Microsatellites /Tandem Repeats database

Genome: Acinetobacter baumannii SDF

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
20863TATTTCTTT-GGATTCTTT-GGATTCTTT-GGATTCTTT-GGATTCTTT-GGATTCTTT-GGATTCTTT-GGATTCTTT-GGATTCTTT-GGATTCTTT-GGATTCTTT-GGATTCTTTDesign primers
142621AAAAGATATATTAAGATATATTAAGATATADesign primers
148119CAAGGT-CAAGGT-CAAAGT-CAATGTDesign primers
157552GCTGCTGCGGCTGCTGATCCTGCTDesign primers
186961AT-AT-TT-TT-AT-AT-CT-TT-TT-AT-TT-TTDesign primers
251670ATCATGGTCATGATCATAGTCATGDesign primers
372683TTTTTTATTTTTTAGTTTTTATTTTTTADesign primers
605181AACCTG-ATCCTA-AACCTA-AACCTA-AACCTA-AACCTA-AACCTA-AGCCTADesign primers
726036CTGACTCTGACAGTGACTCAGACTDesign primers
726108GTGACTCAGACTCAGACAGTGATTCGGATTCTGACTCAGACAGTGATTCGGATTCTGACTCAGACAGTGATTDesign primers
726181GGATTCTGACTCAGACAGCGATTC-GGATTCTGACTCAGACAGCGATTC-GGATTCTGACTCAGACAGCGATTCDesign primers
726264GTGACTCAGACTCTGACAGCGATTCGGATTCAGACTCTGACAGCGATTCGGATTCAGACTCTGACAGCGACTDesign primers
726360CTGACTCTGACAGTGACTCAGACTDesign primers
726504CTGACTCTGACAGTGACTCAGACTDesign primers
726612GTGACTCAGACTCAGACAGTGATT-CGGATTCTGACTCAGACAGTGATT-CGGATTCTGACTCAGACAGTGATT-CGGATTCTGACTCAGACAGTGATT-CGGATTCTGACTCAGACAGTGATTDesign primers
726768GTGACTCAGACTCTGACAGCGATTCGGATTCAGACTCTGACAGTGATTCGGATTCAGACTCTGACAGCGACTDesign primers
726864CTGACTCTGACAGTGACTCAGACTDesign primers
726913CGACAGCGATTCTGACTCAGACAGCGATTCGGATTCCGACAGTGACTCAGACTCDesign primers
726968GACAGTGATTCGGATTCTGACTCA-GACAGTGATTCGGATTCTGACTCA-GACAGTGATTCGGATTCTGACTCA-GACAGTGATTCGGATTCTGACTCA-GACAGTGATTCGGATTCTGACTCA-GACAGTGATTCGGATTCTGATAGCDesign primers
727205TCAGACTCAGACAGTGATTCGGATTCCGACTCTGACAGTGACTCAGATTCTGACTCAGACAGTGATTCGGATTCTGACTCAGACAGTGATTCGGATDesign primers
727374GCGATT-CTGACT-CAGACA-GTGATT-CGGATT-CAGACT-CTGACA-GTGATT-CGGATT-CTGACT-CTGACA-GTGACTDesign primers
727477AGACAGCGATTCGGATTCCGACAGTGATTCGGATTCTGACAGCGATTCGGATTCDesign primers
727628GACTCAGACTCTGACAGTGATTCG-GATTCCGACTCTGACAGTGACTCA-GATTCTGACTCAGACAGCGATTCG-GATTCTGACTCTGACAGTGATTCG-GATTCAGACTCTGACAGCGATTCG-GATTCTGACGCAGACAGTGATTCG-GATTCTGACGCAGACAGTGATTCG-GATTCTGACTCAGACAGCGATTCG-GATTCAGACTCTGACAGCGATTCGDesign primers
727853AGTGACTCTGACAGTGATTCGGATTCTGACTCAGACAGTGATTCGGATTCTGACTCAGACAGCGATTCGGATDesign primers
