Microsatellites /Tandem Repeats database

Genome: Pseudomonas putida GB-1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
17351TGATCCATTCCTTCCATGGAACCATGATCCATGCCCTCCATAGAGCCATGATCCATGCCTTTCATGGAGCCGDesign primers
254937CTGCCGCCAAACCTGCAGCCAAGCCAGCCGCCAAAGDesign primers
254979CTGCCGCCAAACCTGCAGCCAAGCCCGCCGCCAAAGDesign primers
255105CTGCCGCCAAACCTGCAGCCAAGCCCGCCGCCAAAGDesign primers
358753CGCTGGCGCTGTCGCCGGCACTGGDesign primers
442317CGGCCACGGCGATGGCCAGGGCCADesign primers
500056ACC-GCC-GCC-GCC-ACC-TCC-ACC-GCCDesign primers
500463GCAGCTTGAAGCTTGCGGCTTGTAGCTTGCCGCTTDesign primers
856509GCT-GGT-GGT-GCT-GCT-GGT-ACT-GGT-GGT-GCT-GTT-GGTDesign primers
876648GCTGCCGCCGCCGATGCCGCCGCCDesign primers
1045237ACAACGGCAACGACATCGACGACGDesign primers
1055709CAGGTCCAGCTCCGGGTCCAGGTADesign primers
1188073CGGTTCGGTGACTGGCGGCTCGGTCACCGGTGGCTCGGTGACGGGDesign primers
1351927GCGCACGCGCGCGCGCAGGCGCGCDesign primers
1352003AAACCCAACACACCCAACACACCCAACDesign primers
1352643ACTATGCGCCGAGTGTGCGCCGAAGATGCGCCGDesign primers
1571234TAGGTGC-CAGGTGC-CAGGTGC-CAGGTGC-CAGGTGCDesign primers
1664654GCGCGGGGCACGTTCTTCACGTGGAGCACGTTCTTCGCGAGGGGCGCGCTCTTCGCGTGGAGCACGTTCTTCACGAGGGGCACGCTCTTCDesign primers
1664745CGAGGTGCGCGCTCTTCACGTGGAGCACGCTCTTCACGCGGTGCACGCTCTTCGDesign primers
1664943CGTGGTGCACGCTCTTCGCGCGGCGCACGTTCTTCGCGTGGGGCGCGCTCTTCACGTGGTGCACGCTCTTCGDesign primers
1680990GATTGC-TCTTGC-TCTTGC-TCTTGC-TCTTGC-TCTTGC-TCTTGC-TCTTGCDesign primers
1681360CCAAAAA-GCAAAAA-GCAAAAA-GCAAAAA-GCAAAAADesign primers
1681679CGCGAA-GATCAA-GATCAA-GATCAA-GATCAA-GATCAA-GATCAA-GATCAA-GATCAA-GATCAA-GATCAA-GATCAADesign primers
1737928GATCGAGTTCGAGATCTACATCGADesign primers
1750288GCCAGGCCCAGGGCCAGGGCCAGCDesign primers
1827178AATAGCTTAGATAGCTTAGATGGCTTAGATGGCTTAGATGGCTTAGATGGCTTADesign primers
1874536TAGCTCT-TTGCTCT-TTGCTCT-TTGCTCT-TTGCTCTDesign primers
1875196CGAAGA-TCAAGA-TCAAGA-TCAAGA-TCAAGA-TCAAGA-TCAAGA-TCAAGADesign primers
1877441TCCTGG-TGCTGG-TGCTGG-CCCTGGDesign primers
2007427AAGCGC-AGTCGC-AGTCGC-AGTCGC-AGTCGC-AGTCGCDesign primers
2254360CCAAGCCGGCCAAGCCAGCCAAACCGGDesign primers
2365047GGCCAGGGCGAGTGCCAGGGTCAGDesign primers
2499800TGTTTT-TTGCTT-TTGCTT-TTGCTT-TTGCTT-TTGCTT-TTGCTT-TTGCTT-TTGCTTDesign primers
2500172ATCCAAG-AAGCAAG-AAGCAAG-AAGCAAG-AAGCAAG-AAGCAAGDesign primers
2500501GCGAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAGDesign primers
2514013GCACCA-GCACCA-CCAGCA-GCACCA-GCADesign primers
2522982CCCTTGGCCTTGTCCTTGCCCTTGDesign primers
2555808GGCCTG-CGCCTG-CGCCTG-GGCCTGDesign primers
2649630GCCGGTTTTTCGTCGGTTTTGCAACGGTTTTTCDesign primers
