Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Clostridium phytofermentans ISDg

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
15315	TAAAAAATTTAAATAATTTAAAAAATA	Design primers
36843	GGTAAATTATTTTATGATAAGTCATTATATTATTTTATGATAAGTCATTATATTATTTTATGAAAAGTC	Design primers
36913	TTATATTACTTTATGAAAAGTCATTATATTACTTAATGATAAATCATTATATTACTTAATGATAAATCA	Design primers
47120	TGCAATTCTAAAGGTTATTCAATTCTAAAAGTTATTCAATTCTAAAAGATA	Design primers
65538	CTGTTACTGTAACTGTTTCTGGTA	Design primers
65900	TAAGATTAATTAAAGGTTAATTAAAGGTTAATT	Design primers
65934	AAAGGTCAATTA-AAAGGTCAATTA-AAAGGTTAATTA	Design primers
75342	GGTAAAAGCTTATTAA-GGTAAAAGCTTATTAA-GTTAAAAACTTACTAA	Design primers
112658	AATGAAAAGATTATGGA-CAAGAAAAGGTTATGGA-CAAGAAAAGGTTATGGA-CAAGAAAAGGTTATGGA	Design primers
146872	ATTAAAACCT-ATGAAAACTT-ATGAAAACTT-ATTGAAACTT	Design primers
165153	ATGTAATAGGGTTTAAATGTTTGAAATAGAGTTTAAACGTTTGTAATAGAGTTTAAATGT	Design primers
220167	CATAGCTATGA-ATTAGCTATGA-ATTAGCTATGA-ATTAGCTATGA	Design primers
268933	GTGCAGAAAAAGGAGCTCATGCAGACAGAGGAGCTCGTGAAGACAAAGGAACTCGTGCAGAAAAAGGAACTC	Design primers
276635	CCTATTCTGGAGGAAAAACCTACTTTAGAGGAAAAACCTACTTTAGAGGAAAAACCTATTTTGGAGGGAAAACCTATTTTGGAGGGAAATCCTATTTTGGAGGAAAAT	Design primers
347330	TT-GC-GA-AA-CA-GA-TA-CT-TG-CA-AA-AC-AT-TT-AC-TT-GC-AA-AA-CA-TA-TA-A	Design primers
351134	AATAATAATAATAACAATAATAAT	Design primers
382404	AATTAAATTTAAATTTAAAAATAA	Design primers
453135	TAATAGCGGCAATAATAATAGTAACAATAATAATAGTAACAATAA	Design primers
453223	AAAGGTAATAAAGACGGTAATGGTAATAAAGTAGGTAAAAATAATAAAGACAGT	Design primers
465141	TAAGAGATGA-TAAGAAATAA-TAAGAAATAA-TAAGAAATAA	Design primers
465297	AGCAGAAATGCAAACAGCAATAATGCAAACAGCAATAATACAAACAGCAATAATACAAAC	Design primers
484980	CATTAATAAAGAATCGTGACAGGAATAAAGAATCGTAACAGGAATAAAGAATCGTGA	Design primers
494426	TTTTTAGTGATTTTAAGTATACCTTTTATTGATTTTAAGAATACCTTTTATTGATTTTAAGAGTAC	Design primers
511778	AAAAAAATTCAGATCATAAAAGAATTCAGATCATAAAAAATTTTAGATTATAAAAGAATTCAGATCAT	Design primers
513482	ATCACGTAAAAC-CTTAAGTAAAAC-CTTAAGTAAAAC-CTCAAGTAAAAC-CTCAAGTAAAAC-CTCAAGTAAAAC	Design primers
520963	AGAAACAACGATAATAAAAATAACGATAATAGAAATAATGAAAAT	Design primers
521038	AGTAGAAATTATGAA-AATAGAAGTAATGAA-AATAGAAACAATGAA-AATAGAAACAATGAA-AATAGAAACAATGAA	Design primers
523969	TGAGGAAATCGAGGAAATTGAGGATAT	Design primers
524277	GTGGCAAGAATACTCAAAGCGGCGAAAATACTCAAAGCGGCAAGAATACTCAAG	Design primers
525697	CATAAGGTTTTGTAAGACATAAGGTTTTATAAGACATAAAGTTATGCAAGA	Design primers
546464	GAACATATAGAGCGGGAACGTATATAGCTGGAACATATAAAGCTAGAAAATATAGAGCTGGAACAAATAAAGCGGGAACATATAAAGCGGGAACATATAAAGCGG	Design primers
546579	AGCTGGAATAAATAAAACTGGAACAAATAAAACAGGAATATATAA	Design primers
546716	AGAAGAAAAAATAGAACAAGAAAAAATAGAACAAGAAGATATAGAACAAGAAGATATAGAACAAGAAGATATAGA	Design primers
576249	CTGCGCCTACTAATGAAGTTGCACCTACTGATGAAG-CTACTCCTACAAATGAAGTTGCACCTACTGATGAAG-CTACTCCTACAAATGAAGTTGCACCTACTGATGAAG-CTACTCCTACAAATGAAGTTGCACCTACTGATGAAG-CTACTCCTACAAATGAAG	Design primers
595847	AAAGTAAAGTATCAA-AAAGCAAGATATCAA-AAAGCAAGATATCAA-AAAGCAAGATATCAA-AAAGCAAGATATCAA-AAAGCAAGATATCAA-AAAGCAAGATATCAA	Design primers
628031	AGAAAAGAAAATACTAAAGTAGAAAATACTAAAAAAGAAAGAACTAAAAAAGAAAAAACT	Design primers
653904	AAGAGTGAAAGATCAATCTATCATAGAGTGAAAGATAAAACTATCATATAGTGAAAGATAAAACTATCACAGAGTGAAGGATCAATCTTTCA	Design primers