728017CGATTCTGACTCAGACAGTGATTC-GGATTCTGACTCAGACAGTGATTC-GGATTCAGACTCTGACAGCGATTCDesign primers
728159AGCGATTCTGACTCAGACAGTGAT-TCGGATTCTGACTCAGACAGTGAT-TCGGATTCTGACTCAGACAGCGATDesign primers
728330GACTCAGACTCTGACAGCGATTCGGATTCTGACAGCGACTCAGATTCTGATAGCDesign primers
728385ATTCTGACTCAGACAGTGATTCGGATTCAGACTCTGACAGTGATTCGGATTCCGACTCTGACAGTGACTCAGATTCTGACTCAGACAGCGATTCTGDesign primers
728556GCGATT-CTGACT-CAGACA-GTGATT-CGGATT-CAGACT-CTGACA-GTGATT-CGGATT-CTGACT-CTGACA-GCGATT-CGGATT-CCGACT-CTGACA-GTGATT-CGGATT-CTGACT-CTGACA-GTGACTDesign primers
728695CGATTCTGACTCAGACAGTGATTCGGATTCTGACTCTGACAGCGATTCGGATTCCGACTCTGACAGTGACTCDesign primers
728840GACAGTGACTCAGACTCAGACAGTGATTCGGATTCAGACAGTGACTCAGATTCTDesign primers
758956TGAAG-TTAAA-TTAAA-TTAAA-TTAAA-TTAAADesign primers
899442ATCGAAAAATATCAAAAAAGATTAAAAAATDesign primers
965508GAGATTAAAATAGATTATAAAAGATTAAAADesign primers
1044612TTT-TTT-TCT-TAT-TTT-TCT-TTT-TCT-TDesign primers
1132531CTATTATTTCTTATTTTTTCCTATTATTTCDesign primers
1234704AAACCAA-GAACCAA-GAACCAA-GAACCAA-GAACCAADesign primers
1242165AGCAATACAAAGCAATACCTAACGATACAADesign primers
1289293AT-TG-GN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NN-NNDesign primers
1532118TGGCTTCGGTGGCCAAGG-CGGCTTTGGTGGTCAAGG-TGGCTTCGGTGGTCAAGG-TGGCTTCGGTGGTCAAGG-TGGCTTCGGTGGTCAAGG-CGGCTTCGGTGGTCAAGGDesign primers
1641606TTGTAATTTGATTTTAATTTGCTTGCAATTTAADesign primers
2032287AGGCTG-AGGTTC-AGGTTC-AGGTTC-AGGTTC-AGGTTCDesign primers
2141952GTCGCTATCAGAATCTGAGTCACTGTCGCTATCAGAGTCTGAGTCTGAGTCTGAATCAGAGTCTGAGTCACTDesign primers
2142046GAGTCTGAATCACTGTCGCTATCAGAATCAGAGTCACTGTCGCTGTCAGAGTCTGAGTCACTATCGGAATCADesign primers
2142228GTCAGAGTCTGAATCAGAGTCTGADesign primers
2142360GTCAGAGTCTGAATCAGAGTCTGADesign primers
2143032GTCGCTATCAGAATCTGAGTCACTGTCGCTATCAGAGTCTGAGTCTGAGTCTGAATCAGAGTCTGAGTCACTDesign primers
2143126GAGTCTGAATCACTGTCGCTATCAGAATCAGAGTCACTGTCGCTGTCAGAGTCTGAGTCACTATCGGAATCADesign primers
2143308GTCAGAGTCTGAATCAGAGTCTGADesign primers
2143416GTCGCTATCAGAATCTGAATCGCTATCAGAGTCTGAGTCACTATCGGAATCAGAGTCGCTGTCTGAGTCTGADesign primers
2143489TCACTGTCGCTATCAGAATCAGAGTCACTGTCGCTGTCAGAGTCTGAGTCACTATCGGAATCAGAATCAGAGTCACTGTCGCTATCAGAGTCTGAADesign primers
2143588CTGTCGGAATCAGAGTCACTGTCGCTATCAGAGTCTGAGTCACTGTCGCTATCAGAGTCTGAGTCACTGTCGDesign primers
