Microsatellites /Tandem Repeats database

Genome: Escherichia coli ATCC 8739

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
50072CCACTTAAAGTCATTTAAAGCCACTTAAAGDesign primers
107482TGAGGGAGAGGGTTAGGGGGAGGGDesign primers
115112GGTGTTGGTAGCAATATTTGCAGTGTTAGTTGCAATATTTCCGGTATTGGTAGCGATATTGGTDesign primers
142846TTATATATAATTTTATATATTACTATATAADesign primers
286316TAACGCGCTAACGCCCTGACGCGCDesign primers
377696TTCTGAACGTTCTGAGCGTACTGAACGDesign primers
397938TAAAAAATAAAAACAAAAAAATAAAACADesign primers
977922AACACAAC-AACACAAC-ATCACAACDesign primers
1175412CTTCTTCAA-CTTCTTCAA-CTTCTTCGADesign primers
1257713CTACAAATTCTGCAAATTCAACAAATTDesign primers
1347273GGCGTGGCGCGGTGTGGCGAGGCGGDesign primers
1823711TAAAAACCAATAAAAACAAATAAAAAATAADesign primers
1902511ACCAGCAACCAGCGACCGGCAGCCAGCADesign primers
2271307TACAGAGAATACAACAGAGATTACTACAGAGAATAADesign primers
2599991GCCACCACCGCCTCCGCCACCCGCGCCGCCGCCAGCACCACCACCDesign primers
3178094TCTGCGGCCGCTTTTGCTGCAGCGGCTTTTTCAGCTGCAGCTTTTGCCGCTGCCGCTTTTDesign primers
3184442TAATTAACTTATAATTATATTATAATTAACTCADesign primers
3835171TGAGGGAGAGGGTTAGGGTGAGGGDesign primers
3925944GTG-CTG-GCG-CTG-CTG-CTG-TTG-CTGDesign primers
3985142TTAAATAATTAAATCATTAAAAAADesign primers
4002070TGGTGATGGTGGTGGTAATGGTGGDesign primers
4023387GCCGCTTTCACCGCTTTCGCCGCTTCCDesign primers
4224408CATGCCGCCCATGCCACCCATGCCGCCCATACCGCCDesign primers
4530379TGGTGTTGATGTTGGTTTTGATGTDesign primers
4628397TTATATATTTTCATTTATTTTAATAAATTTDesign primers
4643600AACCTG-CACCTG-CACCTG-CACCTGDesign primers

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