699434	TTATAATTATAGCCAGGCATTCA-ATCTTATTATAGCCAAGCATTCA-ATCTTATTATAGCCAAGCATTCA-ATCTTATTATAGCCAAGCATTCA	Design primers
707985	ATGCATAAATGTTATGCATAAATACTAAGCATTAATGTT	Design primers
726008	ATTATAAAGTGAATATAAAGTGTGTATAAAGTG	Design primers
801038	AA-AA-AA-TA-AA-AT-AA-AA-AA-TA-CA-AA-A	Design primers
824864	AAATACCAAAAAAGATAACAAAAAAGATACCAATAAAGATACCAATAAAGATACCAATAAAAATACCAATTA	Design primers
825438	AAAAATAAAATATCAATAAATAAGAGATCAGTAAATAAAATATCA	Design primers
883941	ATTTCTTAATACAACTTTTTTAATACAATTTTCTTAGTACAA	Design primers
893354	AAAGAGTGAAGGATAATATGAGTAAAGGATAATATGAGTAAAGGATAA	Design primers
893403	ATGAGTAAAGGATAGTAAGAGTAAAGGATAATAAGAGTAAAGGATAAT	Design primers
921912	ATAAAAGAGATACAAGAAAGAGATACAAGAAAGAGATAC	Design primers
923218	TAAAAATTCTTGATCTAAAAACTCTTGAACTAAAAACTCTTCTTC	Design primers
930915	AGCGTTTTCTGTCTTTACGGCAGCAGTTTCTATCGTTACGGCAGCAGTCTCTGTCTTTACGGC	Design primers
930979	GCAGTCTCTATCGTTACGGCAGCAGTCTCTGTCTTTACGGCAGCAGTCTCTATCGTTACGGCA-GCAGTCTCTATCGTTACGGCAGCAGTCTCTGTCTTTACGGCAGCAGTCTCTATCGTTACGGCA-GCGGTCTCTGTCTTTACGGCAACAGTCTCTATCGTTACGGCAGCAGTCTCTATCGTTACGGCA-GCAGTCTCTGTCGTTACGGCAGCAGTCTCTGTCGTTGTCGCAGCAGTCTCTGTCGTTACCGCA	Design primers
931333	TTCACATTTACAGCCGCGATCACATTCACAGTCGCGATCACATTCACAGCCACG	Design primers
931440	CACAAT-CACATT-CACGAT-CACAAT-CACAAC-CACCAT	Design primers
932010	AAAGGCATTTCTTCCAAAGTTATTTCTGCCGAAGTCATTTCTACCAAAGGCATTTCTTCCAAAGTCATTTCTGCC	Design primers
932086	AAGTCATCTCTCCCGAAGTCATTTCTGCCAAAGTCATTTCTGCCGAAGTCATTTCTGCCAAAGTCATTTCTGCCA	Design primers
932166	ATTTCTACCAAAGTCATCTCTCCCGAAGTCATCTCTGCCGAAGTCATCTCTCCCGAAGTCATCTCTCCCGAAGTCATCTCTACCGAAGTCATCTCTCCCGAAGTCATTTCTGCCAAAGTC	Design primers
932297	AGTCGTTTCTTCCAAAGTCGTTTCTGCCATAGTCATCTCTGCCAA	Design primers
932495	CACGTTCACGATCACAACCACGTTCACGATTACACTCACAACCACGTTCACGATTACACTCACAACCACGTT	Design primers
935163	ATGAAAGAAATGGACCATGGCTGTATGAAAGAAATGGACCGTGATTGCAGAAGAGAAATGGAACATGGCTGTATGAAAGAAATGGACCATGGCTGTATGAAAGAAATGGACCGTGATTGCAGAAGAGAAATGGACCGTGGCTGTATGAAAGAAATGGACCGTGGCTGTATGAAAGAAATGGACCGTGATTGC	Design primers
935357	AAGAGAAATGGAATGTGGCTGCATGAGAGAAATGGATCATGGCTGCATGAAAGAAATGGACCGTGGCTGCATGAAAGAAATGGACCGTGGCTGCAT	Design primers
935454	AAAGAAATGGATCATGGCTGCATG-AAAGAAATGGATCATGGCTGCATG-AAAGAAATGGACCATGGCTGCAGA	Design primers
941489	ATAAAGGAATCAAGGAATAATGGA	Design primers
969611	GAACAAATAACCATTGAGGAATAAACAATCATTGAGGAACAAACAACCATTGAA	Design primers
978033	GAAAAAGTTGCTTTAAAAGAAGGTGCTTTAAAAGAAGGTGCTTTA	Design primers
988322	AAATTGATCAAGT-AAAGTGATTAAGT-AAAGTGATTAAGT-AAAGTGATTAAGT-AAAGTGATTAAGT-AAAGTGATTAAGT-AAAGTGATTAAGT	Design primers
1027553	ATTTTAAATTCATAAAAATAAGACCAAATAAAATTCATAAAAATTAAACCAAATTAGATTCATAAAAATAAAACC	Design primers
1027731	AAGTAAATCAAAAGAGAATCAAAGTTAAATCAA	Design primers
1050840	CCAACAACTATGCCAACTACAATGCCAACAACTGTA	Design primers
1052246	GATATTGAGTAAAAATACTATGGAGTAAAAATACTATGGAGTAAAAAT	Design primers
1053187	TGGCAATAGAAAGTAA-TAGTAAAAGAAAGTAA-TAGTAAAAGAAAGTAA-TTGTAAAAGAAAGTAA	Design primers
1060593	TTCGTTGGAACAGGAGTA-CTAGTTGGAACAGGAGTA-CTAGTTGGAAAAGGAGTA-CTTGTTGGAACAGGAGTA	Design primers
1063323	ACGCCAAGGACCACGACCAGGACCACGCCAAGGATCACGCCAAGGACC	Design primers
1063373	TCCAAGGGCCAGGGCCAAACCAAGGACCAGGGCCGAACCAAGGACCAGGACCAA	Design primers
1080272	CA-CA-GT-CT-CT-AT-CT-CT-GT-CT-CT-AT-CT-CT-GT-CT-CT-AT	Design primers
1080412	AAAACTCTATCGCGGCCAAAATCTCTATCGCGGCCAAAATCTCTATCGCAGTCA	Design primers
