This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
| Position | Sequence | |
| 89141 | ATACTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG | Design primers |
| 131936 | CTGATGGCG-GTGATGGCG-GTGATGGCG | Design primers |
| 190271 | AG-AA-AA-AG-AG-AA-AG-AA-AC-AC-AA-AA | Design primers |
| 202932 | CTTTTTC-CTTTTTC-ATTTTTC-ATTTTTC | Design primers |
| 261579 | CCTTTGTTTTTCTTCTCTTTTTTCTTCTTCTCTTTTTTCTTCTTC | Design primers |
| 261748 | TTCCTATTT-TTCCTATTT-TTCCTAATT | Design primers |
| 263166 | GAACAAAATAGGAAAAAATAGGAAAAAATA | Design primers |
| 263248 | TTCCTATTT-TTCCTATTT-TTCCTAATT | Design primers |
| 264128 | TTCCTATTT-TTCCTATTT-TTCCTAATT | Design primers |
| 320141 | TATGAAAACT-GCAAAAAACT-GCAAAAAACT-GCAAAAAACT-GCAAAAAACT-GCAAAAAACT-GCAAAAAACT-GCAAAAAACT-GCAAAAAACT-GCAAAAAACT | Design primers |
| 368827 | CTAGGCT-GTAGGCT-GTAGGCT-GTAGGCT-GTAGGCT | Design primers |
| 380112 | GTGGTTGCGGTTGAGGTTGTGCTT | Design primers |
| 383105 | CCTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC | Design primers |
| 410077 | CCAAAAATATCGCCGAACATATCGCCGAAAATATCA | Design primers |
| 432686 | AGCCTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG | Design primers |
| 450249 | AAATGAC-AGTCTAC-AGTCTAC-AGTCTAC-AGTCTAC-AGTCTAC-AGTCTAC-AGTCTAC-AGTCTAC | Design primers |
| 509931 | ATTTT-ATTTT-TTTTT-TTTTT-TTTTT-TTTTT | Design primers |
| 566220 | ATATACAAGATA-GGATACAAGATA-GGATACAAGATA | Design primers |
| 594208 | AAAGGAAAGAATAGGAAAAGAAATG | Design primers |
| 619615 | TGTT-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC | Design primers |
| 694781 | ACATT-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC-GTTGC | Design primers |
| 703277 | TTTTATC-CTTTATC-CTTTATC-CTTTATC | Design primers |
| 703580 | GCGGTGC-ATGGTGC-ATGGTGC-ATGGTGC-ATGGTGC-ATGGTGC | Design primers |
| 815701 | ATACTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG | Design primers |
| 932489 | GTGGTCGTGATCGTGGTCATGGTC | Design primers |
| 932514 | TGTTTGTGGTCATGGTCATGCTTGTGTTCATGGTCATGTTTGTGGTCGTGGTCATGGTCGTGGTCGTGGTCA | Design primers |
| 932587 | GGTCATGGTCGTGGTCGTGGTCATGGTCATGGTCATGGTCGTGGTCGTGGTCGTGGTCATGGTCATGGTCATGGTCGTGGTCATGGTCGTGGTCATGGTCATGGTCATGGTCATGGTCATGGTCATGGTCATGGTCGTGATCAT | Design primers |
| 969581 | AAATGAC-AGTCTAC-AGTCTAC-AGTCTAC-AGTCTAC-AGTCTAC-AGTCTAC-AGTCTAC-AGTCTAC | Design primers |
| 996908 | ATTT-TTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA-CTGA | Design primers |
| 1113489 | ATAA-TCTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG | Design primers |
| 1115161 | ATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC | Design primers |
| 1116051 | TT-AC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC | Design primers |
| 1116882 | ATGC-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT | Design primers |
| 1180815 | ATACTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG-GCTGTAG | Design primers |
| 1264177 | CTTCGGTTTTTCCTTCGGCTTATCTTTCGGTTTCTC | Design primers |
| 1311952 | GACATCTTAGGAAATCTTAGGAAATCTCAG | Design primers |
| 1370488 | AA-AA-AA-AT-GA-AA-AA-AT-GT-GA-AA-AA-AG-AT-AA | Design primers |
| 1416895 | AAAATGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT | Design primers |
| 1574531 | GGATTGGGCTTGGGATTAGTATTG | Design primers |
| 1596832 | TTATCAAATTATTAAATGATCAAA | Design primers |
| 1689110 | GAAAAGAAAAAAGAAAAAGAAAAAGAAAAAGAAAAA | Design primers |
| 1693319 | CACAACCACAAGGACAACCACAAGGACAACCACAGC | Design primers |
| 1776056 | TAGCCTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA-GACTGTA | Design primers |
| 1803307 | AAAGAG-AAAGAG-AAAGCG-AAAGAG-AAAAAG | Design primers |
| 1803433 | CTCAAACTCAATCCCAAACTAAAA | Design primers |
| 1806379 | AAATGAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC-AGCCTAC | Design primers |
| 1850847 | AATTTTACCGAATTTCACAGAAATTTATCG | Design primers |
| 1914846 | TTGT-CTGT-CTGT-CTGT-CTGT-CTGT | Design primers |
| 1919129 | ATGC-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT | Design primers |
| 1926098 | AAAATAGGACAAAACGACTTCTAAATAGGACAAAATAACCTCTAAATAGGACAAAATAACCTC | Design primers |
| 1930104 | TTTATTTTAAATTTAAGTTAAATTTAACTTAAA | Design primers |
| 2037951 | TATGAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC | Design primers |
| 2046875 | AAATGAGC-CTACAAGC-CTACAAGC-CTACAAGC-CTACAAGC-CTACAAGC-CTACAAGC-CTACAAGC-CTACAAGC-CTACAAGC-CTACAAGC-CTACAAGC-CTACAAGC-CTACAAGC-CTACAAGC | Design primers |
| 2124847 | AAGAATGGTTAAAAATGGTAAATAATGGGT | Design primers |
|
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