Microsatellites /Tandem Repeats database

Genome: Pseudomonas putida GB-1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
1571235AGGTGCC-AGGTGCC-AGGTGCC-AGGTGCC-AGGTGCCDesign primers
1680992TTGCTC-TTGCTC-TTGCTC-TTGCTC-TTGCTC-TTGCTC-TTGCTCDesign primers
1681361CAAAAAG-CAAAAAG-CAAAAAG-CAAAAAG-CAAAAAGDesign primers
1681683AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATCDesign primers
1827191GCTTAGATG-GCTTAGATG-GCTTAGATG-GCTTAGATG-GCTTAGATG-GCTTAGATGDesign primers
1874538GCTCTTT-GCTCTTT-GCTCTTT-GCTCTTTDesign primers
1875198AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATCDesign primers
2007430CGCAGT-CGCAGT-CGCAGT-CGCAGT-CGCAGT-CGCAGTDesign primers
2499804TTTTGC-TTTTGC-TTTTGC-TTTTGC-TTTTGC-TTTTGC-TTTTGC-TTTTGC-TTTTGC-TTTTGCDesign primers
2500175CAAGAAG-CAAGAAG-CAAGAAG-CAAGAAG-CAAGAAG-CAAGAAGDesign primers
2500504AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATCDesign primers
2658910GCTCTT-GCTCTT-GCTCTT-GCTCTT-GCTCTT-GCTCTT-GCTCTTDesign primers
2659356AGAGCA-AGAGCA-AGAGCA-AGAGCADesign primers
2659384CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAGDesign primers
2659432CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAGDesign primers
2659498CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAGDesign primers
2659570CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAGDesign primers
3736451GCGCCAGCA-GCGCCAGCA-GCGCCAGCADesign primers
4629651GGTGCT-GGTGCT-GGTGCT-GGTGCT-GGTGCT-GGTGCT-GGTGCT-GGTGCTDesign primers
4660394GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGA-GCCTGGGAGADesign primers
4721773TTCTCTACC-TTCTCTACC-TTCTCTACC-TTCTCTACC-TTCTCTACC-TTCTCTACC-TTCTCTACC-TTCTCTACC-TTCTCTACC-TTCTCTACCDesign primers
5382204GGAGGCAAT-GGAGGCAAT-GGAGGCAAT-GGAGGCAATDesign primers

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