1080565	TCACGATCCCTATCTCTATCGCGGTCTCTATCTCTATCGCGATCTCTATCTCTG	Design primers
1080691	TCACGATCCCTATCTCTATCGCGGTCTCTATCTCTATCGCGATCTCTATCTCTGTCGCGGTCCCTATCTCTG	Design primers
1080846	ATCTCTGTCACGGTCGAAATCTCTATCGCGGTCGAAATCTCTATCCCGATCGAA	Design primers
1080958	CTATCCCTATCACGGTCCCTATCACGATCTCTATCA	Design primers
1082327	ATTGGGCATAAAAT-ATAAGGCATAAAAT-ATAAGGCATAAAAT-ATAAGGCATAAAAT-ATAAGGCATAAAAT	Design primers
1097194	ATGAAAAAGAATGCATAGTAAAAGAATGCATAGAAAAAGAATGCTATGAAAAAGAATGTATAGAAAAAGAATGCAAAGAAAAAGAATGCTATGAAAAAGAATGTCATGAAAAAGAACGCA	Design primers
1101907	AGATGGAACGAAAGAAGGAACGAAAGAAGGAACAAA	Design primers
1113443	AAAGAAAGTTCAAATAGTAAAGATGGTTCAAATAATAAAGAAAGCTCAATTAAT	Design primers
1139246	TCATCGTATTCATCATATTCATCATAT	Design primers
1139302	TCCTGCATGTTATTCATTCCTTGCATGTTATTCATTCCTTGCATATTATTCATT	Design primers
1252288	AACTCAAGAAATAGTTCAAGAAATAGCTCAAAAAAT	Design primers
1259350	TAGTGTATAAGTTTAATATATAAGTTTAATATATAAGTT	Design primers
1318787	GAAATAGTAATGTAAAGAAATAGCAAAGCAAAGAAATAGTAATGCAATGAAATAGTAGTGTAAA	Design primers
1356496	CCAACAGCAACACCGACAGCAACACCGACACCAACA	Design primers
1369582	AAAGACGAAGAACAAATAGAGGAAAAACAAATAGAGGAAGAACAAATAGAGGAAGAACAA	Design primers
1384088	TAATATCTTGCAATATCTTATAGTTTCTTG	Design primers
1388607	AAGAAAGGTGATTATAAGAAAAGTGATTAGAAAAAAAGTGGTTAT	Design primers
1401903	ATTTTAAAGAAAGTAATATTAAAGGAAGCAATATTGAAGGAAGTA	Design primers
1403287	AAAGAAAAGGTAAGAAAACAAAACA	Design primers
1406938	AAGTATTAAAGTATTGAAATATTA	Design primers
1429224	GGATCTAAAAATTATGGGATAGAAAAATTATGGAATAGAAAAATTATG	Design primers
1433906	ATCTAATTCCTTTAAGATAATAAATATCTAGCTACTTTAGGAAAATAAATATCTAGCTACTTTAAGATAATAAAT	Design primers
1437552	TTTTCTAGAGAGCCTTAAACTTATTTTCTAGAAAACTTTAAATTTATTTTCTAGAGAACCTTCAATTTC	Design primers
1460369	TACACCAACACCAACATCAACACCAACACCAACGCCTACGACAACACCAACGCCAACACC	Design primers
1468345	ACCAAC-ACCAAC-GCCAAC-ACCAAC-GCCAAC	Design primers
1468402	AACGCC-AACAGA-AACACC-AACACC-AACAGC-AACACC-AACACC-GACAGC-AACACC	Design primers
1469116	AACACCAACAACACCTACAACGCCAAC	Design primers
1508957	AACAAGGAAATGAAAAATAAAAAGGGAAATAAAAAATAAAAAGGGAAATAAAAAATA	Design primers
1520757	TTAGAAAGACAA-ACATAAAGACAA-ACATAAAAACAA-ACATAAAGACAA-ACAGAAAGACAA-ACATAAAGACAA	Design primers
1527291	AT-TT-AT-AT-CT-AT-AT-TT-AT-AT-GT-AT	Design primers
1541971	GGAAGAAAAACAAGATAAAGAGAAACAAGAAAAAGAACAACAAGA	Design primers
1542112	AACTCTAGAAGATAA-ATCACAAGAAGATAA-ATCACAAGAAGATAA-ATCACAAGAAGATAA-ATCACAAGAAGATAA-ATCACAAGAAGATAA-ATCACAAGAAGATAA-ATCACAAGAAGATAA	Design primers
1542242	GATAAATCCGAAGAAGATAAATCCAGTGAAGATAATTCAGAAAAAGATAAATCCAATGAGGATAAATTCAAAGAAGATAGAACCAAAGAA	Design primers
1544788	CAATAAAGAGATGTAATAAAAAGATGTAATAAAAAGATG	Design primers
1583957	TTAAAAAAGATTAGT-ACAAGAAAGATTAGT-ACAAGAAAGATTAGT-ACAAGAAAGATTAGT-ACAAGAAAGATTAGT-ACAAGAAAGATTAGT	Design primers
1584048	CAAGAAGATTAGTACAAAAAAGATTAGTACAAGAAAGATTAGTAC	Design primers
1584095	GAAGATTAGTACAAGAAAGATTATTACAAGTAAAATTAATACAAG	Design primers
1617912	TTAGTTCGAAATCCTAGATATTACTTTGAAATCCTAGATATTACTATAAAATCCTAGATA	Design primers
1620726	TATTTGAAATTAATAAAGTTGAAGTTAATAAATTTGAAATTAATA	Design primers
1636360	TAATAG-AAATAG-AAATAG-AAATAG-AAATAG	Design primers
1639168	CCAACAGCAACACCAATACCAACA	Design primers
1685081	TAAAATAATGTCTGTACTGTAGTAATGTCTGTACTGTAGTAATGTCTGTAC	Design primers
