This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
| Position | Sequence | |
| 89143 | ACTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC | Design primers |
| 131937 | TGATGGCGG-TGATGGCGG-TGATGGCGG | Design primers |
| 261585 | TTTTTCTTCTCTTTTTTCTTCTTCTCTTTTTTCTTCTTCTCTTTT | Design primers |
| 263168 | ACAAAATAGGAAAAAATAGGAAAAAATAGG | Design primers |
| 320143 | TGAAAACTGC-AAAAAACTGC-AAAAAACTGC-AAAAAACTGC-AAAAAACTGC-AAAAAACTGC-AAAAAACTGC-AAAAAACTGC-AAAAAACTGC-AAAAAACTGC | Design primers |
| 368828 | TAGGCTG-TAGGCTG-TAGGCTG-TAGGCTG-TAGGCTG | Design primers |
| 383106 | CTAGGCT-GTAGGCT-GTAGGCT-GTAGGCT-GTAGGCT-GTAGGCT | Design primers |
| 432688 | CCTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC | Design primers |
| 450252 | TGACAGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT | Design primers |
| 509932 | TT-TT-AT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT | Design primers |
| 619617 | TTAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA | Design primers |
| 694784 | TTGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT-GCGTT | Design primers |
| 703278 | TTTATCC-TTTATCC-TTTATCC-TTTATCC | Design primers |
| 703581 | CGGTGCA-TGGTGCA-TGGTGCA-TGGTGCA-TGGTGCA-TGGTGCA | Design primers |
| 815703 | ACTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC | Design primers |
| 932501 | GTGGTCATGGTCATGTTTGTGGTCATGGTCATGCTTGTGTTCATGGTCATGTTT | Design primers |
| 932556 | TGGTCGTGGTCATGGTCGTGGTCGTGGTCATGGTCATGGTCGTGGTCGTGGTCATGGTCA | Design primers |
| 932617 | GGTCATGGTCGTGGTCGTGGTCGTGGTCATGGTCATGGTCATGGTCGTGGTCATGGTCGTGGTCATGGTCATGGTCATGGTCATGGTCATGGTCATGGTCATGGTCGT | Design primers |
| 969584 | TGACAGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT-CTACAGT | Design primers |
| 996911 | TTTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG-ACTG | Design primers |
| 1113492 | ATCT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT | Design primers |
| 1115163 | TT-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC | Design primers |
| 1116053 | AC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC-TC | Design primers |
| 1116884 | GCCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA-ATCA | Design primers |
| 1180817 | ACTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC-TGTAGGC | Design primers |
| 1416897 | AATGTCT-ACAGTCT-ACAGTCT-ACAGTCT-ACAGTCT-ACAGTCT-ACAGTCT-ACAGTCT-ACAGTCT | Design primers |
| 1689117 | AAAAAG-AAAAAG-AAAAAG-AAAAAG-AAAAAG | Design primers |
| 1776059 | CCTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC-TGTAGAC | Design primers |
| 1806382 | TGACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC-CTACAGC | Design primers |
| 1914847 | TGTC-TGTC-TGTC-TGTC-TGTC-TGTC | Design primers |
| 1919131 | GCTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG | Design primers |
| 2037953 | TGAGCCT-ACAGCCT-ACAGCCT-ACAGCCT-ACAGCCT-ACAGCCT-ACAGCCT-ACAGCCT-ACAGCCT-ACAGCCT-ACAGCCT-ACAGCCT | Design primers |
| 2046877 | ATGAGCCT-ACAAGCCT-ACAAGCCT-ACAAGCCT-ACAAGCCT-ACAAGCCT-ACAAGCCT-ACAAGCCT-ACAAGCCT-ACAAGCCT-ACAAGCCT-ACAAGCCT-ACAAGCCT-ACAAGCCT-ACAAGCCT | Design primers |
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