2143960GAGTCACTATCGGAATCAGAGTCGCTGTCAGAATCAGAGTCACTGTCGCTATCADesign primers
2144015AGTCTGAATCACTGTCACTATCAGAGTCTGAGTCACTGTCGCTATCAGAGTCTGAGTCACTGTCGCTATCTGDesign primers
2144159AATCGCTATCAGAGTCTGAATCACTGTCACTATCAGAGTCTGAGTCACTATCGGAATCAGAGTCGGAATCACTGTCGCTGTCAGAGTCTGAATCACTGTCGCTATCTGAGTCTGAATCACTGTCGCTATCAGAATCTGAATCGCDesign primers
2144344GAGTCTGAATCACTGTCGCTATCAGAATCAGAGTCACTGTCGCTGTCAGAGTCTGAGTCACTATCGGAATCAGAATCAGAGTCACTGTCGCTATCAGAGTCTGAGTCACTATCGGAATCADesign primers
2144476GAGTCTGAATCACTGTCGCTATCAGAATCAGAGTCACTGTCGCTATCAGAGTCTGAGTCACTATCGGAATCAGAATCAGAGTCACTGTCGCTATCADesign primers
2144590GAGTCACTATCGGAATCAGAGTCGCTGTCAGAATCAGAGTCACTGTCGCTATCADesign primers
2144686GAGTCACTATCGGAATCACTGTCGGAATCACTGTCGDesign primers
2144723TGTCAGAGTCTGAATCACTGTCGCTATCTGAGTCTGAATCACTGTCGCTATCTGAGTCTGAATCACTGTCGCDesign primers
2144821TCAGAGTCACTGTCGCTATCAGAGTCTGAATCACTGTCACTATCAGAGTCTGAGTCACTATCGGAATCAGAGDesign primers
2145034GAGTCTGAATCACTGTCGCTATCAGAATCAGAGTCACTGTCGCTGTCAGAGTCTGAGTCACTATCGGAATCAGAATCAGAGTCACTGTCGCTATCAGAGTCTGAATCACTGTCGGAATCADesign primers
2145198GTCGCTGTCTGAGTCTGAATCACTGTCGCTATCAGAATCTGAGTCACTGTCGCTATCAGAGTCTGAGTCACTDesign primers
2168980CTGC-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACA-TACADesign primers
2216688TTCATATTGATATTCAAATTCATCDesign primers
2248387TCATGATTATTTGATGAATATTTCATGAAAATTDesign primers
2290346CAT-CTT-CTT-CTT-CAT-CAT-CAT-CTTDesign primers
2338801AAAATC-AACATC-AACATC-TAAATCDesign primers
2473761TGAAATAGAAATAGAAATTGAGATTGATATDesign primers
2473851ACGCCT-GCACCT-GCACCT-GCACCT-GCACCT-GCACCTDesign primers
2530828ATCAATA-ACAGAGA-ACAGAGA-ACAGAGA-ACAGAGA-ACAGAGA-ACAGAGA-ACAGAGA-ACAGAGA-ACAGAGA-ACAGAGA-ACAGAGA-ACAGAGA-ACAGAGA-ACAGAGADesign primers
2581609GT-TA-TC-AA-CA-CA-GT-TA-TC-CA-TA-CA-GT-TA-TA-AA-CA-AADesign primers
2593562TTGCGGTAC-AGTCGGTAC-AGTCGGTAC-AGTCGGTAC-AGTCGGTAC-AGTCGGTAC-AGTCGGTAC-AGTCGGTAC-AGTCGGTAC-AGTCGGTAC-AGTCGGTAC-AGTCGGTAC-AGTCGGTAC-AGTCGGTACDesign primers
2598718AGTACCTGTAGCACCTGTAATACCTGTDesign primers
2671833GCT-GTT-GCT-GCT-GCT-GTT-GCT-GCTDesign primers
2671890GAA-GCT-CCT-GCT-GCT-GCA-TCT-GAA-GCT-GTA-GCT-GCT-GCT-TCT-GAA-GCT-ACT-GCT-GCT-GCT-GCTDesign primers
3201335GACCGAG-CAGCGAG-CAGCGAG-CAGCGAG-CAGCGAG-CAGCGAG-CAGCGAG-CAGCGAGDesign primers

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