1685133	GTAGTAATGTCTGTAATGTAGTAATGTCTGTAGTGTAGCAATGTCTGTAGTATAGTAATGTCTGTAATATAGTAATGTCTGTAATGTAATAATGTCTGTACTGTAGTAATGTCTGTAATGAAATAATGTCTGTCAT	Design primers
1685511	TTCAAAATCATCGTCAAATTCATCGTCAAAATCATCTTCAAAATCTTC	Design primers
1704105	GAGAGCGATTGGTAGAACGATTGGTAGAACGATTGG	Design primers
1707352	CATAGAAGTAA-TAAAGAAGTGA-AAAAGAAGTGA-AAAAGAAGTGA-AAAAGAAGTGA-AAAAGAAGTGA	Design primers
1723667	AGGAGCATAATGTATTTAGAAATATTTTAGAATAATGTATTTAGAAATATTTTAGTATAATGTATTAAGAAATATTTTAGTATAATGTATTTAGAAATAT	Design primers
1817125	AAAAAAGTAAAAAAATACACTAGAAAAAAAGTAAAATAATACATTAGAAAAAAAGTAAAATAATGCACAAAA	Design primers
1828395	GATACTAAGAAAGATATGAAGAAAGATACTAAGATGGATACAAAGACA	Design primers
1836712	AGGTAATTGCAGTAACAAAGTAATTGCAGTAACAAAGTAATTGAAGTAGCA	Design primers
1850391	TAAGAAATAAA-AGATAATTAAA-AGATAAATAAA-AGATAAATAAA-AGATAAATAAA-AGATAAATAAA-AGATAAATAAA-AGATAAATAAA	Design primers
1884772	ATAGTAGAAGAAGAG-ATAGATAAAGAAGAG-ATAGATAAAGAAGAG-ATAGATAAAGAAGAG	Design primers
1913365	GTAAAATAATTAATGCTAAAAGAAATAATGGTAAAAGGAATAATG	Design primers
1958988	GCAATAGAGGAG-TCAATAGAGGAG-TCAAAAGAGGAG	Design primers
1959032	GGAGTCAAAAGAGGAATCAAAAGTGGAATTAAAAGAGGAATCAAAAGGGGAATTAAAAGA	Design primers
1962807	GTTAGTTATGAAATAAATTATAAGATAGATGCGAAATAAATTATAAGATAGATGCGAAATAAATTATAA	Design primers
2010918	GTTGCGTTTGAGTTGCAGTTGAGTTGCATTTGG	Design primers
2027008	ATAGGATATCAATCATAATTAATCATAGGCTAACAATCGTAATTAATCATAGGCTAACAATTGTAATTAATCATAGGCTAACAATTGTAATTAATC	Design primers
2029171	CGGAAATCACAGTCTCTACGACAATCGCAGTCTCTACGACAATCGCAGTCTCTACGGCAATCACAGTCTCTACGGAAATCACAGTCTCTACGGCAATCGCAATCTCTACGGAAATCGCAGTCTCTT	Design primers
2029305	ACAGCCACCGAAGCAGCCGCCACCAAAGCAACCGCCACCGAAGCA	Design primers
2036220	AATAAGAAAAGATAGTTAGAAAAGATAGTTAGAAAAGAT	Design primers
2079041	GCACCTGTTGCACCAGTAGTACCCGTCGCACCAGTATCACCTGTTGGGCCAGTA	Design primers
2079137	GTTGCACCAGTAGCACCAGTAGCACCA	Design primers
2079206	CCCGTATCACCTGTTGGACCGGTAGCACCTGTTGGACCGGTAGCACCTGTTGCA	Design primers
2080433	GTATCACCTGTAGCACCTGTGTCACCT	Design primers
2081123	CCTGTTGGTCCTTTTGGTCCTTTTGGT	Design primers
2175363	AAATAGTGCAGATAAACA-AAATAGTGCAGATAAACA-AAGTAGTGAAGACAAACA	Design primers
2175428	ACAAACAAAGTACTGTAGACAAACAAAGTAGTGCAAATAAACAAAGTAATGCAG	Design primers
2206316	TAAAGTATAATAAAGTTAAATAAAGTGTAA	Design primers
2234608	TAATGAAATAAGAATATAACGAAATATGATTATAACGAGATAAGATTA	Design primers
2258847	ACATCAAATAGTAAGGATAAAACTGCAAATAGTAAGGATAAAACTGCAAACAGTAAAGATAAAACTGCAAACAGTAAAGATAAA	Design primers
2266091	ACAAAAGCATGTAAAAACAAAAAGCATGTAAAGACAAAAAGCATGTAAAGA	Design primers
2266149	CTATAAATACAACAGCTTGTATATACAACAGCTTGTATATACAACAGC	Design primers
2270830	TTTGTTAATATCATTGGCTTGTAGATATCATTGGTTTGTAGATATCATTGG	Design primers
2275340	CAAT-CAAT-AAAT-CAAT-AAAT-CAAT	Design primers
2285784	CCCATTCCA-CTCATTCCA-CTCATTCCA-CTCATTCCA	Design primers
2300480	ATAGAAAGGAACTGATTACATAAATAAAAGAACTAATTACATAAATAAAAGAACTGATTACAT	Design primers
2323925	TTGCATAACCAATAAGTAACATAACCAATAAGTAACATAATCAATAAG	Design primers
2329095	GGTAACTCA-AGTAACTCA-AGTAACTCA	Design primers
2333477	CAACACCTACACCAACTCCAACAG	Design primers
2336435	ATAGAAGTTGGTAGTAAAAAAGTTGGTAGTAAAAAAGATGGTAGT	Design primers
2336481	AAAAGAAGATAGTAAAAAGAAGGTAGTAAAAAGAAGGTAGTA	Design primers
2336550	AAAAAGAAGATAGTAAAAGTAGATAGAAAAAGAAGGTAG	Design primers
2337296	TAAATGGGAAGATCAGATAAGGAAAAGAGAAGATCAGATAGGTAATAGAGAAGATCAGATAAGTAAATGGGATGATCATATAAATAAAAGGGATGATCAGATAAGTAAAAGGGATGATCATATAAA	Design primers
