGCGCTGCGCGCCGCGGCCCGCCGDesign primers
2496470GCCGCTTCCTGTGCCGCTTCATCTGCCGCTTCATCTGCCGCTTCATGGDesign primers
2503043ACGCGACGCTGCGCGACACGCCGCGDesign primers
2511940CTCGCGCTCGCCCTCGGGCGCGCGDesign primers
2512865CTGAACGGCCAGTGAACGGCCAATGAGCGGCCADesign primers
2532758GCAAATTCACGGGCAAGTTCGCGGGCAAATTCGCGGDesign primers
2535095GCTCAT-GACCAT-GACCAT-GACCAT-GACCAT-GACCATDesign primers
2611227GCTCGATCTCGAGCTTGAGATCGADesign primers
2625567CGCCCCGCGCCGACCAGCCCCGCCACGCCGDesign primers
2707439TCCGCTTCGATC-CCTGCTTCGATC-CCTGCTTCGATC-CCTGCTTCGATCDesign primers
2731509GCTCGCGCGCGCTGTCGCGCGCACGCGCGADesign primers
2753274GCCGAGGCCCAGGCCAAGGCCGACGCCGCGDesign primers
2770247ATGGCAATAACGACGGCAATAACGATGGCAATGGCGDesign primers
2972046CGGCGCCGGAGCAGGCGCCGGCGCDesign primers
2975354GCAGGCGCCTTCTTCGCAGCGGCCTTCTTCGCTGCGGCCTTCTTCDesign primers
2975468GCGGCCTTCTTCGCAGCAACCTTCTTCGCAGCAACCTTCTTCACAGCGACTTTCTTCGCTDesign primers
2975591GCAACCTTCTTCACTGCGACCTTTTTCGCTGCGACCTTCTTCACADesign primers
3002354AATCAGGAGCGAATCGGAAGCGGATCAGGAACGDesign primers
3031340GGGGCGCGGTGGCGCGGTGGCGCGDesign primers
3094846CCGCCGCCGCAGGCGCCGCTGCCGDesign primers
3163733CAGGCGCAGACGCAGGCGCAGGCGDesign primers
3209082CCGCGCCCGCGTCCACGCCAGCGCDesign primers
3310856CTTTTT-GGTTTT-GGTTTT-GGTTTT-GCTTTT-GGTTTTDesign primers
3311545AGCAAA-ACCGAA-AGCAAA-AGCAGA-AGCAAA-AGCAAA-AGCAGA-AGCAAA-AGCAAADesign primers
3360349GGCGCGGGTGCGTGCGCGGTCGCGDesign primers
3368586CACGAGACAGACACCGGACAGACACCAGACAGADesign primers
3449723GGCGGCGGCGGGGCCGGCGGCGGCDesign primers
3450953CAGCCGCAGACGCAACCGCAGCCGDesign primers
3460638CGTGACGGGCGTGGCGGGTGTGACGGGDesign primers

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