2658908ACGCTC-TTGCTC-TTGCTC-TTGCTC-TTGCTC-TTGCTCDesign primers
2659354CAAGAGCAAGAGCAAGAGCAAGAGCAAGATCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGATCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGATCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGATCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGATCAAGAGCCGGAGDesign primers
2737900ATGACGATGATGACGACGATGAGGDesign primers
2958274CCTGGCCCTTGCCATGGCGCTGGCDesign primers
3044731CAGCACCAACACCGGCACCAGGACDesign primers
3296470GGCAAAGGCATAGGCAATGGAAAADesign primers
3533950TGCTGCTGCTGATCCTGCTGGTGCAGCTGCDesign primers
3559736CCTGCTCCAGCTCCTGCCCCTGCTDesign primers
3617436GCAGCCGCACCCGCACCCGCAGCADesign primers
3736449CCGCGCCAGCAGCGCCAGCAGCGCCAGDesign primers
4372287CTCAGGCTCCGGCTCAGGCTCGGGDesign primers
4378340ACTGGGGCATGACTCGGCCATGACTGAGGGATGDesign primers
4424922GGCCAGCGCCAGGGCCTGGTCCAGDesign primers
4566901GCCAGCGCCTGCACCAGCGCCAGCDesign primers
4571853CCTATAATCGATCTATAGTCGACCTATAATTGCDesign primers
4596337CCAGCGCCAGTGCCAGAGTCAGCGDesign primers
4629642GCCGGA-GCAGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGTDesign primers
4660386CAGGTGGTGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGC-CTGGGAGAGCDesign primers
4696026CCGCCGCCTTCTTCTTGGCGTCCTCGGCTGCTTTCTTCTTGGCCTCCTCGGCTGCCTTTTTCTTGGCGTCCTDesign primers
4696207CTCGGCAGCCTTCTTCGCCTCGTCGGCCTTCTTGGCTTCGGCAGCTTTCTTGGCDesign primers
4721716ACTTTCTCAACCTTCTCAACTTTTTCADesign primers
4721745CTTTTCGAC-TTTCTCTAC-CTTTTCTAC-TTTCTCTAC-CTTCTCTAC-CTTCTCTAC-CTTCTCTAC-CTTCTCTAC-CTTCTCTAC-CTTCTCTAC-CTTCTCTAC-CTTCTCTACDesign primers
4721871CTTTTCGAC-CTTTTCGCC-CTTCTCGAC-CTTCTCGAC-CTTTTCGACDesign primers
4944748GCCTGGGCCTGCGCATGGACCTGGDesign primers
5021560CATGCCGCCCATGCCACCCATGCCGCCDesign primers
5041183GAGCGCCTGGAGCACCTGCAGCGCCTGDesign primers
5093107TGTTGATGATGATGTTGTCGTTGADesign primers
5229214CCAGTGCTGATCGGCCCCGGGGTGATCGGCGAGGTGCTGATCGGCDesign primers
5345468TTCGGCTTCTTGGGCTTCTTCGGTTTCDesign primers
5368626GCAATGGGCAGGCATGGGCAGGCATGGGCADesign primers
5382203CGGAGGCAA-TGGAGGCAA-TGGAGGCAA-TGGAGGCAADesign primers
5517793CAC-CAC-CAC-CGC-CAC-CGC-CAC-CACDesign primers
5632783ACAGGATCAGGATCAGGAACAGCADesign primers
5710921TCCTTGGCCTTGACCTTGTCCTTGDesign primers
5728000AGGTCTTCGTTGTGGTCTTCCTTGAGGTCTTCGATCDesign primers
5765030GGTGTTGCTGGTGGTGCTGGTGTTGATDesign primers
5833473GCCTCGGCCTGGGCCTGGGCTTCGDesign primers
5908024CGCGAGCGCGTGGGCGAGCGCGACDesign primers
5954400CAGCCGCAGCAGCAGCCACAGCGGDesign primers
5962682CGACGGTGACGGCGACCGCGTCGGDesign primers

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