2337477	CATATAAATAAAAGGGAAGATCATACAGATAAAAGGGAACATCAGATAAGCAAAAGTGAAGATCATTTAAATAAATGGGAAGAT	Design primers
2337666	AATGAACCAGTA-AATCAACCAATA-AATCAACCAAAA-AAGCAACCAATA-AATCAACCAATG-AATCAGCCAATA-AATCAACCAATG-AACCAACCAATA	Design primers
2344933	AGAAAATATTGCTATC-TAGAAATATTGCTATC-TAGAAATATTGCTATC	Design primers
2344982	AGAAATATTACAATCTAGAAATATTGTTATCTAGAAATATTGTTATCT	Design primers
2345031	GGCATATTGTTATCTAGGAATATTGTTATCTAGGAATATTGTTATCTAGAAATATTGTTATCTAGATATATTGTTATCTAGGAATATCTTTATCTA	Design primers
2348761	TAAAAATTTTCTATACTTTAAAAATTCCTATACTTTAAAATTTTCAATACT	Design primers
2354346	ATTTGATTAATTTGATCAATTTGGTTA	Design primers
2374948	ATGATATAGGAAATTCCTA-TAAATATAGGAAATTCCTA-TAAATATAGGAAATTCCTA	Design primers
2385517	TAGGGGAGAGTAAAGAAGATAGATTAGAAGAGAGTAAAGAAGATAAATTAGAGGAGGATAAAGAAGATAAATTAGACGAGAGTAAAGACGATAAAT	Design primers
2397641	TACATGTAACATATTTGTAACATATTTGTAACA	Design primers
2398440	TTAAGATAAAATATAAAATAAAATATAATATAAAAT	Design primers
2401716	AATAAATATGAAAAAATATGAATACAAATG	Design primers
2414300	AAAAAATAATGAGCCATAAAAAATAATGAGTCCTAAAAAATAATGATTCCT	Design primers
2471050	AAGAAAAAAACTGTTATCGATAAAAAGAAAACTGTTATTGATAAAAAGAAAACTGTCATTGATAAAAGGAAAACTGTTATTGAT	Design primers
2474539	ATTCCTTATGGTAGCATTCCTTATAGTAGCATTCCTCATAATAGC	Design primers
2474753	TTCAGAAGTACTATTTTATTTCGTAATTACTATTTTATTTCGTAAGTACTATTTTAT	Design primers
2490745	TAGTATTATTATTAGTAACAGTAT	Design primers
2499467	TGAAAGAATTATATTATTTAAAGATCTATATTATTGATAGAACTGTATTAT	Design primers
2530994	AAAGAAGCAGTATAGTAAAGAAGCTTTATAATAAAGATGCTGTATAAT	Design primers
2540811	ATTTTACTTTTACTTGTAATTTAACTTTAACTTGTAATTTTTCTTTCACATGTA	Design primers
2554988	ATTAGTTGAGAGTGTATTAGAGGGGAGTGTATTAGAGGGGAGTGT	Design primers
2582769	AATATCCGAATAATATATATCCTAATTATATATATCCGAATTATA	Design primers
2593131	ACATATTTATTTTGTTTCTATTAATCTTTTATTTTGTTTCTATTAATCATTTATTCTGTTTCTATT	Design primers
2608115	TCTTTTTATAATCCTTTTGATAATCCTTTTGATAAT	Design primers
2608152	TTTTTATAATCCTTTTGATAATCCTTTTGATAATCCTTTTGATGATCC	Design primers
2618785	ATCATTGTCTTTTTATTATTGCCTTTTTATTATTGTCTTTTC	Design primers
2619146	AATGAAAACAAAGATGAATAAAGA-AATTAAAACTAAGATGAGTAAAAA-AACTAAAACAATGATGAGTAAAGA-AACTAAAACAAAGGTGAGTAAAGA-AATTAAAACAAAGGTGAGTAAAGA-AATTAAAACAAAGGTAAGTAAAGA	Design primers
2621289	ATTAATTATTTCGTATTAATTACGTCGTATTAAATATATCGT	Design primers
2703102	TAACACGTTATACCAATAAACATGTTATACCAATAAACACGTTATATTAAT	Design primers
2813962	TT-TA-TC-TT-TT-TA-TA-TT-TT-TA-TA-TT	Design primers
2813987	TATATATTTATGTTT-TATATATTTATGTTT-TATATATTTATGTTT-TATATCTTGATGTTC-TATATCTTGATGTTT	Design primers
2829706	TATCTTATATTATCGTATTTTATCG	Design primers
2855438	ACAAGGAGATACTATTCGCAT-CCTATGATATACTATTCGCAT-CCTATGATATACTATTCGCAT-CCTATGATATACTATTCGCAT	Design primers
2871763	CTCCTTTATACTTCTTTATGCTACTTTTTA	Design primers
2875676	CTCATCTCTTTTATAGTAT-CTAATCTCTTTTCTATTAT-CTCATCTCTTTTCTATTAT-CTCATCTCTTTTCTATTAT	Design primers
2880871	ATATGATTTCATTGTATTGCAAACTACCTGATTCCATTGTATAGCAAACTGCATTATTTCATCGTACTGCAAACTACATGATTTCATCGTACTGCAAACTACATGATTTCATTGTACTGTAAGCA	Design primers
2933977	CATTTCAGTGGTATTCATTTTAGCTGTATTCACTTCAGTTGTAATCACTTCAGTTGCATTCACTTTAGTGGTATACATTTTATTGGTATT	Design primers
2959123	ATTTCTCTTTTATATCTCTTTTATATCACTTTTATAACTCTTTT	Design primers
2970196	TA-AC-TC-TT-TT-TA-TT-AA-CT-CT-AT-TT-AT-TA-AC-TC-TA-TT-TG-T	Design primers
2970236	AACTCTATTTGCTAATTCTCTTTGCTAACTCTATTTTAT	Design primers
2977583	TCTTCTCCACCCTACCTCTTCTTCACTCTGCCTTTTCTTCACTCTACC	Design primers
3017388	TCTGATTTATATTATTTGATTTTTATTATTTGATTTTTATTA	Design primers
3025182	TTCAACCTTACACTCTTCCTTATGTATCAACCTTTCATTCTTCCTAATATATTAACCTTTCACACTTCCTAATGT	Design primers
3049550	TACCTATTTAACTATTATCCATTTAAATATTGCCTATTTAACTAT	Design primers
3065127	CCTCATTTCTTCG-TTTCATTTCTTCG-TTTCATTTCTTCG-TTTCATTTCTTCG	Design primers
3112745	TTTTGTATACTTTTATATTCTTCTGTATAA	Design primers
3126049	CTCTATTTCTCATCTGTTTCTCATCTGTTTCTC	Design primers
3148558	GATAATTTAGAAGATAATCTAGATGATCCTTTAGAA	Design primers
3193634	TTATTTTACCTAATATTTTTTACCTAATATTTTTTACCTAAT	Design primers
3202388	TTTTTTTGAATTTTTTGATTTTTTTTA	Design primers
3221976	GTCTATTGTCCATTGTCTATTGTCTAAT	Design primers
3229272	TCTTTTTTAGTGCCATCTTCTTTTATAATGCCATCTTCTTTTATAGTGCTACCTTCTTTTATAGTGCTATCC	Design primers
3229395	TCTTTTAAAGTACTTTCT-TCTTTTAAAGTACTTTCT-TCTTTTAACGCACTATCT	Design primers
3237321	TTTCCTTTATAG-ATTCCTTTATAG-ATTCTTTTATAG-ATTCTTTTATAG-ATTCTTTTATAG	Design primers
3245071	TTTTTGTAAAGTTTTTATAAAGTTTTAATAAAG	Design primers
3257874	CATTTCTATTAGATTAAAATTCTATTATATTAAACTTCTATTAGACTAAATATCTATTAGGTTA	Design primers
3275985	CTGCTTCTTCTTCTGCTGCTGCCT	Design primers
3297138	TGGTGAAAATGTTTTTCTTTCGGTGAAAATTATTTACTTTTAGTGAAAATGTTTTACTTT	Design primers
3370050	CCCTTAAAACCCCTAAAACTCTTAAAA	Design primers
3379100	CACGATCACGGTTACGATCACGATCACGAC	Design primers
3384204	GATAAATTCCATTAAGTTATTATAA-GATATATCCTATTTAGTTATTATAA-AATATATCCTATTTAGTTATTATAA-AATATATCCTATTTAGTTATTATAA-AATATATCCTATTTAGTTATTATAA-AATATATCCTATTTAGTTATTATAA	Design primers
3384355	ATATATCTTATTTAGTTATTATAAAATATATCCTATTTAGTTATTATAAAATATATCCTATTTAGTTATTATAAA	Design primers
3385022	CATATTTTTTACTTAGTTTTAATCGTATTTTTCACTTGGTTTTAATCGTATATTTCACTTGGTTTTAAT	Design primers
3389291	CACTTTGTACACTTTGTGAACTTTGTA	Design primers
3417827	TCGAATTCATTTCTTCTTTCATCTTCATTTCTTCTTTCAAAGCCATTTCTTCTTTCTTCTTCATTTCTTCTT	Design primers
3437103	CTA-ATA-ATA-ATA-ATA-ATA-ATA-ATA	Design primers
3455200	AAAATATTTATTCATTGGAAATACTTTTTCATTGAAAATACTTTTTCATTG	Design primers
3458028	TTTTTATTTCTTTTTGTATTTCTTCTTATATTTCTT	Design primers
3458065	TTAATATTTTCTTCTTATTATTTTCTTCCTATTATTTTCTTC	Design primers
3462654	TGGTGGTATTGGTTTTGGTAGTACAGGTTTTGGTGGTGCTGGTTTAGGTGGTACTGGCTTTGGTGGTGCTGGCTTTGGTGGTGCTGGCTTTGGTGGTGCTGGTCT	Design primers
3488515	TATTCCTATTTTTATCTACTAATCTATCCTATTTCTATCTACTAATCTATCCTATTTTTATCTACTAAT	Design primers
3500098	TTATATAT-CTATATAT-CTATATAT	Design primers
3500123	TTATATCTATATACCTACTATCTATATATCTTATATCTATATACCGACTATCTATATACCGACTATCTATATACCTTATATCTATATACCTTATATCTATATACCTTATATCTATGTAAT	Design primers
3520095	TTCTATGTCCGCTATTCCTCCTATGTCCATTATTCCTTCTATGTCCGTTATTCC	Design primers
3534460	ATGATCATGGTCGTGATCATGGTCATGATC	Design primers
3534512	TCGTGA-TCGTGA-TCATGA-TCGTGT	Design primers
3542728	ATACGCATTTTCCTTATGCGTATTACGCACTTTCTTTATGCGTATTACGCACTTTCTTTATGCATATTACGCACTTTCTTTATGCATA	Design primers
3552565	CTTTTTACTAGCCTTTTTATTAGCCTTTTTATTGGCCTTTTTATTGGC	Design primers
3552804	CATTCTCTTTATCACTTGATA-CCTTATCTTTATCCTTTGATA-CTTTATCTTTATCACTTGATA-CTTTATCTTTATCACTTGATA-CTTTATCTTTATCACTTGATA-CTTTATCTTTATCACTTGATA-CTTTATCTTTATCACTTGATA-CTTTATCTCTATCACTTGATA	Design primers
3567228	ATGATATGAAATCATACGATATGAC	Design primers
3572799	TTTGGAACACTTTCTATTATCCTTTGGCAATACTTTCTATTATCCTTTTGCAATACCATCTATTATCCT	Design primers
3575636	GTCTATTATCTCGATTCTTCTATTTTCTTGATTCTTCTATTTTCTTGATTCTTCTATTTTCTCGATTT	Design primers
3623547	GCAATGATTGCAATAATTGCAATGATT	Design primers
3669453	TT-CT-TT-TT-CT-AT-TT-CT-GT-TT-CT-AT-TT-CT-CT	Design primers
3669484	TTTCTATTCCTATTTCTATTTCTC	Design primers
3669527	CTATTT-CTGTTT-CTGTTT-CTATTT-CTATTT-CTATTT	Design primers
3680953	ATCGTACATATTCTATTGAAGCTCCTCGCACATAATCTATTGAAGCTCCTCGCACATAATCCATTGAAGCTCCTCGCACATAATCCATTGAAGCTCCTCGCACATAATCCATTGAAGCTC	Design primers
3682693	AATTCTTTGCATGTACTTGTATTTCTTTGCATGTATTTGGATTTCATTGCATTTACTTTT	Design primers
3684761	TTATGATCG-TGGTGATCG-TGATGATCG-TGATGATCG-TGGTGATCG-TGATGATCG	Design primers
3740808	TTTTTTCTTATGTATCTATATTTTCCTAAGTATCTATATTTTCCTAAGTATCTA	Design primers
3741498	AATATATTTACAATATAATTATTATATATTCAC	Design primers
3753259	GTAAACTTATTCAACAAGAAAGCATACTCATACAACAAGAAAGCAAACTCATTCAATAAGAAA	Design primers
3753323	CGGACTCATTCAATAAGAAAG-CGGACTCATTCAATAAGAAAG-CGGACTCATTCAATAAGAAAG	Design primers
3768719	TTGGATTCTTTGGATTCCTTGAATTCCTTGAATTCCTTGGATTCTTTGGATTCCTTGAATTCTTTGGATTCC	Design primers
3782386	ATGGCTGTGGCGGTGGCTGCGGCGGTGGCTTTGGCG	Design primers
3895555	TAGTTTTGATATGCT-TGATTTTGATGTGCT-TGATTTTGATACGCT-TGATTTTGATACGCT-TGATTTTGATACGCT-TGATTTTGATACGCT	Design primers
3897298	ATTATATTAATCTTTTCATATTAATCTTTTCATATTAATCTT	Design primers
3897350	TTTTTCATATTGAT-TTTTTCATATTGAT-TTTTTAAAATTGAT-TTTGTCATATTGAT-TTTTTCATATTAAT	Design primers
3898828	CGGTTGGTGTTGGCGTCGCTGTTGGTGTTGGTGTCGCCGTTGGTGTTGGTGTAG	Design primers
3901006	ATCATGTTCTCTTTCTGCAGCATGTTCTTTTACTGCATCATGTTCTTTTCCTAC	Design primers
3921760	GGTTATCTTTCTATAAGATGTTATCTCACTATAAGACGTTATCTCTCTTTAAGA	Design primers
3945652	CTCTTTATGTCTATCTCTTTAAGTATATTTCTTTATGCCTAT	Design primers
3956546	TCATCTAATTAATCTAATTAATCTAAT	Design primers
3961601	TTTATTATTTCTTACTTTATTATCTCTTAATTCTTTAGTTCTTAC	Design primers
3961647	TCATCATTTTTTGAC-TCATCATTTCTTGAC-TCATCATTTCTTGAC-TCATCTTTTCTTGAC	Design primers
3969739	AGGACCTAC-TGGACCTAC-TGGACCTAC	Design primers
3969780	CTACTGGACCTACTGGGCCTACTGGACCTACTGGGC	Design primers
3969824	GCTACTGGA-CCTACCGGA-CCTACCGGA-CCTACTGGA-CCTACCGGA-CATACCGGA	Design primers
3970016	ACTGGTGCTACTGGGCCTACCGGTCCTACTGGTCCTACTGGGCCTACTGGGCCT	Design primers
3982012	CTTTCCTTCACAAATGCTTTCCTTGTCTCACAAATGCTTTCCTTGTCTCACAAATGCTTT	Design primers
3987420	TTCCGTCTCATTTAT-TTCCGTCTCATTTAT-TTCCGTTTCTTTTGT	Design primers
3997599	TAATGTTCCTTTGATATGAAAAGC-TTAAGTTCCTCTGTTATGAAAAGC-TTAAGTTCCTCTGTTATGAAAAGC-TTAAGTTCCTCTGTTATGAAAAGC-TTAAGTTCCTCTGTTATGAAAAGC-TTAAGTTCCTCTGTTATGAAAAGC-TTAAGTTCCTCTGTTATGAAAAGC	Design primers
4007641	TTATATACTCTCGTATACTCTTGTATTCTC	Design primers
4036758	GCCTGGCTATTTTCTTCAACCATGCTATTTTCTTCAGCCTTACTAATTTCTTCAGTCAGGCTATTTTTTTCAGCCGCGCTATCTTCTTCA	Design primers
4065230	TATTTGTAACTCTAGTTGTAACCCTATTTGTAACCATATTTGTAACCA	Design primers
4079854	TTTTCTTAACTCCTTTTTCTTGACTCTTTTTTCTTAATTCTTTTTTCTTAACTTTT	Design primers
4093763	GCTTTTAATAAAATAA-GCTTTTAATAAAATAA-TCTTTTAATAAGATGA	Design primers
4097467	AATTTGCTTCTATATCAATATGTTTTTATATCAGTATGCTTTTATATC	Design primers
4123130	CCACATTTTAT-ACACATTTTAT-ACACATTTAAT	Design primers
4125883	AGTATTAGGGGATTTAGTATTATTGGCTTTAGTAGTATTGGATTT	Design primers
4160491	TTCCTTTGTGAAAGATTG-TTCCTTTGTAGAGGATTG-TTCCTTTGTGAAAGATTG-TTCCTTCGTGAAGGATTG-TTCCTTCGTGAAGGATTG-TTCCTTCGTGAAGGATTG-TTCCTTCGTAAAGGATTG	Design primers
4193105	TTTATATTTTAGCCTTTTATATCTAAACCTTTTATATCTTAACCTTTTATATTTTATCCC	Design primers
4196118	TTATTTTTTATTATTATTTTTTTATTATTATTTTTTTATTATTTCTTTATTATTAT	Design primers
4203733	GGCTGTTCTCCATCTGATTGTTCTCCATCTGATTGTTCTCCGTCT	Design primers
4227119	TACTTCCTTTATCTCTTCCTTTATCTCTTCCTTTATTTCTCCCTTTAT	Design primers
4227168	TCTTCCCTTATT-TCTTCCTTTATC-TCTTTCTTTATC-TCTTCCTTTATT-TCTCCCTTTATT-TCTCCCTTTATC-TCTTCCTTTATT-TCTTCCTTTATC-TCTTTCTTTATC-TCTTCCTTTATT	Design primers
4252640	CTTATATTTTTTAATATTTTCTTATAATTA	Design primers
4267737	GTGTTG-GAGTTG-GAGTTG-CTGTTG	Design primers
4299600	CATTGTTTTATTATT-TTTTGTTTTATTATT-TTTTGTTTTATTGTT	Design primers
4305898	CTTATAAACTAATTCCCTTGTAAATTTATTCCCTTATAAACTCATTTT	Design primers
4328252	TTCTTTCTTAATTTCTTTCTTGCTTTCTTTCTTGTT	Design primers
4374559	GAATTTTAGTAATTCAAATGATAATCAATTCAGTAATTCAAATGATAATCAACTTAGTAATTCAAATGATAA	Design primers
4374684	TTTGTAGCTCAAATGAGAATCAACTTAGTAACTCAACTGAGAATCAACTTATTAACTCAAACGAGAATCAAC	Design primers
4376181	ATACCCCAACAG-ATGCTCCAACAG-ATGCTCCAACAG-ATGCTCCAACAG	Design primers
4439943	CTTTATTTGTTTCCTTATTTGTTTCCTTAGTTGTTT	Design primers
4439980	ATTTTTCGCTTCATTTTTTGCTTCATTTTTTGCTTC	Design primers
4462078	CTCGATAAGATTCTTTATAAGATTCTTTATAAGATT	Design primers
4467368	TTATTATTCTGTTTCTTTTTATTCTGTTTCTTTTTATTTTATTTC	Design primers
4511219	TTTTTTTCTTTTTCTTTTCTTATTT	Design primers
4611801	AGAGCCTACGGAAGAACCTACTGAAGTACCTACGGA	Design primers
4611934	AGTACTCCAAAGCCAACTAGTAAGCCAAAACCAACTGCTACTCCAAAGCCAACA	Design primers
4637802	AA-AA-AA-GA-AA-GA-AA-AA-AA-CA-AA-TA-A	Design primers
4639450	AATAGCATTTAAATAGTACTTAAAAAGTATTTA	Design primers
4643881	CTTATGGCTATCATTATCTTTTGACTATCAATATCTTTTAGCTATCATTATCTTTTGACTATCAATAT	Design primers
4646615	TCATGAATGTATCATGTATGTATCACAAATGTA	Design primers
4661971	TTTTTCAATTCTTTTATAATTCTTTATCAATGC	Design primers
4664362	GGTGTACTTAATATGTATGTGTACTTGATATATATGTGTACTTGATATATATGTGTACTTGACATGTATGTGTACTTGACATGTA	Design primers
4676094	CATGTATTTCATATATTTCATGTATTT	Design primers
4680119	TTTCTTCTAATCTCTGCTTCTTTCTAACCTCTGCTTCTTTCTAATCTCTTCTTTTTTCTAATCTCTTCTTTTTTCTATTCTCTTC	Design primers
4680762	GTTATTATTTCCACTATTATTTCCGTTGTTGTTTCCATTGTTATTTCCGCTATTATTACCGTTATTGTTTCC	Design primers
4719218	AGCGATATTCTTTCTTGAA-AGTGGTTTTCTTTCTTGAA-AGTGGTTTTCTTTCTTGAA-AGTGATTTTCTTTCTTGAA	Design primers
4723576	CCATATTTCATC-TAATATTTCATC-CAATATTTCATC-CAATATTTCATC	Design primers
4746235	TTTATCTTTTATTTTTTATTTTTTATCTTTTTTCT	Design primers
4746298	TTTTATCTTTTACCTTTTGTCTTTTATT	Design primers
4750450	ATACGAAAAAATACCAATAAATACAATAAA	Design primers
4780538	GTGCTTTCGTGCTTTAGTACTTTC	Design primers
4789762	AAGAAGTTATTTGATTCTTCTAATAAGCCATTTGATTTTTCTAATAAATCATTTGATCCTTCT	Design primers
4790147	ATGGATTTCATAATACATGTGAATTTCATAATTCATGTGGATTTCATAATCCAT	Design primers
4814272	CTGCAGATAACAAACCAAATACCGCAGGGAACAAACCAAATACCGCAGGGAACAAACCGAATA	Design primers
4816835	TTTTAAGAAATTTTAAAAAATTTAAAAAAA	Design primers
4825560	TTACTTATTACTAATCACTTATTACTAA	Design primers
4825604	ACTTATC-ACTTATC-ACTCATT-ACTTATC-ACTCATT-ACTTATC	Design primers
4825647	CTCTTTG-CTTATTG-CTCTTTG-CTCCTTG-CTCTTTG-CTCTTTG-CTCTTTG-CTCTTTG-CTCTTTG-CTCTTTG	Design primers
4829349	TTATTGACCTTACTCTGCTCTTATTTGACCTTACTCTACTCTTATTTGATCTTACTCTGTTCT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

15315

TAAAAAATTTAAATAATTTAAAAAATA